Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006438

Physical Location & Seq

Genomic Coordinates Forward (+)

66730411 .. 66733755

Gene Structure 3345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCATAAAGATACATCAGCTGAAATGGATGATTTCGACTTACAACTGGATGAGATGGAATTAACTGCAGCAGCGGCTGGGTACCATTATTATAGCAGTATTACCAAGCAGCCTTGTCATAGTTTGTCACCAAGTAAAGGATGTGGATTTATGACAGAGGTGCTAAATGGTCACGATGTTGTGTTCCAGGAAATGTTTCGGATGGATAAAAATGTATTTCACAAATTGTGTGACATTCTTCGGCAAAGAGGCATGTTGCGTGATACTGCTGGTGTTATGATAGAGGAGCAGCTTGGAATATTTTTGAATATTATTGGCCATAATGAGCGGAACAGAGTAATCCAAGAGCGGTTTCATCACTCAGGTGAAACCATCAGCCGTCATTTCAACAATGTGTTGAAGGCTGTCAAGTCGCTTTCGCGTGAATTTTTACAAACTCCAAGCCCCAGCACTCCTCCAGAAATCCTTGGAAATAGCAGATTTTATCCGTATTTCCAGGATTGTATCGGAGTCATTGGTGGAATGCACATTCCTGCCCAGGTGCCAGCCAAAGATCAATCCCGCTTTCGTAATAAGAAAGGTGTTCTTTCACAAAATGTGTTGGCAGCTTGCACGTTTGATCTTCAGTTTATATTCGTCTATCCTGGTTGGGAAGGCTCTGCTGCAGGTTCACGTGTATTGAGAGCAGTCCTTGATGATCCACATCAGAATTTCCCACATATTCCTGAAGGGAAATATTTCCTTGTTGACACTGGATATGCAAATATGAAAGGATTTATTGCGCCATTCCAAGGGGTCAGGTATCATGTCCATGAGTATAGAGGTGCAAATCAGTTACCTAGAAATGCAAGAGAGATATTTAACCACAGACACTCGTCTCTTAGTAATGTCATCCAGAGGTCTTTCCATGTGTTGAAAACTAGGTTTCCTATTCTGAAACTTGCTCCTCAGTATGCTTTTCATACTCAAAGAGATATAGTTATAGCTGCTTGTGTTCTACATAATTACATCCGACGTGAGTTGAAAAATGATTGGCTGTTTTCCAGCGTGGAAGGGACAACAATGGATGACCTACCTGATGTTGATGAACATCCTGATATTGGGTTGGTTTCTTCGGTACAAGAGCAGGTTGCGTTTTCAATGAGAGATTCAATTTCGGCAGAAATGTGGGATCACTTTATAAATAGATGGGATCAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

400

Amino Acids

45.93

Weight (kDa)

