Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Reverse (-)

2882401 .. 2886406

Gene Structure 4006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1039300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGCTCAAACCCTAGCATGATGAAAAATACTTCTTTACCCTTGCCTGATCTCTCTTTACAGATCAGCCCTCCATCATCTGCGGATGATCTTCCATACGATATTGGAGTAACGAGAAAAGCACTTTACAGTACAGACAGAAGCTCAGCCACCGACTCCGGCAGCAGCGGAAGCGATTTGAGTCAGGAAAATGGCTTCTACCACCTTGAAAGGAGTAGCAGTTACAATCTTGCTTCGGCGGATGAGGAGCCAAAGTTAAGTTTAGGGTTTGATGAAATGAAAGATCATCATCACCATATGGCTAGTCCTCTTCCTCCAGCCCTCCAAATGCCAGGAAACTTCAACAGTAACCATTACCTCAACCACCACCACCACCAACCGCAAATCTACGGCCGCGAGTTCAAGAGAAGCGCGAGAACAGTTGGTGGTGTGAAAAGAAGCATCAGAGCTCCTAGAATGCGGTGGACTACAACCCTCCATGCCCATTTCGTTCATGCAGTACAGCTTCTTGGTGGCCATGAAAGAGCAACGCCAAAATCTGTGTTAGAGTTGATGAATGTGAAGGATCTAACCCTTGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAATAAAGGAACAGGTCATGAAGGGCAAACGGACATGGATTTGAATCAAAATCCAGGAACTAATCCAGCACTTCAAATAAATGCACAATTATCTTGTGAGAAAGCTAATATTAATAGAGGTTCATGGCCTTCTTCGACGGAGATGAATGGAAGCTCTAATTTAAGACATGGACATGGTTTGGCATATACTCATTCCCCACCTTCAAATGGAACCAAGGTGGAAAAAGAGGACTCAGGCCACCATGTGTATGACCAAAGCATGAAGGAGAGGCCGATGTTGGATTGTGGCTCCTTGGCATCGTCGGATATGTACCTTAATCTAGAGTTCACTCTTGGAAGGCCAAGTGGCGAATGGACTGTGCTCAATAGCCTCAACCTTCAAATGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.4

Weight (kDa)

