Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Reverse (-)

17073673 .. 17075904

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGATGATGTTAGAGTCAAGAAACAGTATGAGAGCTTCAAACTCAGTCCCAGATCTGTCTCTTCAGATCAGTCTTCCTAACTATCACGCCGGAAAACCTCTTCACGGCGGTGACCGGAGCTCCACAAGCAGTGATTCTGGAAGCAGCCTCAGTGACCTGAGCCATGAGAACAACTTCTTCAACAAACCTCTCTTGAGCTTAGGATTTGACCATCATCATCAAAGGCGCTCAAACATGTTCCAACCTCAAATCTACGGTCGAGATTTCAAGAGAAGCTCATCATCAATGGTTGGTCTTAAACGAAGCATTCGTGCTCCAAGAATGAGATGGACTTCTACTCTTCATGCTCACTTCGTCCATGCTGTTCAACTTCTTGGCGGCCATGAAAGAGCAACGCCTAAATCAGTGTTGGAGCTCATGAATGTGAAGGATCTAACCCTAGCTCATGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAATGCACTGATAAAGGATCACCAGGAGAAGGAAAGGTAGAGAAAGAGGCAGAGCAGAGGATAGAGGACAATAATAATAATGAAGAAGCTGATGAAGGAACTGACACAAATTCGCCAAACTCATCATCTGTGCAAAAGACCCAAAGAGCTTCATGGTCATCGACAAAGGAAGTATCTAGGAGCATATCTACACAAGCATATTCTCACTTGGGAACAACTCATCACACTAAGGACAATGAAGAGAAAGAGGATACCAACATTCATCTCAATTTGGATTTCACATTGGGGCGGCCTAGTTGGGGGATGGAATATGCGGAACCCTCCAGTGATTTAACCCTTCTCAAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

276

Amino Acids

30.96

Weight (kDa)

