Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Forward (+)

59388120 .. 59390356

Gene Structure 2237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG406600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATGTACCTGAGCTCAAACTCAAACCCTATAATGAGAACTACTTCTTCACCCTTGCCTGATCTCTCTTTACAGATCAGCCCACCATCAGATCACTACGAGATGGGTTTAGCAAGAAAAGCACTTAACGGTGATAGGAGCTCAACCACCGACTCCACTAGTAGTGGGAGTGATTTGAGTCATGAAAATGTTCTCTACCACTTGGATCAGAGGACTAATTATAATCTCACTTCCGCTGCGCCCGAGCCAAATTTGAGTTTAGGTCTTGAAATGAAGGATATCATGAGTAGTAGTACTAGTTCAACACCTCTACTGCCAAGAAACTTCAATCATCATCATCCTCAAATCTACGGCCGAGATTTCAAAAGAAGCGCCAGAACTGTCGGGAATGTGAAAAGAAGCGTCAGAGCTCCGAGGATGCGGTGGACTACAACCCTTCATGCCCATTTCGTTCATGCAGTCCAGCTTCTCGGCGGCCATGAAAGAGCAACGCCAAAATCGGTGTTAGAGTTGATGAATGTGAAGGATCTAACTCTTGCACACGTGAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACCACAAAGGAACAGGAAACGAAGGGCAGCAGATAGATATGGGTTTGGACCAAAATCCAGGGAATAATAATGCTCAAGTAAATGGATCAGTACTACCTTGTGATTCTGAGAAAGCTATTAATTCACCTCCAACACTGCTTCTGCAAAATCCGAGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

248

Amino Acids

27.39

Weight (kDa)