6.74

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	152 - 203	1.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	396, 413
AciI	CCGC	6 cut(s)	83, 168, 239, 380, 394, 460
AclWI	GGATC	1 cut(s)	573
AcoI	YGGCCR	2 cut(s)	391, 514
AcvI	CACGTG	1 cut(s)	583
AdeI	CACNNNGTG	1 cut(s)	871
AfaI	GTAC	3 cut(s)	133, 501, 938
AfiI	CCNNNNNNNGG	1 cut(s)	833
AgsI	TTSAA	7 cut(s)	209, 343, 403, 670, 701, 831, 1007
AjnI	CCWGG	2 cut(s)	331, 679
AluBI	AGCT	6 cut(s)	6, 144, 449, 505, 731, 780
AluI	AGCT	6 cut(s)	6, 144, 449, 505, 731, 780
Alw21I	GWGCWC	4 cut(s)	8, 451, 623, 990
AlwI	GGATC	1 cut(s)	573
AoxI	GGCC	6 cut(s)	391, 514, 752, 862, 896, 965
ApeKI	GCWGC	2 cut(s)	162, 165
AseI	ATTAAT	1 cut(s)	738
AspLEI	GCGC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	516
BanII	GRGCYC	2 cut(s)	8, 451
BbrPI	CACGTG	1 cut(s)	583
Bbv12I	GWGCWC	4 cut(s)	8, 451, 623, 990
BbvI	GCAGC	2 cut(s)	174, 177
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	2 cut(s)	333, 681
BfaI	CTAG	4 cut(s)	15, 303, 453, 947
BisI	GCNGC	3 cut(s)	163, 166, 394
BlpI	GCTNAGC	1 cut(s)	145
BlsI	GCNGC	3 cut(s)	164, 167, 395
Bme1390I	CCNGG	2 cut(s)	333, 681
BmiI	GGNNCC	3 cut(s)	249, 838, 916
BmrFI	CCNGG	2 cut(s)	333, 681
BmsI	GCATC	2 cut(s)	450, 932
BpmI	CTGGAG	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	583
BsaBI	GATNNNNATC	2 cut(s)	288, 669
BsaJI	CCNNGG	2 cut(s)	840, 918
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse8I	GATNNNNATC	2 cut(s)	288, 669
BseBI	CCWGG	2 cut(s)	333, 681
BseDI	CCNNGG	2 cut(s)	840, 918
BseGI	GGATG	2 cut(s)	91, 247
BseJI	GATNNNNATC	2 cut(s)	288, 669
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMII	CTCAG	2 cut(s)	159, 873
BseRI	GAGGAG	1 cut(s)	260
BseX3I	CGGCCG	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	174, 177
Bsh1236I	CGCG	2 cut(s)	396, 413
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	6 cut(s)	393, 516, 754, 864, 898, 967
BsiEI	CGRYCG	1 cut(s)	394
BsiHKAI	GWGCWC	4 cut(s)	8, 451, 623, 990
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	6 cut(s)	393, 516, 754, 864, 898, 967
Bsp1286I	GDGCHC	4 cut(s)	8, 451, 623, 990
Bsp143I	GATC	5 cut(s)	49, 63, 88, 283, 565
Bsp1720I	GCTNAGC	1 cut(s)	145
BspACI	CCGC	6 cut(s)	83, 168, 239, 380, 394, 460
BspANI	GGCC	6 cut(s)	393, 516, 754, 864, 898, 967
BspCNI	CTCAG	2 cut(s)	158, 872
BspFNI	CGCG	2 cut(s)	396, 413
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	3 cut(s)	249, 838, 916
BspPI	GGATC	1 cut(s)	573
BspQI	GCTCTTC	1 cut(s)	611
BssECI	CCNNGG	2 cut(s)	840, 918
BssMI	GATC	5 cut(s)	49, 63, 88, 283, 565
BssT1I	CCWWGG	2 cut(s)	840, 918
Bst2UI	CCWGG	2 cut(s)	333, 681
Bst4CI	ACNGT	5 cut(s)	131, 347, 421, 613, 985
Bst6I	CTCTTC	3 cut(s)	315, 581, 611
BstBAI	YACGTR	1 cut(s)	583
BstDEI	CTNAG	2 cut(s)	145, 859
BstF5I	GGATG	2 cut(s)	91, 247
BstFNI	CGCG	2 cut(s)	396, 413
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	5 cut(s)	52, 66, 91, 286, 568
BstMBI	GATC	5 cut(s)	49, 63, 88, 283, 565
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	2 cut(s)	333, 681
BstSCI	CCNGG	2 cut(s)	331, 679
BstUI	CGCG	2 cut(s)	396, 413
BstV1I	GCAGC	2 cut(s)	174, 177
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BstZI	CGGCCG	1 cut(s)	391
BsuRI	GGCC	6 cut(s)	393, 516, 754, 864, 898, 967
BtsCI	GGATG	2 cut(s)	91, 247
BtsIMutI	CAGTG	2 cut(s)	618, 621
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	1 cut(s)	413
Csp6I	GTAC	3 cut(s)	132, 500, 937
CviQI	GTAC	3 cut(s)	132, 500, 937
DdeI	CTNAG	2 cut(s)	145, 859
DpnI	GATC	5 cut(s)	51, 65, 90, 285, 567
DpnII	GATC	5 cut(s)	49, 63, 88, 283, 565
DraIII	CACNNNGTG	1 cut(s)	871
EaeI	YGGCCR	2 cut(s)	391, 514
EagI	CGGCCG	1 cut(s)	391
Eam1104I	CTCTTC	3 cut(s)	315, 581, 611
EarI	CTCTTC	3 cut(s)	315, 581, 611
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	2 cut(s)	6, 449
EclXI	CGGCCG	1 cut(s)	391
Eco130I	CCWWGG	2 cut(s)	840, 918
Eco24I	GRGCYC	2 cut(s)	8, 451
Eco52I	CGGCCG	1 cut(s)	391
Eco53kI	GAGCTC	2 cut(s)	6, 449
Eco72I	CACGTG	1 cut(s)	583
EcoICRI	GAGCTC	2 cut(s)	6, 449
EcoRII	CCWGG	2 cut(s)	331, 679
EcoT14I	CCWWGG	2 cut(s)	840, 918
EcoT38I	GRGCYC	2 cut(s)	8, 451
