Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006438

Physical Location & Seq

Genomic Coordinates Forward (+)

35818620 .. 35822054

Gene Structure 3435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1227900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGACAAGCACGTCTTCTACAAGTTGTGTGATATTTTGCAAGGAAAAGGCCTTCTGCGTCACACAAATCGAATCAAGATTGAAGAGCAACTGGCCATGTTCTTGTTCATAATTGGTCATAATCTACGGACTCGAGCTGTTCAAGAGTTATTCCGTTATTCAGGAGAAACCATCAGTCGTCATTTCAACAATGTCTTGAACGCAGTAATGGCAATTTCGTTAGGTTTCTTTCAGCCTCCAGGATCTGATGTTCCTGCCAAAATTTCAGATGATCCTAGATTCTATCCATATTTTAAGGATTGTGTGGGAGCAGTTGATGGCATACGCCTCCCAGTGATGGTGGGTGTAGATGAGCAAGGACCTTTCCGCGACAAGAATGGCTTACTTTCACAAAATGTTCTGGCTGCTTGCTCATTTGATCTCAAGTTCCTTTATGTCTTGGCTGGTTGGGAAGGCTCTGCATCAGATTTGCAAGTTTTGAATTCTGCTCTCACGAGACGAAACAAATTGCAGATGCCAGAAGGTAAATACTACCTCGTGGATAACAAGTATGCAAACATGCCTGGCTTCATTGCTCCTTATCCTGGTTTACTTTATCACTGGACGGAGTTTCCTAGTGGTTATCACCCTCAAGATGTGAAAGAGCTATTTAATCAGCGACACTCATTGTTACGAAATGCATCTGAACGCACTTTTGGGGCTTTAAAGGAACGCTTCCCTATACTGATGTCAGCTCCTCCGTACCCATTGCAAACACAAGTCAAGTTGGTTGTGGCAGCTTGTGCCCTACACAATTTCATCCGCGAGGAGAAACCAGATGACTGGATCTTCAAAATGTACGAAAAGGACACCATACTGCAAATGGAGGAATCAGTTCCCCCATTAGCGGTGCTGGAGCCACCAATCATGCATTTTGAGGCCTCTGGTTTTGACACAGAAGAACTCGAATTCACTTCGCAGATGCGGGATTCGATTGCAAGTGAAATGTGGGATGACTATATCCATGATTTATCTCCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

341

Amino Acids

38.98

Weight (kDa)

