RchiOBHm_Chr6g0248041
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006438
Physical Location & Seq
Forward (+)
4066639 .. 4068128
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22236

Sequence Viewer

Length: 438 bp
ATGAAAGGATTTATTGCGCCATTCCAAGGGGTCAGGTATCATGTCCATGAGTATAGAGGTGCTAATCAGTTACCTAGAAATGCAAGGGAGCTATTTAACCACAGACACTCGTCTCTTAGTAATGTCATCCAGAGGTCTTTCCATGTGTTGAAAACTAGGTTTCCTATTCTCAAACTTGCTCCTCAGTATGCTTTTCATACTCAAAGAGATATAGTTATAGCTGCTTGTGTTCTACATAATTACATCCGACGTGAGTTGAAAAATGATTGGCTGTTTTCCAGCGTGGAAGGGACAACAGTGGATGACCTACCTGACGTTGATGAACATCCTGATATTGGGTTGGTTTCTTTGGTACAAGAGCAGGTTGCGTTTTCAATGAGAGAATCAATTTCTGCAGAAATGTGGGATCACTTTATGAATGGATGGGATCAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

145

Amino Acids

17.02

Weight (kDa)

6.49

Isoelectric Point (pI)

28.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DDE_Tnp_4 PF13359 17 - 80 5.4e-08 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AclWI GGATC 2 cut(s) 414, 435
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 26, 335
AgsI TTSAA 3 cut(s) 151, 259, 375
AjiI CACGTC 1 cut(s) 251
AluBI AGCT 2 cut(s) 91, 221
AluI AGCT 2 cut(s) 91, 221
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 2 cut(s) 414, 435
ApeKI GCWGC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 2 cut(s) 75, 156
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 251
BoxI GACNNNNGTC 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 335
Bse8I GATNNNNATC 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 5 cut(s) 126, 243, 307, 325, 428
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 26, 335
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 208
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 26, 335
BsmAI GTCTC 1 cut(s) 117
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 406, 427
BspCNI CTCAG 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 2 cut(s) 414, 435
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 2 cut(s) 406, 427
BssT1I CCWWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 116, 183
BstF5I GGATG 5 cut(s) 126, 243, 307, 325, 428
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 2 cut(s) 409, 430
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 406, 427
BstPAI GACNNNNGTC 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 208
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 5 cut(s) 126, 243, 307, 325, 428
BtsIMutI CAGTG 2 cut(s) 303, 437
BveI ACCTGC 1 cut(s) 352
CfoI GCGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 353
CviAII CATG 3 cut(s) 41, 47, 143
CviJI RGCY 3 cut(s) 91, 221, 271
CviKI_1 RGCY 3 cut(s) 91, 221, 271
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 2 cut(s) 116, 183
DpnI GATC 2 cut(s) 408, 429
DpnII GATC 2 cut(s) 406, 427
Eco130I CCWWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 3 cut(s) 44, 50, 146
FaqI GGGAC 1 cut(s) 304
FatI CATG 3 cut(s) 40, 46, 142
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 4 cut(s) 113, 230, 312, 314
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 2 cut(s) 75, 156
GlaI GCGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 19
Hin1II CATG 3 cut(s) 44, 50, 146
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 1 cut(s) 383
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 2 cut(s) 130, 329
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 2 cut(s) 250, 315
HpyCH4V TGCA 2 cut(s) 83, 395
HpyF3I CTNAG 2 cut(s) 116, 183
HpySE526I ACGT 2 cut(s) 250, 315
Hsp92II CATG 3 cut(s) 44, 50, 146
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 2 cut(s) 406, 427
LmnI GCTCC 2 cut(s) 88, 184
LpnPI CCDG 6 cut(s) 19, 143, 292, 324, 342, 347
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 2 cut(s) 75, 156
MaeII ACGT 2 cut(s) 250, 315
MaeIII GTNAC 1 cut(s) 69
MalI GATC 2 cut(s) 408, 429
MboI GATC 2 cut(s) 406, 427
MluCI AATT 2 cut(s) 238, 387
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 3 cut(s) 50, 126, 192
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 45
NdeII GATC 2 cut(s) 406, 427
NlaIII CATG 3 cut(s) 44, 50, 146
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 1 cut(s) 223
PshAI GACNNNNGTC 1 cut(s) 109
PstI CTGCAG 1 cut(s) 397
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 2 cut(s) 406, 427
SfcI CTRYAG 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 238, 387
SspMI CTAG 2 cut(s) 75, 156
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 2 cut(s) 253, 318
TasI AATT 2 cut(s) 238, 387
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 303, 437
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 4 cut(s) 17, 185, 336, 431
TspRI CASTG 2 cut(s) 303, 437
XspI CTAG 2 cut(s) 75, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.