6.49

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8040	PF26138	45 - 137	1.1e-36	Domain of unknown function (DUF8040)
DDE_Tnp_4	PF13359	173 - 335	2.9e-21	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41980
fragaria_vesca	FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911
malus_domestica	MD00G1159500.v1.1 MD06G1227900.v1.1 MD14G1237100.v1.1
prunus_persica	Prupe.5G234400_v2.0.a1 Prupe.7G000100_v2.0.a1
pyrus_communis	pycom06g20420 pycom06g20430 pycom12g00010 pycom14g19810
rosa_chinensis	RchiOBHm_Chr1g0313091 RchiOBHm_Chr6g0248041
rosa_multiflora	Rmu_sc0001606.1_g000006 Rmu_sc0030940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332540
rosa_samantha	Rh1CG001900 Rh1CG005100 Rh6BG040400
rosa_wichuraiana	Rw0G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1181
Acc36I	ACCTGC	2 cut(s)	656, 1117
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	2 cut(s)	81, 541
AccBSI	CCGCTC	2 cut(s)	328, 349
AccII	CGCG	1 cut(s)	421
AciI	CCGC	4 cut(s)	74, 328, 349, 562
AclWI	GGATC	3 cut(s)	692, 1179, 1200
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	425, 709
AcuI	CTGAAG	2 cut(s)	608, 747
AcvI	CACGTG	1 cut(s)	674
AfaI	GTAC	2 cut(s)	83, 1119
AfiI	CCNNNNNNNGG	3 cut(s)	137, 791, 1100
AflIII	ACRYGT	1 cut(s)	673
AgsI	TTSAA	7 cut(s)	307, 388, 400, 916, 1024, 1140, 1152
AjiI	CACGTC	1 cut(s)	1016
AjnI	CCWGG	4 cut(s)	186, 495, 537, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AleI	CACNNNNGTG	1 cut(s)	363
AluBI	AGCT	4 cut(s)	20, 292, 608, 986
AluI	AGCT	4 cut(s)	20, 292, 608, 986
Alw26I	GTCTC	1 cut(s)	882
AlwI	GGATC	3 cut(s)	692, 1179, 1200
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	7 cut(s)	68, 71, 109, 289, 605, 662, 986
ApoI	RAATTY	2 cut(s)	425, 709
Asp700I	GAANNNNTTC	2 cut(s)	195, 737
Asp718I	GGTACC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	784
AsuHPI	GGTGA	2 cut(s)	120, 377
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	2 cut(s)	81, 541
BbrPI	CACGTG	1 cut(s)	674
BbvI	GCAGC	7 cut(s)	80, 83, 121, 301, 617, 649, 973
BccI	CCATC	4 cut(s)	49, 196, 380, 1182
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	4 cut(s)	188, 497, 539, 645
BcoDI	GTCTC	1 cut(s)	882
BfaI	CTAG	2 cut(s)	840, 921
BfmI	CTRYAG	2 cut(s)	66, 663
BfuAI	ACCTGC	2 cut(s)	656, 1117
BisI	GCNGC	8 cut(s)	69, 72, 75, 110, 290, 606, 663, 987
BlsI	GCNGC	8 cut(s)	70, 73, 76, 111, 291, 607, 664, 988
Bme1390I	CCNGG	4 cut(s)	188, 497, 539, 645
BmgBI	CACGTC	1 cut(s)	1016
BmiI	GGNNCC	2 cut(s)	83, 543
BmrFI	CCNGG	4 cut(s)	188, 497, 539, 645
BoxI	GACNNNNGTC	1 cut(s)	874
BpmI	CTGGAG	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	674
BsaBI	GATNNNNATC	2 cut(s)	702, 1089
BsaJI	CCNNGG	3 cut(s)	466, 537, 790
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 791, 1100
Bse1I	ACTGG	2 cut(s)	51, 757
Bse8I	GATNNNNATC	2 cut(s)	702, 1089
BseBI	CCWGG	4 cut(s)	188, 497, 539, 645
BseDI	CCNNGG	3 cut(s)	466, 537, 790
BseGI	GGATG	8 cut(s)	34, 55, 146, 207, 891, 1008, 1072, 1090
BseJI	GATNNNNATC	2 cut(s)	702, 1089
BseLI	CCNNNNNNNGG	3 cut(s)	137, 791, 1100
BseMII	CTCAG	2 cut(s)	375, 962
BseNI	ACTGG	2 cut(s)	51, 757
BseRI	GAGGAG	3 cut(s)	299, 444, 936
BseXI	GCAGC	7 cut(s)	80, 83, 121, 301, 617, 649, 973
BseYI	CCCAGC	2 cut(s)	77, 446
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	2 cut(s)	81, 541
BslFI	GGGAC	1 cut(s)	1069
