Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Reverse (-)

2395943 .. 2399095

Gene Structure 3153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1034000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGCTCAAACCCTAGCATGATGAAAAAAATTTCTTTACCCTTGCCTGATCTCTCTTTACAGATCAGCCCTCCATCATCTGCGGATGATCTTCCATACGATATCGGAGTAACGAGAAAAGCACTTTACAGTACAGACAGGAGCTCAGCCACCGACTCCGGCAGCAGCGGAAGCGATTTGAGTCAGGAACATGGCTTCTACCACCTTGAAAGGAGTGGCAGTTACAATCTTGCTTCGGCGGTTGAGGAGCCAAAGTTGAGTTTAGGGTTTGATGAAAGGAAAGATCATCATCACCATATGGCTAGTCCTCCTCCTCCAGCCCTCCAAATGCCAAGAAACTTCAACAGTAATCATTGCTTCAACCACCACCACCCTCAAATCTACGGCCGCGAGTTCAAGAGAAGCGCGAGAACGGTTGGTGTTGTGAAAAGAAGCATCAGAGCTCCAAGAATGCGGTGGACTACAACCCTCCATGCCCATTTCGTTCATGCAGTGCAGCTTCTTGGCGGCCATGAAAGGGCAACGCCAAAATCTGTGTTAGAGTTGATGAATGTGAAGGATCTAACCCTTGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACAGACAATAAAGGAACAGGTCATGAAGGACAAACAGAAATCGGTTTGAGTCAAAATCCAGAAATCAATCCAGCACTTCAAGCCAATGGACAATTATCTTGTGACAAAGTTAACACTAATAGAGGTTTGCGGTCTTCTTCGACGGAGATCACAACTGGGAGCTCTAATTTAAGACATGAAGATGGTTTGACATATTCTCATTCCCCACCATCAAATGGCACTAAGGTGGAAGAAGACGATTCAGGCCGCCGCCATGGGTATGCTCAAAGCATGAAAGAGAGGCCGACGTTGGATTGTAGCTCCTTGGCATCGTCGGATATGTACCTTAATCTAGAGTTCACTCTTGGAAGGCCAAGTGGCGAGTGGACGCTGCTCAATAGCCTCAACCTTCAAATGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.42

Weight (kDa)