7.31

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	107 - 158	1.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	108, 378, 769, 794
AclWI	GGATC	2 cut(s)	438, 505
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	3 cut(s)	104, 509, 779
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	39, 181, 268, 368
AjnI	CCWGG	1 cut(s)	502
AleI	CACNNNNGTG	1 cut(s)	108
AluBI	AGCT	8 cut(s)	35, 120, 198, 276, 415, 443, 569, 629
AluI	AGCT	8 cut(s)	35, 120, 198, 276, 415, 443, 569, 629
Alw21I	GWGCWC	3 cut(s)	122, 316, 417
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	438, 505
AoxI	GGCC	2 cut(s)	379, 770
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	589
ArsI	GACNNNNNNTTYG	2 cut(s)	241, 273
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	122, 492
BanII	GRGCYC	2 cut(s)	122, 417
BarI	GAAGNNNNNNTAC	2 cut(s)	19, 51
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	3 cut(s)	122, 316, 417
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	3 cut(s)	219, 321, 778
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	3 cut(s)	440, 657, 774
BfoI	RGCGCY	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	724
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	3 cut(s)	145, 379, 770
BlsI	GCNGC	3 cut(s)	146, 380, 771
Bme1390I	CCNGG	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	798
BmrFI	CCNGG	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	787
Bpu10I	CCTNAGC	2 cut(s)	158, 199
BpuEI	CTTGAG	2 cut(s)	214, 806
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 509, 779
Bse1I	ACTGG	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	789
BseLI	CCNNNNNNNGG	3 cut(s)	104, 509, 779
BseMII	CTCAG	3 cut(s)	57, 149, 163
BseNI	ACTGG	1 cut(s)	804
BseXI	GCAGC	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	2 cut(s)	381, 772
BsiEI	CGRYCG	1 cut(s)	259
BsiHKAI	GWGCWC	3 cut(s)	122, 316, 417
BsiSI	CCGG	2 cut(s)	90, 115
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	3 cut(s)	104, 509, 779
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	381, 772
Bsp1286I	GDGCHC	3 cut(s)	122, 316, 417
Bsp143I	GATC	4 cut(s)	52, 66, 430, 497
BspACI	CCGC	4 cut(s)	108, 378, 769, 794
BspANI	GGCC	2 cut(s)	381, 772
BspCNI	CTCAG	3 cut(s)	56, 150, 162
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	798
BspPI	GGATC	2 cut(s)	438, 505
BsrI	ACTGG	1 cut(s)	804
BssMI	GATC	4 cut(s)	52, 66, 430, 497
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	26, 257, 478
Bst6I	CTCTTC	4 cut(s)	66, 105, 345, 714
BstDEI	CTNAG	5 cut(s)	43, 149, 158, 199, 708
BstEII	GGTNACC	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	789
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	4 cut(s)	55, 69, 433, 500
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	52, 66, 430, 497
BstMCI	CGRYCG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	238
BstPI	GGTNACC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	52, 430
BstYI	RGATCY	2 cut(s)	52, 430
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	2 cut(s)	381, 772
BtsCI	GGATG	1 cut(s)	789
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	6 cut(s)	136, 157, 411, 483, 486, 811
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	1 cut(s)	228
CviAII	CATG	8 cut(s)	164, 235, 344, 359, 383, 418, 446, 633
DdeI	CTNAG	5 cut(s)	43, 149, 158, 199, 708
DpnI	GATC	4 cut(s)	54, 68, 432, 499
DpnII	GATC	4 cut(s)	52, 66, 430, 497
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	4 cut(s)	66, 105, 345, 714
EarI	CTCTTC	4 cut(s)	66, 105, 345, 714
Ecl136II	GAGCTC	2 cut(s)	120, 415
Eco24I	GRGCYC	2 cut(s)	122, 417
Eco53kI	GAGCTC	2 cut(s)	120, 415
Eco57I	CTGAAG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	110
EcoICRI	GAGCTC	2 cut(s)	120, 415
EcoO65I	GGTNACC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	502
EcoT38I	GRGCYC	2 cut(s)	122, 417
FaeI	CATG	8 cut(s)	167, 238, 347, 362, 386, 421, 449, 636
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	8 cut(s)	163, 234, 343, 358, 382, 417, 445, 632
Fnu4HI	GCNGC	3 cut(s)	145, 379, 770
FokI	GGATG	1 cut(s)	796
FriOI	GRGCYC	2 cut(s)	122, 417
Fsp4HI	GCNGC	3 cut(s)	145, 379, 770
FspBI	CTAG	3 cut(s)	440, 657, 774
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	3 cut(s)	145, 379, 770
GsuI	CTGGAG	1 cut(s)	787
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	381, 772
HapII	CCGG	2 cut(s)	90, 115
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	8 cut(s)	167, 238, 347, 362, 386, 421, 449, 636
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	14, 134, 454
HpaII	CCGG	2 cut(s)	90, 115
HphI	GGTGA	2 cut(s)	122, 492
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	7 cut(s)	18, 138, 193, 260, 268, 418, 451
HpyAV	CCTTC	4 cut(s)	421, 503, 569, 827
HpyCH4III	ACNGT	3 cut(s)	26, 257, 478
HpyCH4V	TGCA	3 cut(s)	463, 486, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	5 cut(s)	43, 149, 158, 199, 708
Hsp92II	CATG	8 cut(s)	167, 238, 347, 362, 386, 421, 449, 636
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	52, 66, 430, 497
LmnI	GCTCC	5 cut(s)	117, 125, 319, 412, 660
LpnPI	CCDG	8 cut(s)	63, 103, 123, 128, 170, 489, 516, 817
Lsp1109I	GCAGC	1 cut(s)	156
MaeI	CTAG	3 cut(s)	440, 657, 774
MaeIII	GTNAC	3 cut(s)	110, 152, 455
MalI	GATC	4 cut(s)	54, 68, 432, 499
MboI	GATC	4 cut(s)	52, 66, 430, 497
MboII	GAAGA	7 cut(s)	53, 65, 92, 169, 332, 575, 731
MflI	RGATCY	2 cut(s)	52, 430
MhlI	GDGCHC	3 cut(s)	122, 316, 417
MluCI	AATT	2 cut(s)	589, 748
MlyI	GAGTC	2 cut(s)	23, 463
MmeI	TCCRAC	2 cut(s)	265, 390
MnlI	CCTC	9 cut(s)	108, 158, 198, 255, 520, 531, 538, 721, 811
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	2 cut(s)	297, 812
MslI	CAYNNNNRTG	2 cut(s)	108, 422
MspI	CCGG	2 cut(s)	90, 115
MspR9I	CCNGG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	4 cut(s)	52, 66, 430, 497
NlaIII	CATG	8 cut(s)	167, 238, 347, 362, 386, 421, 449, 636
NlaIV	GGNNCC	1 cut(s)	798
NmuCI	GTSAC	3 cut(s)	110, 152, 455
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	108
PagI	TCATGA	1 cut(s)	417
PciI	ACATGT	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PctI	GAATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	146, 380, 771
PleI	GAGTC	2 cut(s)	22, 462
PpsI	GAGTC	2 cut(s)	22, 462
PscI	ACATGT	1 cut(s)	234
Psp124BI	GAGCTC	2 cut(s)	122, 417
Psp6I	CCWGG	1 cut(s)	502
PspEI	GGTNACC	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	798
PsuI	RGATCY	2 cut(s)	52, 430
RseI	CAYNNNNRTG	2 cut(s)	108, 422
SacI	GAGCTC	2 cut(s)	122, 417
SaqAI	TTAA	2 cut(s)	297, 812
SatI	GCNGC	3 cut(s)	145, 379, 770
Sau3AI	GATC	4 cut(s)	52, 66, 430, 497
SchI	GAGTC	2 cut(s)	23, 463
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	3 cut(s)	122, 316, 417
SmiMI	CAYNNNNRTG	2 cut(s)	108, 422
SmlI	CTYRAG	2 cut(s)	193, 821
SmoI	CTYRAG	2 cut(s)	193, 821
Sse9I	AATT	2 cut(s)	589, 748
SsiI	CCGC	4 cut(s)	108, 378, 769, 794
SspMI	CTAG	3 cut(s)	440, 657, 774
SstI	GAGCTC	2 cut(s)	122, 417
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	3 cut(s)	26, 257, 478
TaqI	TCGA	2 cut(s)	259, 641
TasI	AATT	2 cut(s)	589, 748
TauI	GCSGC	2 cut(s)	381, 772
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	297, 812
Tru9I	TTAA	2 cut(s)	297, 812
TscAI	CASTG	6 cut(s)	136, 157, 411, 483, 493, 811
TseFI	GTSAC	3 cut(s)	110, 152, 455
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	3 cut(s)	110, 152, 455
TspDTI	ATGAA	8 cut(s)	332, 399, 434, 576, 588, 621, 731, 732
TspRI	CASTG	6 cut(s)	136, 157, 411, 483, 493, 811
XapI	RAATTY	1 cut(s)	589
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	3 cut(s)	440, 657, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.