BslI	CCNNNNNNNGG	3 cut(s)	137, 791, 1100
BsmAI	GTCTC	1 cut(s)	882
BsmBI	CGTCTC	1 cut(s)	882
BsmFI	GGGAC	1 cut(s)	1069
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	5 cut(s)	553, 619, 697, 1171, 1192
BspACI	CCGC	4 cut(s)	74, 328, 349, 562
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	374, 961
BspFNI	CGCG	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	83, 543
BspMAI	CTGCAG	2 cut(s)	70, 667
BspMI	ACCTGC	2 cut(s)	656, 1117
BspPI	GGATC	3 cut(s)	692, 1179, 1200
BspT107I	GGYRCC	2 cut(s)	81, 541
BsrBI	CCGCTC	2 cut(s)	328, 349
BsrI	ACTGG	2 cut(s)	51, 757
BssECI	CCNNGG	3 cut(s)	466, 537, 790
BssMI	GATC	5 cut(s)	553, 619, 697, 1171, 1192
BssT1I	CCWWGG	2 cut(s)	466, 790
Bst2UI	CCWGG	4 cut(s)	188, 497, 539, 645
BstBAI	YACGTR	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	546, 610
BstDEI	CTNAG	3 cut(s)	361, 881, 948
BstF5I	GGATG	8 cut(s)	34, 55, 146, 207, 891, 1008, 1072, 1090
BstFNI	CGCG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	5 cut(s)	556, 622, 700, 1174, 1195
BstMAI	GTCTC	1 cut(s)	882
BstMBI	GATC	5 cut(s)	553, 619, 697, 1171, 1192
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	4 cut(s)	188, 497, 539, 645
BstNSI	RCATGY	1 cut(s)	256
BstPAI	GACNNNNGTC	1 cut(s)	874
BstSCI	CCNGG	4 cut(s)	186, 495, 537, 643
BstSFI	CTRYAG	2 cut(s)	66, 663
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	7 cut(s)	80, 83, 121, 301, 617, 649, 973
BsuRI	GGCC	1 cut(s)	318
BtrI	CACGTC	1 cut(s)	1016
BtsCI	GGATG	8 cut(s)	34, 55, 146, 207, 891, 1008, 1072, 1090
BtsIMutI	CAGTG	2 cut(s)	750, 1202
BveI	ACCTGC	2 cut(s)	656, 1117
Cac8I	GCNNGC	2 cut(s)	546, 610
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	784
Csp6I	GTAC	2 cut(s)	82, 1118
CviAII	CATG	4 cut(s)	253, 806, 812, 908
CviQI	GTAC	2 cut(s)	82, 1118
DdeI	CTNAG	3 cut(s)	361, 881, 948
DpnI	GATC	5 cut(s)	555, 621, 699, 1173, 1194
DpnII	GATC	5 cut(s)	553, 619, 697, 1171, 1192
EaeI	YGGCCR	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	466, 790
Eco57I	CTGAAG	2 cut(s)	608, 747
Eco72I	CACGTG	1 cut(s)	674
EcoRII	CCWGG	4 cut(s)	186, 495, 537, 643
EcoT14I	CCWWGG	2 cut(s)	466, 790
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	466, 790
Esp3I	CGTCTC	1 cut(s)	882
FaeI	CATG	4 cut(s)	256, 809, 815, 911
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	1069
FatI	CATG	4 cut(s)	252, 805, 811, 907
FauI	CCCGC	1 cut(s)	569
Fnu4HI	GCNGC	8 cut(s)	69, 72, 75, 110, 290, 606, 663, 987
FokI	GGATG	8 cut(s)	41, 62, 153, 214, 878, 995, 1077, 1079
Fsp4HI	GCNGC	8 cut(s)	69, 72, 75, 110, 290, 606, 663, 987
FspBI	CTAG	2 cut(s)	840, 921
GlaI	GCGC	1 cut(s)	783
GluI	GCNGC	8 cut(s)	69, 72, 75, 110, 290, 606, 663, 987
GsaI	CCCAGC	2 cut(s)	81, 450
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	784
Hin1II	CATG	4 cut(s)	256, 809, 815, 911
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HinfI	GANTC	2 cut(s)	510, 1148
HphI	GGTGA	2 cut(s)	120, 377
Hpy166II	GTNNAC	2 cut(s)	671, 748
Hpy188I	TCNGA	5 cut(s)	201, 509, 708, 936, 1013
Hpy188III	TCNNGA	5 cut(s)	173, 458, 725, 895, 1094
Hpy8I	GTNNAC	2 cut(s)	671, 748
Hpy99I	CGWCG	1 cut(s)	1017
HpyAV	CCTTC	4 cut(s)	394, 647, 722, 1046
HpyCH4IV	ACGT	3 cut(s)	614, 673, 1015
HpyCH4V	TGCA	8 cut(s)	4, 68, 526, 612, 665, 761, 827, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	3 cut(s)	361, 881, 948