7.87

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	150 - 201	1.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccII	CGCG	2 cut(s)	390, 407
AciI	CCGC	9 cut(s)	83, 168, 239, 388, 454, 507, 745, 862, 865
AclWI	GGATC	1 cut(s)	567
AcoI	YGGCCR	2 cut(s)	385, 508
AcsI	RAATTY	1 cut(s)	30
AcvI	CACGTG	1 cut(s)	577
AfaI	GTAC	2 cut(s)	133, 938
AfiI	CCNNNNNNNGG	2 cut(s)	517, 830
AgsI	TTSAA	6 cut(s)	209, 343, 361, 397, 695, 1007
AleI	CACNNNNGTG	1 cut(s)	839
AluBI	AGCT	6 cut(s)	6, 144, 443, 499, 777, 915
AluI	AGCT	6 cut(s)	6, 144, 443, 499, 777, 915
Alw21I	GWGCWC	5 cut(s)	8, 146, 445, 617, 779
AlwI	GGATC	1 cut(s)	567
AoxI	GGCC	5 cut(s)	385, 508, 859, 896, 965
ApeKI	GCWGC	4 cut(s)	162, 165, 496, 985
ApoI	RAATTY	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	284
BanII	GRGCYC	4 cut(s)	8, 146, 445, 779
BbrPI	CACGTG	1 cut(s)	577
BbsI	GAAGAC	2 cut(s)	741, 855
Bbv12I	GWGCWC	5 cut(s)	8, 146, 445, 617, 779
BbvI	GCAGC	4 cut(s)	174, 177, 508, 972
BccI	CCATC	3 cut(s)	82, 791, 832
BceAI	ACGGC	1 cut(s)	400
BfaI	CTAG	3 cut(s)	15, 303, 947
BisI	GCNGC	8 cut(s)	163, 166, 388, 497, 508, 862, 865, 986
BlpI	GCTNAGC	1 cut(s)	145
BlsI	GCNGC	8 cut(s)	164, 167, 389, 498, 509, 863, 866, 987
BmiI	GGNNCC	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	2 cut(s)	444, 932
BmuI	ACTGGG	1 cut(s)	780
BpiI	GAAGAC	2 cut(s)	741, 855
BpmI	CTGGAG	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	868, 918
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 239, 269
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 830
Bse1I	ACTGG	1 cut(s)	775
Bse3DI	GCAATG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	868, 918
BseGI	GGATG	1 cut(s)	91
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	517, 830
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	3 cut(s)	260, 300, 303
BseX3I	CGGCCG	1 cut(s)	385
BseXI	GCAGC	4 cut(s)	174, 177, 508, 972
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	2 cut(s)	390, 407
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	5 cut(s)	387, 510, 861, 898, 967
BsiEI	CGRYCG	1 cut(s)	388
BsiHKAI	GWGCWC	5 cut(s)	8, 146, 445, 617, 779
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	517, 830
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	5 cut(s)	387, 510, 861, 898, 967
Bsp1286I	GDGCHC	5 cut(s)	8, 146, 445, 617, 779
Bsp143I	GATC	6 cut(s)	49, 63, 88, 283, 559, 762
Bsp1720I	GCTNAGC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	868
BspACI	CCGC	9 cut(s)	83, 168, 239, 388, 454, 507, 745, 862, 865
BspANI	GGCC	5 cut(s)	387, 510, 861, 898, 967
BspCNI	CTCAG	1 cut(s)	158
BspFNI	CGCG	2 cut(s)	390, 407
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	567
BspQI	GCTCTTC	1 cut(s)	605
BsrDI	GCAATG	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	2 cut(s)	868, 918
BssMI	GATC	6 cut(s)	49, 63, 88, 283, 559, 762
BssT1I	CCWWGG	2 cut(s)	868, 918
Bst4CI	ACNGT	4 cut(s)	131, 347, 415, 607
Bst6I	CTCTTC	2 cut(s)	575, 605
BstBAI	YACGTR	1 cut(s)	577
BstDEI	CTNAG	2 cut(s)	145, 837
BstDSI	CCRYGG	1 cut(s)	868
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	2 cut(s)	390, 407
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	6 cut(s)	52, 66, 91, 286, 562, 765
BstMBI	GATC	6 cut(s)	49, 63, 88, 283, 559, 762
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 695
BstUI	CGCG	2 cut(s)	390, 407
BstV1I	GCAGC	4 cut(s)	174, 177, 508, 972
BstV2I	GAAGAC	2 cut(s)	741, 855
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BstZI	CGGCCG	1 cut(s)	385
BsuRI	GGCC	5 cut(s)	387, 510, 861, 898, 967
BtgI	CCRYGG	1 cut(s)	868
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	498, 612
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	1 cut(s)	407
CseI	GACGC	1 cut(s)	991
Csp6I	GTAC	2 cut(s)	132, 937
CviAII	CATG	9 cut(s)	19, 191, 473, 488, 512, 638, 791, 869, 886
CviQI	GTAC	2 cut(s)	132, 937
DdeI	CTNAG	2 cut(s)	145, 837
DpnI	GATC	6 cut(s)	51, 65, 90, 285, 561, 764
DpnII	GATC	6 cut(s)	49, 63, 88, 283, 559, 762
EaeI	YGGCCR	2 cut(s)	385, 508
EagI	CGGCCG	1 cut(s)	385
Eam1104I	CTCTTC	2 cut(s)	575, 605
EarI	CTCTTC	2 cut(s)	575, 605
Ecl136II	GAGCTC	4 cut(s)	6, 144, 443, 777
EclXI	CGGCCG	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	868, 918
Eco24I	GRGCYC	4 cut(s)	8, 146, 445, 779
Eco32I	GATATC	1 cut(s)	103
Eco52I	CGGCCG	1 cut(s)	385
Eco53kI	GAGCTC	4 cut(s)	6, 144, 443, 777
Eco72I	CACGTG	1 cut(s)	577
EcoICRI	GAGCTC	4 cut(s)	6, 144, 443, 777
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	868, 918
EcoT38I	GRGCYC	4 cut(s)	8, 146, 445, 779
ErhI	CCWWGG	2 cut(s)	868, 918
FaeI	CATG	9 cut(s)	22, 194, 476, 491, 515, 641, 794, 872, 889