9.24

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	139 - 190	7.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	732
AciI	CCGC	3 cut(s)	234, 421, 474
AclWI	GGATC	3 cut(s)	213, 534, 679
AcoI	YGGCCR	2 cut(s)	352, 475
AcsI	RAATTY	1 cut(s)	250
AcvI	CACGTG	1 cut(s)	544
AfaI	GTAC	3 cut(s)	8, 295, 678
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	4 cut(s)	269, 303, 328, 364
AhlI	ACTAGT	2 cut(s)	158, 296
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	5 cut(s)	15, 141, 410, 466, 701
AluI	AGCT	5 cut(s)	15, 141, 410, 466, 701
Alw21I	GWGCWC	4 cut(s)	17, 143, 412, 584
AlwI	GGATC	3 cut(s)	213, 534, 679
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	352, 475
ApeKI	GCWGC	2 cut(s)	236, 613
ApoI	RAATTY	1 cut(s)	250
AseI	ATTAAT	1 cut(s)	705
Asp700I	GAANNNNTTC	2 cut(s)	43, 189
AspLEI	GCGC	2 cut(s)	241, 374
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	42, 143, 702
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	634
BanII	GRGCYC	3 cut(s)	17, 143, 412
BbrPI	CACGTG	1 cut(s)	544
Bbv12I	GWGCWC	4 cut(s)	17, 143, 412, 584
BbvI	GCAGC	2 cut(s)	223, 625
BccI	CCATC	2 cut(s)	94, 97
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	645
BcuI	ACTAGT	2 cut(s)	158, 296
BfaI	CTAG	2 cut(s)	159, 297
BfoI	RGCGCY	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	732
BisI	GCNGC	3 cut(s)	237, 475, 614
BlsI	GCNGC	3 cut(s)	238, 476, 615
BmcAI	AGTACT	2 cut(s)	295, 678
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	634
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	413, 644
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	413, 644
BseGI	GGATG	2 cut(s)	337, 423
BseMII	CTCAG	1 cut(s)	684
BseX3I	CGGCCG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	223, 625
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	354, 477
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	4 cut(s)	17, 143, 412, 584
BsiHKCI	CYCGRG	1 cut(s)	242
BsnI	GGCC	2 cut(s)	354, 477
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	4 cut(s)	17, 143, 412, 584
Bsp143I	GATC	6 cut(s)	61, 75, 91, 205, 526, 671
BspACI	CCGC	3 cut(s)	234, 421, 474
BspANI	GGCC	2 cut(s)	354, 477
BspCNI	CTCAG	1 cut(s)	685
BspHI	TCATGA	2 cut(s)	181, 282
BspMI	ACCTGC	1 cut(s)	732
BspPI	GGATC	3 cut(s)	213, 534, 679
BspQI	GCTCTTC	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	413, 644
BssMI	GATC	6 cut(s)	61, 75, 91, 205, 526, 671
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	3 cut(s)	131, 382, 574
Bst6I	CTCTTC	2 cut(s)	542, 572
BstBAI	YACGTR	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	11, 693
BstF5I	GGATG	2 cut(s)	337, 423
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	241, 374
BstKTI	GATC	6 cut(s)	64, 78, 94, 208, 529, 674
BstMBI	GATC	6 cut(s)	61, 75, 91, 205, 526, 671
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	223, 625
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	354, 477
BtsCI	GGATG	2 cut(s)	337, 423
BtsI	GCAGTG	1 cut(s)	719
BtsIMutI	CAGTG	3 cut(s)	579, 582, 719
BveI	ACCTGC	1 cut(s)	732
CciI	TCATGA	2 cut(s)	181, 282
CfoI	GCGC	2 cut(s)	241, 374
Cfr13I	GGNCC	1 cut(s)	634
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	3 cut(s)	7, 294, 677
CviAII	CATG	5 cut(s)	182, 283, 440, 455, 479
CviJI	RGCY	9 cut(s)	15, 81, 141, 247, 354, 410, 466, 477, 701
CviKI_1	RGCY	9 cut(s)	15, 81, 141, 247, 354, 410, 466, 477, 701
CviQI	GTAC	3 cut(s)	7, 294, 677
DdeI	CTNAG	2 cut(s)	11, 693
DpnI	GATC	6 cut(s)	63, 77, 93, 207, 528, 673
DpnII	GATC	6 cut(s)	61, 75, 91, 205, 526, 671
EaeI	YGGCCR	2 cut(s)	352, 475
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	542, 572
EarI	CTCTTC	2 cut(s)	542, 572
Ecl136II	GAGCTC	3 cut(s)	15, 141, 410
EclXI	CGGCCG	1 cut(s)	352
Eco24I	GRGCYC	3 cut(s)	17, 143, 412
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	634
Eco52I	CGGCCG	1 cut(s)	352
Eco53kI	GAGCTC	3 cut(s)	15, 141, 410
Eco72I	CACGTG	1 cut(s)	544
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	3 cut(s)	15, 141, 410
EcoRII	CCWGG	1 cut(s)	643
EcoRV	GATATC	1 cut(s)	280