5.61

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8040	PF26138	1 - 70	3.1e-27	Domain of unknown function (DUF8040)
DDE_Tnp_4	PF13359	122 - 265	6.6e-19	DDE superfamily endonuclease
Plant_tran	PF04827	134 - 271	9.9e-08	Plant transposon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41980
fragaria_vesca	FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911
malus_domestica	MD00G1159500.v1.1 MD06G1227900.v1.1 MD14G1237100.v1.1
prunus_persica	Prupe.5G234400_v2.0.a1 Prupe.7G000100_v2.0.a1
pyrus_communis	pycom06g20420 pycom06g20430 pycom12g00010 pycom14g19810
rosa_chinensis	RchiOBHm_Chr1g0313091 RchiOBHm_Chr6g0248041
rosa_multiflora	Rmu_sc0001606.1_g000006 Rmu_sc0030940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332540
rosa_samantha	Rh1CG001900 Rh1CG005100 Rh6BG040400
rosa_wichuraiana	Rw0G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AccII	CGCG	2 cut(s)	369, 804
AciI	CCGC	4 cut(s)	367, 802, 887, 964
AclWI	GGATC	3 cut(s)	250, 266, 833
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	3 cut(s)	261, 481, 947
AfaI	GTAC	2 cut(s)	743, 839
AfiI	CCNNNNNNNGG	3 cut(s)	337, 584, 886
AgsI	TTSAA	6 cut(s)	83, 143, 187, 199, 481, 832
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	3 cut(s)	238, 562, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	678, 710
AloI	GAACNNNNNNTCC	2 cut(s)	234, 266
AluBI	AGCT	4 cut(s)	137, 646, 734, 779
AluI	AGCT	4 cut(s)	137, 646, 734, 779
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	3 cut(s)	250, 266, 833
AlwNI	CAGNNNCTG	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	3 cut(s)	49, 93, 918
ApeKI	GCWGC	2 cut(s)	404, 776
ApoI	RAATTY	3 cut(s)	261, 481, 947
Asp700I	GAANNNNTTC	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	617
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	95
BauI	CACGAG	2 cut(s)	493, 536
BbsI	GAAGAC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	391, 788
BccI	CCATC	3 cut(s)	179, 311, 331
BciT130I	CCWGG	3 cut(s)	240, 564, 585
BcoDI	GTCTC	1 cut(s)	490
BfaI	CTAG	2 cut(s)	276, 615
BisI	GCNGC	2 cut(s)	405, 777
BlsI	GCNGC	2 cut(s)	406, 778
Bme1390I	CCNGG	3 cut(s)	240, 564, 585
Bme18I	GGWCC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	132
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	897
BmrFI	CCNGG	3 cut(s)	240, 564, 585
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	4 cut(s)	470, 504, 689, 951
BmuI	ACTGGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	7
BpmI	CTGGAG	2 cut(s)	222, 914
BpuEI	CTTGAG	2 cut(s)	407, 615
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 584, 886
Bse1I	ACTGG	4 cut(s)	96, 332, 605, 827
Bse3DI	GCAATG	2 cut(s)	570, 746
BseBI	CCWGG	3 cut(s)	240, 564, 585
BseGI	GGATG	2 cut(s)	798, 997
BseLI	CCNNNNNNNGG	3 cut(s)	337, 584, 886
BseMI	GCAATG	2 cut(s)	570, 746
BseNI	ACTGG	4 cut(s)	96, 332, 605, 827
BseRI	GAGGAG	2 cut(s)	726, 821
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	2 cut(s)	391, 788
Bsh1236I	CGCG	2 cut(s)	369, 804
BshFI	GGCC	3 cut(s)	51, 95, 920
BsiHKCI	CYCGRG	1 cut(s)	132
BslI	CCNNNNNNNGG	3 cut(s)	337, 584, 886
BsmAI	GTCTC	1 cut(s)	490
BsmBI	CGTCTC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	51, 95, 920
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp143I	GATC	4 cut(s)	242, 271, 418, 825
BspACI	CCGC	4 cut(s)	367, 802, 887, 964
BspANI	GGCC	3 cut(s)	51, 95, 920
BspFNI	CGCG	2 cut(s)	369, 804
BspLI	GGNNCC	1 cut(s)	897
BspPI	GGATC	3 cut(s)	250, 266, 833
BspQI	GCTCTTC	1 cut(s)	78
BsrDI	GCAATG	2 cut(s)	570, 746
BsrI	ACTGG	4 cut(s)	96, 332, 605, 827
BssMI	GATC	4 cut(s)	242, 271, 418, 825
BssSI	CACGAG	2 cut(s)	493, 536
Bst2BI	CACGAG	2 cut(s)	493, 536
Bst2UI	CCWGG	3 cut(s)	240, 564, 585
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	798, 997
BstFNI	CGCG	2 cut(s)	369, 804
BstKTI	GATC	4 cut(s)	245, 274, 421, 828
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	4 cut(s)	242, 271, 418, 825
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 782
BstNI	CCWGG	3 cut(s)	240, 564, 585
BstNSI	RCATGY	1 cut(s)	562
BstSCI	CCNGG	3 cut(s)	238, 562, 583
BstSLI	GKGCMC	1 cut(s)	787
BstUI	CGCG	2 cut(s)	369, 804
BstV1I	GCAGC	2 cut(s)	391, 788
BstV2I	GAAGAC	1 cut(s)	7
BstX2I	RGATCY	2 cut(s)	242, 825
BstXI	CCANNNNNNTGG	1 cut(s)	822
BstYI	RGATCY	2 cut(s)	242, 825
BsuRI	GGCC	3 cut(s)	51, 95, 920
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	798, 997
BtsIMutI	CAGTG	2 cut(s)	339, 598
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	742, 838
CviAII	CATG	5 cut(s)	97, 559, 907, 1004, 1018
CviQI	GTAC	2 cut(s)	742, 838