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FatI	CATG	9 cut(s)	18, 190, 472, 487, 511, 637, 790, 868, 885
FauNDI	CATATG	1 cut(s)	297
Fnu4HI	GCNGC	8 cut(s)	163, 166, 388, 497, 508, 862, 865, 986
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	4 cut(s)	8, 146, 445, 779
Fsp4HI	GCNGC	8 cut(s)	163, 166, 388, 497, 508, 862, 865, 986
FspBI	CTAG	3 cut(s)	15, 303, 947
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	8 cut(s)	163, 166, 388, 497, 508, 862, 865, 986
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	5 cut(s)	387, 510, 861, 898, 967
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	991
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	9 cut(s)	22, 194, 476, 491, 515, 641, 794, 872, 889
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	5 cut(s)	155, 181, 583, 664, 854
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	4 cut(s)	459, 727, 954, 981
Hpy188I	TCNGA	3 cut(s)	107, 440, 931
Hpy188III	TCNNGA	5 cut(s)	185, 397, 638, 674, 947
Hpy8I	GTNNAC	4 cut(s)	459, 727, 954, 981
Hpy99I	CGWCG	3 cut(s)	760, 904, 931
HpyAV	CCTTC	4 cut(s)	550, 635, 957, 1013
HpyCH4III	ACNGT	4 cut(s)	131, 347, 415, 607
HpyCH4IV	ACGT	2 cut(s)	576, 902
HpyCH4V	TGCA	3 cut(s)	491, 496, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 695
HpyF3I	CTNAG	2 cut(s)	145, 837
HpySE526I	ACGT	2 cut(s)	576, 902
Hsp92II	CATG	9 cut(s)	22, 194, 476, 491, 515, 641, 794, 872, 889
HspAI	GCGC	1 cut(s)	405
KspAI	GTTAAC	1 cut(s)	727
Kzo9I	GATC	6 cut(s)	49, 63, 88, 283, 559, 762
LguI	GCTCTTC	1 cut(s)	605
LmnI	GCTCC	5 cut(s)	141, 247, 448, 774, 920
Lsp1109I	GCAGC	4 cut(s)	174, 177, 508, 972
LweI	GCATC	2 cut(s)	444, 932
MaeI	CTAG	3 cut(s)	15, 303, 947
MaeII	ACGT	2 cut(s)	576, 902
MaeIII	GTNAC	4 cut(s)	109, 221, 584, 716
MalI	GATC	6 cut(s)	51, 65, 90, 285, 561, 764
MboI	GATC	6 cut(s)	49, 63, 88, 283, 559, 762
MboII	GAAGA	8 cut(s)	83, 592, 622, 741, 744, 806, 857, 860
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	5 cut(s)	8, 146, 445, 617, 779
MluCI	AATT	3 cut(s)	30, 707, 781
MlyI	GAGTC	4 cut(s)	149, 190, 592, 673
MmeI	TCCRAC	2 cut(s)	885, 909
MseI	TTAA	4 cut(s)	726, 785, 942, 1015
MslI	CAYNNNNRTG	3 cut(s)	795, 839, 873
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	456
MvnI	CGCG	2 cut(s)	390, 407
MwoI	GCNNNNNNNGC	2 cut(s)	171, 695
NcoI	CCATGG	1 cut(s)	868
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	6 cut(s)	49, 63, 88, 283, 559, 762
NlaIII	CATG	9 cut(s)	22, 194, 476, 491, 515, 641, 794, 872, 889
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	2 cut(s)	584, 716
OliI	CACNNNNGTG	1 cut(s)	839
PagI	TCATGA	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	605
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	854
PflMI	CCANNNNNTGG	1 cut(s)	830
PkrI	GCNGC	8 cut(s)	164, 167, 389, 498, 509, 863, 866, 987
PleI	GAGTC	4 cut(s)	149, 189, 591, 672
PmaCI	CACGTG	1 cut(s)	577
PmlI	CACGTG	1 cut(s)	577
PpsI	GAGTC	4 cut(s)	149, 189, 591, 672
Ppu21I	YACGTR	1 cut(s)	577
Psp124BI	GAGCTC	4 cut(s)	8, 146, 445, 779
PspCI	CACGTG	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	2 cut(s)	133, 938
RsaNI	GTAC	2 cut(s)	132, 937
RseI	CAYNNNNRTG	3 cut(s)	795, 839, 873
SacI	GAGCTC	4 cut(s)	8, 146, 445, 779
SapI	GCTCTTC	1 cut(s)	605
SaqAI	TTAA	4 cut(s)	726, 785, 942, 1015
SatI	GCNGC	8 cut(s)	163, 166, 388, 497, 508, 862, 865, 986
Sau3AI	GATC	6 cut(s)	49, 63, 88, 283, 559, 762
SchI	GAGTC	4 cut(s)	149, 190, 592, 673
SduI	GDGCHC	5 cut(s)	8, 146, 445, 617, 779
SfaNI	GCATC	2 cut(s)	444, 932
SmiMI	CAYNNNNRTG	3 cut(s)	795, 839, 873
Sse9I	AATT	3 cut(s)	30, 707, 781
SsiI	CCGC	9 cut(s)	83, 168, 239, 388, 454, 507, 745, 862, 865
SspMI	CTAG	3 cut(s)	15, 303, 947
SstI	GAGCTC	4 cut(s)	8, 146, 445, 779
StyI	CCWWGG	2 cut(s)	868, 918
TaaI	ACNGT	4 cut(s)	131, 347, 415, 607
TaiI	ACGT	2 cut(s)	579, 905
TaqI	TCGA	1 cut(s)	755
TasI	AATT	3 cut(s)	30, 707, 781
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	4 cut(s)	390, 510, 864, 867
TfiI	GAWTC	1 cut(s)	854
Tru1I	TTAA	4 cut(s)	726, 785, 942, 1015
Tru9I	TTAA	4 cut(s)	726, 785, 942, 1015
TscAI	CASTG	2 cut(s)	498, 612
TseFI	GTSAC	2 cut(s)	584, 716
TseI	GCWGC	4 cut(s)	162, 165, 496, 985
Tsp45I	GTSAC	2 cut(s)	584, 716
TspDTI	ATGAA	8 cut(s)	38, 288, 476, 528, 563, 654, 807, 902
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	2 cut(s)	498, 612
Van91I	CCANNNNNTGG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	30
XbaI	TCTAGA	1 cut(s)	946
XcmI	CCANNNNNNNNNTGG	2 cut(s)	453, 975
XspI	CTAG	3 cut(s)	15, 303, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.