Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8480485.1

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Reverse (-)

360 .. 1007

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8480485.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgagaactacttcttcacccttgcctgatctctctttacagatcagcccaccatcagatcactacgagatgggtttagcaagaaaagcacttaacggtgataggagctcaaccaccgactccactagtagtgggagtgatttgagtcatgaaaacgttctctaccacttggatcagaggactaattataatctcacttccgctgagcccgagccaaatttgagtttaggtcttgaaatgaaggatatcattagtagtagtactagttcaacacctctactgccaagaaacttcaatcatcatcatcctcaaatctacggccgagatttcaaaagaagcgccagaactgtcgggaatgtgaaaagaagcgtcagagctccgaggatgcggtggactacaacccttcatgcccatttcgttcatgcagtccagcttctcggcggccatgaaagagcaacgccaaaatcggtgttagagttgatgaatgtgaaggatctaactcttgcacacgtgaagagtcatttgcaggtgggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

178

Amino Acids

19.81

Weight (kDa)

9.57

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AarI	CACCTGC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	517
AciI	CCGC	3 cut(s)	201, 388, 441
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	2 cut(s)	180, 501
AcoI	YGGCCR	2 cut(s)	319, 442
AcsI	RAATTY	1 cut(s)	217
AcvI	CACGTG	1 cut(s)	511
AfaI	GTAC	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	4 cut(s)	236, 270, 295, 331
AhlI	ACTAGT	2 cut(s)	125, 263
AluBI	AGCT	3 cut(s)	108, 377, 433
AluI	AGCT	3 cut(s)	108, 377, 433
Alw21I	GWGCWC	2 cut(s)	110, 379
AlwI	GGATC	2 cut(s)	180, 501
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	319, 442
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	2 cut(s)	10, 156
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	9, 110
AvaI	CYCGRG	1 cut(s)	209
BanII	GRGCYC	3 cut(s)	110, 210, 379
BbrPI	CACGTG	1 cut(s)	511
Bbv12I	GWGCWC	2 cut(s)	110, 379
BccI	CCATC	2 cut(s)	61, 64
BceAI	ACGGC	1 cut(s)	334
BcuI	ACTAGT	2 cut(s)	125, 263
BfaI	CTAG	3 cut(s)	126, 264, 535
BfoI	RGCGCY	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	1 cut(s)	442
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	443
BmcAI	AGTACT	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	2 cut(s)	304, 390
BseMII	CTCAG	1 cut(s)	195
BseX3I	CGGCCG	1 cut(s)	319
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	321, 444
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	110, 379
BsiHKCI	CYCGRG	1 cut(s)	209
BsnI	GGCC	2 cut(s)	321, 444
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	3 cut(s)	110, 210, 379
Bsp143I	GATC	5 cut(s)	28, 42, 58, 172, 493
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	201, 388, 441
BspANI	GGCC	2 cut(s)	321, 444
BspCNI	CTCAG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	2 cut(s)	180, 501
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	5 cut(s)	28, 42, 58, 172, 493
Bst4CI	ACNGT	2 cut(s)	98, 349
Bst6I	CTCTTC	1 cut(s)	509
BstBAI	YACGTR	1 cut(s)	511
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	304, 390
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	5 cut(s)	31, 45, 61, 175, 496
BstMBI	GATC	5 cut(s)	28, 42, 58, 172, 493
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BstZI	CGGCCG	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	321, 444
BtsCI	GGATG	2 cut(s)	304, 390
BveI	ACCTGC	1 cut(s)	517
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	1 cut(s)	341
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	4 cut(s)	149, 407, 422, 446
CviJI	RGCY	9 cut(s)	48, 108, 208, 214, 321, 377, 433, 444, 534
CviKI_1	RGCY	9 cut(s)	48, 108, 208, 214, 321, 377, 433, 444, 534
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	5 cut(s)	30, 44, 60, 174, 495
