Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Reverse (-)

2468310 .. 2471500

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g03140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAAGATCATCATCACCATATGGCTAGTCCTCTTCCTCCAGCCCTCCAAATGCCAAGCAACTTCAACAGTAACCATTACTTCAACCACCACCACCACCACCCGCAAATATACGGCCGCGAGTTCAAGAGAAGCGCGAGAACAGTTGGTGGTGTGAAAAGAAGCATCAGAGCTCCTAGAATGCGGTGGACTACAACCCTCCATGCCCATTTCGTTCATGCAGTGCAGCTTCTTGGCGGCCATGAAAGAGCAACGCCAAAATCTGTGTTAGAATTGATGAATGTCAAGGATCTAACCCTTGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAATAAAGGAACAGGTCATGAAGGGCAAACAGACATGGATTTGAATCAAAATCCAGGAACTAATCCAGCACTTCAAATAAATGGACAATTATCTTGTGAGAAAGCTAATATTAATAGAGGTTCATGGCCTTCTTCGACGGAGATGAATGGAAGCTCTAATTTAAGACATGGACATGGTTTGACATATTCTCATTCCCCACCTTCAAATGGCACCAAGGTTGAAGAAGAGGACTCAGGCCGCCATGTGTATGACCAAAGCATGAAGGAGAGGCCGATGTTGGATTGTAGCTCCTTGGCATCGTCGGATATGTACCTTAATCTAGAGTTCACTCTTGGAAGGCCAAGTGGCGAGTGGACTGTGCTCAATAGCCTCAACCTGCAAATGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

247

Amino Acids

27.68

Weight (kDa)