EcoT38I	GRGCYC	3 cut(s)	17, 143, 412
FaeI	CATG	5 cut(s)	185, 286, 443, 458, 482
FaiI	YATR	9 cut(s)	32, 183, 222, 284, 441, 456, 480, 567, 626
FatI	CATG	5 cut(s)	181, 282, 439, 454, 478
Fnu4HI	GCNGC	3 cut(s)	237, 475, 614
FokI	GGATG	2 cut(s)	324, 430
FriOI	GRGCYC	3 cut(s)	17, 143, 412
Fsp4HI	GCNGC	3 cut(s)	237, 475, 614
FspBI	CTAG	2 cut(s)	159, 297
GlaI	GCGC	2 cut(s)	240, 373
GluI	GCNGC	3 cut(s)	237, 475, 614
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	354, 477
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	2 cut(s)	241, 374
Hin1II	CATG	5 cut(s)	185, 286, 443, 458, 482
Hin6I	GCGC	2 cut(s)	239, 372
HinP1I	GCGC	2 cut(s)	239, 372
HinfI	GANTC	4 cut(s)	152, 178, 550, 689
HphI	GGTGA	3 cut(s)	42, 143, 702
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	6 cut(s)	91, 210, 407, 414, 694, 738
Hpy188III	TCNNGA	4 cut(s)	182, 266, 283, 385
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	4 cut(s)	268, 446, 517, 602
HpyCH4III	ACNGT	3 cut(s)	131, 382, 574
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	4 cut(s)	458, 539, 559, 730
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	11, 693
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	5 cut(s)	185, 286, 443, 458, 482
HspAI	GCGC	2 cut(s)	239, 372
Kzo9I	GATC	6 cut(s)	61, 75, 91, 205, 526, 671
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	2 cut(s)	138, 415
LpnPI	CCDG	8 cut(s)	23, 72, 388, 476, 585, 630, 657, 727
Lsp1109I	GCAGC	2 cut(s)	223, 625
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	2 cut(s)	159, 297
MaeII	ACGT	1 cut(s)	543
MalI	GATC	6 cut(s)	63, 77, 93, 207, 528, 673
MboI	GATC	6 cut(s)	61, 75, 91, 205, 526, 671
MboII	GAAGA	3 cut(s)	39, 559, 589
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	4 cut(s)	17, 143, 412, 584
MluCI	AATT	3 cut(s)	217, 250, 706
MlyI	GAGTC	3 cut(s)	146, 187, 559
MmeI	TCCRAC	1 cut(s)	740
MnlI	CCTC	5 cut(s)	204, 318, 351, 408, 723
MroXI	GAANNNNTTC	2 cut(s)	43, 189
MseI	TTAA	2 cut(s)	126, 705
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	6 cut(s)	61, 75, 91, 205, 526, 671
NlaIII	CATG	5 cut(s)	185, 286, 443, 458, 482
NmeAIII	GCCGAG	2 cut(s)	380, 450
PagI	TCATGA	2 cut(s)	181, 282
PciSI	GCTCTTC	1 cut(s)	572
PdmI	GAANNNNTTC	2 cut(s)	43, 189
PfeI	GAWTC	1 cut(s)	689
PkrI	GCNGC	3 cut(s)	238, 476, 615
PleI	GAGTC	3 cut(s)	146, 186, 558
PmaCI	CACGTG	1 cut(s)	544
PmlI	CACGTG	1 cut(s)	544
PpsI	GAGTC	3 cut(s)	146, 186, 558
Ppu21I	YACGTR	1 cut(s)	544
PshBI	ATTAAT	1 cut(s)	705
PsiI	TTATAA	1 cut(s)	222
Psp124BI	GAGCTC	3 cut(s)	17, 143, 412
Psp6I	CCWGG	1 cut(s)	643
PspCI	CACGTG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	634
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PsuI	RGATCY	1 cut(s)	526
RsaI	GTAC	3 cut(s)	8, 295, 678
RsaNI	GTAC	3 cut(s)	7, 294, 677
RseI	CAYNNNNRTG	1 cut(s)	186
SacI	GAGCTC	3 cut(s)	17, 143, 412
SapI	GCTCTTC	1 cut(s)	572
SaqAI	TTAA	2 cut(s)	126, 705
SatI	GCNGC	3 cut(s)	237, 475, 614
Sau3AI	GATC	6 cut(s)	61, 75, 91, 205, 526, 671
Sau96I	GGNCC	1 cut(s)	634
ScaI	AGTACT	2 cut(s)	295, 678
SchI	GAGTC	3 cut(s)	146, 187, 559
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	4 cut(s)	17, 143, 412, 584
SfaNI	GCATC	1 cut(s)	408
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
SpeI	ACTAGT	2 cut(s)	158, 296
Sse9I	AATT	3 cut(s)	217, 250, 706
SsiI	CCGC	3 cut(s)	234, 421, 474
SspMI	CTAG	2 cut(s)	159, 297
SstI	GAGCTC	3 cut(s)	17, 143, 412
StyD4I	CCNGG	1 cut(s)	643
TaaI	ACNGT	3 cut(s)	131, 382, 574
TaiI	ACGT	1 cut(s)	546
TasI	AATT	3 cut(s)	217, 250, 706
TatI	WGTACW	2 cut(s)	293, 676
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	2 cut(s)	126, 705
Tru9I	TTAA	2 cut(s)	126, 705
TscAI	CASTG	3 cut(s)	579, 589, 726
TseI	GCWGC	2 cut(s)	236, 613
TspDTI	ATGAA	6 cut(s)	198, 287, 428, 443, 495, 530
TspRI	CASTG	3 cut(s)	579, 589, 726
VpaK11BI	GGWCC	1 cut(s)	634
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	1 cut(s)	250
XmnI	GAANNNNTTC	2 cut(s)	43, 189
XspI	CTAG	2 cut(s)	159, 297
ZrmI	AGTACT	2 cut(s)	295, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.