DpnII	GATC	5 cut(s)	28, 42, 58, 172, 493
EaeI	YGGCCR	2 cut(s)	319, 442
EagI	CGGCCG	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Ecl136II	GAGCTC	2 cut(s)	108, 377
EclXI	CGGCCG	1 cut(s)	319
Eco24I	GRGCYC	3 cut(s)	110, 210, 379
Eco32I	GATATC	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	319
Eco53kI	GAGCTC	2 cut(s)	108, 377
Eco72I	CACGTG	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	2 cut(s)	108, 377
EcoRV	GATATC	1 cut(s)	247
EcoT38I	GRGCYC	3 cut(s)	110, 210, 379
FaeI	CATG	4 cut(s)	152, 410, 425, 449
FaiI	YATR	5 cut(s)	150, 189, 408, 423, 447
FatI	CATG	4 cut(s)	148, 406, 421, 445
Fnu4HI	GCNGC	1 cut(s)	442
FokI	GGATG	2 cut(s)	291, 397
FriOI	GRGCYC	3 cut(s)	110, 210, 379
Fsp4HI	GCNGC	1 cut(s)	442
FspBI	CTAG	3 cut(s)	126, 264, 535
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	1 cut(s)	442
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	321, 444
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	4 cut(s)	152, 410, 425, 449
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	3 cut(s)	119, 145, 517
HphI	GGTGA	2 cut(s)	9, 110
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	4 cut(s)	58, 177, 374, 381
Hpy188III	TCNNGA	3 cut(s)	149, 233, 352
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	3 cut(s)	235, 413, 484
HpyCH4III	ACNGT	2 cut(s)	98, 349
HpyCH4IV	ACGT	2 cut(s)	156, 510
HpyCH4V	TGCA	3 cut(s)	425, 506, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	156, 510
Hsp92II	CATG	4 cut(s)	152, 410, 425, 449
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	5 cut(s)	28, 42, 58, 172, 493
LmnI	GCTCC	2 cut(s)	105, 382
LpnPI	CCDG	4 cut(s)	39, 355, 443, 512
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	3 cut(s)	126, 264, 535
MaeII	ACGT	2 cut(s)	156, 510
MalI	GATC	5 cut(s)	30, 44, 60, 174, 495
MboI	GATC	5 cut(s)	28, 42, 58, 172, 493
MboII	GAAGA	2 cut(s)	6, 526
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	3 cut(s)	110, 210, 379
MluCI	AATT	2 cut(s)	184, 217
MlyI	GAGTC	3 cut(s)	113, 154, 526
MnlI	CCTC	4 cut(s)	171, 285, 318, 375
MroXI	GAANNNNTTC	2 cut(s)	10, 156
MseI	TTAA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	5 cut(s)	28, 42, 58, 172, 493
NlaIII	CATG	4 cut(s)	152, 410, 425, 449
NmeAIII	GCCGAG	2 cut(s)	347, 417
PagI	TCATGA	1 cut(s)	148
PaqCI	CACCTGC	1 cut(s)	517
PdmI	GAANNNNTTC	2 cut(s)	10, 156
PkrI	GCNGC	1 cut(s)	443
PleI	GAGTC	3 cut(s)	113, 153, 525
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	3 cut(s)	113, 153, 525
Ppu21I	YACGTR	1 cut(s)	511
PsiI	TTATAA	1 cut(s)	189
Psp124BI	GAGCTC	2 cut(s)	110, 379
Psp1406I	AACGTT	1 cut(s)	156
PspCI	CACGTG	1 cut(s)	511
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SacI	GAGCTC	2 cut(s)	110, 379
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	442
Sau3AI	GATC	5 cut(s)	28, 42, 58, 172, 493
ScaI	AGTACT	1 cut(s)	262
SchI	GAGTC	3 cut(s)	113, 154, 526
SduI	GDGCHC	3 cut(s)	110, 210, 379
SetI	ASST	8 cut(s)	110, 159, 232, 277, 379, 435, 513, 531
SfaNI	GCATC	1 cut(s)	375
SpeI	ACTAGT	2 cut(s)	125, 263
Sse9I	AATT	2 cut(s)	184, 217
SsiI	CCGC	3 cut(s)	201, 388, 441
SspMI	CTAG	3 cut(s)	126, 264, 535
SstI	GAGCTC	2 cut(s)	110, 379
TaaI	ACNGT	2 cut(s)	98, 349
TaiI	ACGT	2 cut(s)	159, 513
TasI	AATT	2 cut(s)	184, 217
TatI	WGTACW	1 cut(s)	260
TauI	GCSGC	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TspDTI	ATGAA	6 cut(s)	165, 254, 395, 410, 462, 497
XapI	RAATTY	1 cut(s)	217
XmnI	GAANNNNTTC	2 cut(s)	10, 156
XspI	CTAG	3 cut(s)	126, 264, 535
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.