DpnI	GATC	4 cut(s)	244, 273, 420, 827
DpnII	GATC	4 cut(s)	242, 271, 418, 825
DraI	TTTAAA	1 cut(s)	705
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco147I	AGGCCT	2 cut(s)	51, 920
Eco47I	GGWCC	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	2 cut(s)	481, 947
EcoRII	CCWGG	3 cut(s)	238, 562, 583
EcoT22I	ATGCAT	2 cut(s)	682, 912
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	5 cut(s)	100, 562, 910, 1007, 1021
FalI	AAGNNNNNCTT	5 cut(s)	31, 365, 397, 698, 730
FatI	CATG	5 cut(s)	96, 558, 906, 1003, 1017
FauI	CCCGC	1 cut(s)	957
Fnu4HI	GCNGC	2 cut(s)	405, 777
FokI	GGATG	2 cut(s)	785, 1004
Fsp4HI	GCNGC	2 cut(s)	405, 777
FspBI	CTAG	2 cut(s)	276, 615
GluI	GCNGC	2 cut(s)	405, 777
GsuI	CTGGAG	2 cut(s)	222, 914
HaeIII	GGCC	3 cut(s)	51, 95, 920
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	5 cut(s)	100, 562, 910, 1007, 1021
HinfI	GANTC	5 cut(s)	72, 130, 279, 869, 968
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	4 cut(s)	247, 268, 466, 685
Hpy188III	TCNNGA	6 cut(s)	76, 143, 162, 196, 493, 632
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	3 cut(s)	62, 446, 515
HpyCH4IV	ACGT	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 782
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	5 cut(s)	100, 562, 910, 1007, 1021
Kzo9I	GATC	4 cut(s)	242, 271, 418, 825
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	4 cut(s)	308, 580, 739, 895
Lsp1109I	GCAGC	2 cut(s)	391, 788
LweI	GCATC	4 cut(s)	470, 504, 689, 951
MaeI	CTAG	2 cut(s)	276, 615
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	59, 669
MalI	GATC	4 cut(s)	244, 273, 420, 827
MboI	GATC	4 cut(s)	242, 271, 418, 825
MboII	GAAGA	4 cut(s)	7, 95, 820, 950
MflI	RGATCY	2 cut(s)	242, 825
MhlI	GDGCHC	1 cut(s)	787
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	7 cut(s)	111, 213, 261, 481, 506, 793, 947
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	9 cut(s)	246, 338, 545, 639, 747, 799, 859, 910, 931
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	2 cut(s)	682, 912
MroXI	GAANNNNTTC	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	3 cut(s)	294, 651, 704
Msp20I	TGGCCA	1 cut(s)	95
MspR9I	CCNGG	3 cut(s)	240, 564, 585
MvaI	CCWGG	3 cut(s)	240, 564, 585
MvnI	CGCG	2 cut(s)	369, 804
MwoI	GCNNNNNNNGC	2 cut(s)	209, 782
NdeII	GATC	4 cut(s)	242, 271, 418, 825
NlaIII	CATG	5 cut(s)	100, 562, 910, 1007, 1021
NlaIV	GGNNCC	1 cut(s)	897
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	2 cut(s)	682, 912
NspI	RCATGY	1 cut(s)	562
PaeR7I	CTCGAG	1 cut(s)	132
PceI	AGGCCT	2 cut(s)	51, 920
PciSI	GCTCTTC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	4 cut(s)	72, 279, 869, 968
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	406, 778
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	3 cut(s)	238, 562, 583
PspGI	CCWGG	3 cut(s)	238, 562, 583
PspN4I	GGNNCC	1 cut(s)	897
PspPI	GGNCC	1 cut(s)	359
PspPPI	RGGWCCY	1 cut(s)	359
PspXI	VCTCGAGB	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	242, 825
RsaI	GTAC	2 cut(s)	743, 839
RsaNI	GTAC	2 cut(s)	742, 838
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	294, 651, 704
SatI	GCNGC	2 cut(s)	405, 777
Sau3AI	GATC	4 cut(s)	242, 271, 418, 825
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	3 cut(s)	240, 564, 585
SduI	GDGCHC	1 cut(s)	787
SetI	ASST	9 cut(s)	15, 139, 226, 364, 526, 537, 648, 736, 781
SfaNI	GCATC	4 cut(s)	470, 504, 689, 951
Sfr274I	CTCGAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	3 cut(s)	132, 422, 630
SmoI	CTYRAG	3 cut(s)	132, 422, 630
Sse9I	AATT	7 cut(s)	111, 213, 261, 481, 506, 793, 947
SseBI	AGGCCT	2 cut(s)	51, 920
SsiI	CCGC	4 cut(s)	367, 802, 887, 964
SspMI	CTAG	2 cut(s)	276, 615
StuI	AGGCCT	2 cut(s)	51, 920
StyD4I	CCNGG	3 cut(s)	238, 562, 583
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	4 cut(s)	70, 133, 945, 971
TasI	AATT	7 cut(s)	111, 213, 261, 481, 506, 793, 947
TfiI	GAWTC	4 cut(s)	72, 279, 869, 968
Tru1I	TTAA	3 cut(s)	294, 651, 704
Tru9I	TTAA	3 cut(s)	294, 651, 704
TscAI	CASTG	2 cut(s)	339, 605
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	404, 776
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	97, 559, 787
TspGWI	ACGGA	4 cut(s)	142, 143, 620, 729
TspRI	CASTG	2 cut(s)	339, 605
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	3 cut(s)	261, 481, 947
XceI	RCATGY	1 cut(s)	562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XhoI	CTCGAG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	2 cut(s)	276, 615
Zsp2I	ATGCAT	2 cut(s)	682, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.