HpySE526I	ACGT	3 cut(s)	614, 673, 1015
Hsp92II	CATG	4 cut(s)	256, 809, 815, 911
HspAI	GCGC	1 cut(s)	782
KpnI	GGTACC	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	553, 619, 697, 1171, 1192
LmnI	GCTCC	2 cut(s)	286, 949
Lsp1109I	GCAGC	7 cut(s)	80, 83, 121, 301, 617, 649, 973
MaeI	CTAG	2 cut(s)	840, 921
MaeII	ACGT	3 cut(s)	614, 673, 1015
MaeIII	GTNAC	4 cut(s)	126, 170, 230, 834
MalI	GATC	5 cut(s)	555, 621, 699, 1173, 1194
MbiI	CCGCTC	2 cut(s)	328, 349
MboI	GATC	5 cut(s)	553, 619, 697, 1171, 1192
MboII	GAAGA	3 cut(s)	230, 614, 1104
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	6 cut(s)	59, 224, 425, 709, 1003, 1152
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	519
MmeI	TCCRAC	1 cut(s)	1036
MnlI	CCTC	7 cut(s)	151, 242, 277, 465, 815, 891, 957
Mox20I	TGGCCA	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	195, 737
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	2 cut(s)	62, 861
MslI	CAYNNNNRTG	2 cut(s)	363, 810
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	20, 74
MspR9I	CCNGG	4 cut(s)	188, 497, 539, 645
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	4 cut(s)	188, 497, 539, 645
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	5 cut(s)	553, 619, 697, 1171, 1192
NlaIII	CATG	4 cut(s)	256, 809, 815, 911
NlaIV	GGNNCC	2 cut(s)	83, 543
NmuCI	GTSAC	3 cut(s)	126, 170, 230
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	256
OliI	CACNNNNGTG	1 cut(s)	363
PctI	GAATGC	1 cut(s)	528
PdmI	GAANNNNTTC	2 cut(s)	195, 737
PfeI	GAWTC	1 cut(s)	1148
PfoI	TCCNGGA	2 cut(s)	186, 495
PkrI	GCNGC	8 cut(s)	70, 73, 76, 111, 291, 607, 664, 988
PleI	GAGTC	1 cut(s)	518
PmaCI	CACGTG	1 cut(s)	674
PmlI	CACGTG	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	518
Ppu21I	YACGTR	1 cut(s)	674
PshAI	GACNNNNGTC	1 cut(s)	874
PsiI	TTATAA	1 cut(s)	1181
Psp6I	CCWGG	4 cut(s)	186, 495, 537, 643
PspCI	CACGTG	1 cut(s)	674
PspFI	CCCAGC	2 cut(s)	77, 446
PspGI	CCWGG	4 cut(s)	186, 495, 537, 643
PspN4I	GGNNCC	2 cut(s)	83, 543
PstI	CTGCAG	2 cut(s)	70, 667
PstNI	CAGNNNCTG	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	2 cut(s)	83, 1119
RsaNI	GTAC	2 cut(s)	82, 1118
RseI	CAYNNNNRTG	2 cut(s)	363, 810
SaqAI	TTAA	2 cut(s)	62, 861
SatI	GCNGC	8 cut(s)	69, 72, 75, 110, 290, 606, 663, 987
Sau3AI	GATC	5 cut(s)	553, 619, 697, 1171, 1192
SchI	GAGTC	1 cut(s)	519
ScrFI	CCNGG	4 cut(s)	188, 497, 539, 645
SfcI	CTRYAG	2 cut(s)	66, 663
SmiMI	CAYNNNNRTG	2 cut(s)	363, 810
Sse9I	AATT	6 cut(s)	59, 224, 425, 709, 1003, 1152
SsiI	CCGC	4 cut(s)	74, 328, 349, 562
SspI	AATATT	3 cut(s)	300, 310, 737
SspMI	CTAG	2 cut(s)	840, 921
StyD4I	CCNGG	4 cut(s)	186, 495, 537, 643
StyI	CCWWGG	2 cut(s)	466, 790
TaiI	ACGT	3 cut(s)	617, 676, 1018
TaqI	TCGA	1 cut(s)	36
TasI	AATT	6 cut(s)	59, 224, 425, 709, 1003, 1152
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	1148
Tru1I	TTAA	2 cut(s)	62, 861
Tru9I	TTAA	2 cut(s)	62, 861
TscAI	CASTG	2 cut(s)	757, 1202
TseFI	GTSAC	3 cut(s)	126, 170, 230
TseI	GCWGC	7 cut(s)	68, 71, 109, 289, 605, 662, 986
Tsp45I	GTSAC	3 cut(s)	126, 170, 230
TspDTI	ATGAA	4 cut(s)	344, 782, 950, 1101
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	757, 1202
XapI	RAATTY	2 cut(s)	425, 709
XceI	RCATGY	1 cut(s)	256
XmnI	GAANNNNTTC	2 cut(s)	195, 737
XspI	CTAG	2 cut(s)	840, 921
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.