9.1

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	560
AccII	CGCG	2 cut(s)	120, 137
AciI	CCGC	5 cut(s)	104, 118, 184, 237, 589
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	2 cut(s)	115, 238
AcvI	CACGTG	1 cut(s)	307
AfaI	GTAC	1 cut(s)	662
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	7 cut(s)	67, 85, 127, 394, 425, 555, 572
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	5 cut(s)	173, 229, 455, 504, 639
AluI	AGCT	5 cut(s)	173, 229, 455, 504, 639
Alw21I	GWGCWC	3 cut(s)	175, 347, 714
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	6 cut(s)	115, 238, 476, 586, 620, 689
ApeKI	GCWGC	1 cut(s)	226
AseI	ATTAAT	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	175
BbrPI	CACGTG	1 cut(s)	307
Bbv12I	GWGCWC	3 cut(s)	175, 347, 714
BbvI	GCAGC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	405
BfaI	CTAG	3 cut(s)	27, 177, 671
BfuAI	ACCTGC	1 cut(s)	735
BisI	GCNGC	4 cut(s)	118, 227, 238, 589
BlsI	GCNGC	4 cut(s)	119, 228, 239, 590
Bme1390I	CCNGG	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	174, 656
BpmI	CTGGAG	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	307
BsaBI	GATNNNNATC	2 cut(s)	12, 393
BsaJI	CCNNGG	2 cut(s)	564, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse8I	GATNNNNATC	2 cut(s)	12, 393
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	564, 642
BseJI	GATNNNNATC	2 cut(s)	12, 393
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	597
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	245
Bsh1236I	CGCG	2 cut(s)	120, 137
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	6 cut(s)	117, 240, 478, 588, 622, 691
BshNI	GGYRCC	1 cut(s)	560
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	3 cut(s)	175, 347, 714
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	6 cut(s)	117, 240, 478, 588, 622, 691
Bsp1286I	GDGCHC	3 cut(s)	175, 347, 714
Bsp143I	GATC	2 cut(s)	7, 289
BspACI	CCGC	5 cut(s)	104, 118, 184, 237, 589
BspANI	GGCC	6 cut(s)	117, 240, 478, 588, 622, 691
BspCNI	CTCAG	1 cut(s)	596
BspFNI	CGCG	2 cut(s)	120, 137
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	735
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	564, 642
BssMI	GATC	2 cut(s)	7, 289
BssT1I	CCWWGG	2 cut(s)	564, 642
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	4 cut(s)	71, 145, 337, 709
Bst6I	CTCTTC	4 cut(s)	39, 305, 335, 570
BstBAI	YACGTR	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	583
BstFNI	CGCG	2 cut(s)	120, 137
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	10, 292
BstMBI	GATC	2 cut(s)	7, 289
BstMCI	CGRYCG	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	2 cut(s)	120, 137
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	6 cut(s)	117, 240, 478, 588, 622, 691
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	3 cut(s)	228, 342, 345
BveI	ACCTGC	1 cut(s)	735
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	661
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	1 cut(s)	583
DpnI	GATC	2 cut(s)	9, 291
DpnII	GATC	2 cut(s)	7, 289
EaeI	YGGCCR	2 cut(s)	115, 238
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	4 cut(s)	39, 305, 335, 570
EarI	CTCTTC	4 cut(s)	39, 305, 335, 570
Ecl136II	GAGCTC	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	564, 642
Eco24I	GRGCYC	1 cut(s)	175
Eco52I	CGGCCG	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	173
Eco72I	CACGTG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	2 cut(s)	564, 642
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	564, 642
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FauI	CCCGC	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	118, 227, 238, 589
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	4 cut(s)	118, 227, 238, 589
FspBI	CTAG	3 cut(s)	27, 177, 671
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	4 cut(s)	118, 227, 238, 589
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	6 cut(s)	117, 240, 478, 588, 622, 691
HhaI	GCGC	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	3 cut(s)	313, 394, 581
HphI	GGTGA	1 cut(s)	8
Hpy166II	GTNNAC	3 cut(s)	189, 678, 705
Hpy188I	TCNGA	2 cut(s)	170, 655
Hpy188III	TCNNGA	3 cut(s)	127, 368, 671
Hpy8I	GTNNAC	3 cut(s)	189, 678, 705
Hpy99I	CGWCG	2 cut(s)	490, 655
HpyAV	CCTTC	5 cut(s)	365, 489, 561, 607, 681
HpyCH4III	ACNGT	4 cut(s)	71, 145, 337, 709
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	4 cut(s)	221, 226, 322, 730
HpyF3I	CTNAG	1 cut(s)	583
HpySE526I	ACGT	1 cut(s)	306
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	7, 289
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	2 cut(s)	178, 644
LpnPI	CCDG	6 cut(s)	54, 348, 390, 417, 429, 570
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	174, 656
MaeI	CTAG	3 cut(s)	27, 177, 671
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	71, 314
MalI	GATC	2 cut(s)	9, 291
MboI	GATC	2 cut(s)	7, 289
MboII	GAAGA	6 cut(s)	26, 322, 352, 474, 584, 587
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	3 cut(s)	175, 347, 714
MluCI	AATT	3 cut(s)	272, 437, 508
MlyI	GAGTC	2 cut(s)	322, 575
MmeI	TCCRAC	2 cut(s)	609, 633
MnlI	CCTC	8 cut(s)	42, 48, 56, 209, 461, 571, 612, 731
MseI	TTAA	3 cut(s)	462, 512, 666
MslI	CAYNNNNRTG	2 cut(s)	522, 597
MspR9I	CCNGG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	2 cut(s)	120, 137
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	2 cut(s)	7, 289
NlaIV	GGNNCC	1 cut(s)	562
NmuCI	GTSAC	1 cut(s)	314
PagI	TCATGA	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	335
PctI	GAATGC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	394
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	4 cut(s)	119, 228, 239, 590
PleI	GAGTC	2 cut(s)	321, 575
PmaCI	CACGTG	1 cut(s)	307
PmlI	CACGTG	1 cut(s)	307
PpsI	GAGTC	2 cut(s)	321, 575
Ppu21I	YACGTR	1 cut(s)	307
PshBI	ATTAAT	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	403
PspCI	CACGTG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	2 cut(s)	522, 597
SacI	GAGCTC	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	462, 512, 666
SatI	GCNGC	4 cut(s)	118, 227, 238, 589
Sau3AI	GATC	2 cut(s)	7, 289
SchI	GAGTC	2 cut(s)	322, 575
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	3 cut(s)	175, 347, 714
SfaNI	GCATC	2 cut(s)	174, 656
SmiMI	CAYNNNNRTG	2 cut(s)	522, 597
Sse9I	AATT	3 cut(s)	272, 437, 508
SsiI	CCGC	5 cut(s)	104, 118, 184, 237, 589
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	3 cut(s)	27, 177, 671
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	2 cut(s)	564, 642
TaaI	ACNGT	4 cut(s)	71, 145, 337, 709
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	485
TasI	AATT	3 cut(s)	272, 437, 508
TauI	GCSGC	3 cut(s)	120, 240, 591
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	3 cut(s)	462, 512, 666
Tru9I	TTAA	3 cut(s)	462, 512, 666
TscAI	CASTG	3 cut(s)	228, 342, 352
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	8 cut(s)	17, 206, 258, 293, 384, 462, 509, 626
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	3 cut(s)	228, 342, 352
VspI	ATTAAT	1 cut(s)	462
XbaI	TCTAGA	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	699
XspI	CTAG	3 cut(s)	27, 177, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.