ErhI	CCWWGG	2 cut(s)	840, 918
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FauNDI	CATATG	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	163, 166, 394
FokI	GGATG	2 cut(s)	98, 254
FriOI	GRGCYC	2 cut(s)	8, 451
Fsp4HI	GCNGC	3 cut(s)	163, 166, 394
FspBI	CTAG	4 cut(s)	15, 303, 453, 947
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	3 cut(s)	163, 166, 394
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	6 cut(s)	393, 516, 754, 864, 898, 967
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	413
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HinfI	GANTC	5 cut(s)	155, 181, 589, 670, 857
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	465, 954
Hpy188I	TCNGA	2 cut(s)	446, 931
Hpy188III	TCNNGA	4 cut(s)	185, 403, 644, 947
Hpy8I	GTNNAC	2 cut(s)	465, 954
Hpy99I	CGWCG	2 cut(s)	766, 931
HpyAV	CCTTC	7 cut(s)	556, 641, 765, 837, 883, 957, 1013
HpyCH4III	ACNGT	5 cut(s)	131, 347, 421, 613, 985
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	3 cut(s)	497, 598, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	2 cut(s)	145, 859
HpySE526I	ACGT	1 cut(s)	582
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	5 cut(s)	49, 63, 88, 283, 565
LguI	GCTCTTC	1 cut(s)	611
LmnI	GCTCC	3 cut(s)	247, 454, 920
Lsp1109I	GCAGC	2 cut(s)	174, 177
LweI	GCATC	2 cut(s)	450, 932
MaeI	CTAG	4 cut(s)	15, 303, 453, 947
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	4 cut(s)	109, 221, 347, 590
MalI	GATC	5 cut(s)	51, 65, 90, 285, 567
MboI	GATC	5 cut(s)	49, 63, 88, 283, 565
MboII	GAAGA	5 cut(s)	83, 302, 598, 628, 750
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	4 cut(s)	8, 451, 623, 990
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	2 cut(s)	713, 784
MluNI	TGGCCA	1 cut(s)	516
MlyI	GAGTC	4 cut(s)	149, 190, 598, 851
MmeI	TCCRAC	2 cut(s)	885, 909
Mox20I	TGGCCA	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	4 cut(s)	257, 738, 788, 942
MslI	CAYNNNNRTG	2 cut(s)	798, 873
Msp20I	TGGCCA	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	333, 681
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	2 cut(s)	333, 681
MvnI	CGCG	2 cut(s)	396, 413
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeI	CATATG	1 cut(s)	297
NdeII	GATC	5 cut(s)	49, 63, 88, 283, 565
NlaIV	GGNNCC	3 cut(s)	249, 838, 916
NmuCI	GTSAC	1 cut(s)	590
PagI	TCATGA	1 cut(s)	643
PciSI	GCTCTTC	1 cut(s)	611
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	670
PfoI	TCCNGGA	1 cut(s)	679
PkrI	GCNGC	3 cut(s)	164, 167, 395
PleI	GAGTC	4 cut(s)	149, 189, 597, 851
PmaCI	CACGTG	1 cut(s)	583
PmlI	CACGTG	1 cut(s)	583
PpsI	GAGTC	4 cut(s)	149, 189, 597, 851
Ppu21I	YACGTR	1 cut(s)	583
PshBI	ATTAAT	1 cut(s)	738
Psp124BI	GAGCTC	2 cut(s)	8, 451
Psp6I	CCWGG	2 cut(s)	331, 679
PspCI	CACGTG	1 cut(s)	583
PspGI	CCWGG	2 cut(s)	331, 679
PspN4I	GGNNCC	3 cut(s)	249, 838, 916
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	3 cut(s)	133, 501, 938
RsaNI	GTAC	3 cut(s)	132, 500, 937
RseI	CAYNNNNRTG	2 cut(s)	798, 873
SacI	GAGCTC	2 cut(s)	8, 451
SapI	GCTCTTC	1 cut(s)	611
SaqAI	TTAA	4 cut(s)	257, 738, 788, 942
SatI	GCNGC	3 cut(s)	163, 166, 394
Sau3AI	GATC	5 cut(s)	49, 63, 88, 283, 565
SchI	GAGTC	4 cut(s)	149, 190, 598, 851
ScrFI	CCNGG	2 cut(s)	333, 681
SduI	GDGCHC	4 cut(s)	8, 451, 623, 990
SfaNI	GCATC	2 cut(s)	450, 932
SmiMI	CAYNNNNRTG	2 cut(s)	798, 873
Sse9I	AATT	2 cut(s)	713, 784
SsiI	CCGC	6 cut(s)	83, 168, 239, 380, 394, 460
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	4 cut(s)	15, 303, 453, 947
SstI	GAGCTC	2 cut(s)	8, 451
StyD4I	CCNGG	2 cut(s)	331, 679
StyI	CCWWGG	2 cut(s)	840, 918
TaaI	ACNGT	5 cut(s)	131, 347, 421, 613, 985
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	1 cut(s)	761
TasI	AATT	2 cut(s)	713, 784
TatI	WGTACW	2 cut(s)	131, 499
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	4 cut(s)	257, 738, 788, 942
Tru9I	TTAA	4 cut(s)	257, 738, 788, 942
TscAI	CASTG	2 cut(s)	618, 628
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	2 cut(s)	162, 165
Tsp45I	GTSAC	1 cut(s)	590
TspGWI	ACGGA	2 cut(s)	671, 779
TspRI	CASTG	2 cut(s)	618, 628
VspI	ATTAAT	1 cut(s)	738
XbaI	TCTAGA	1 cut(s)	946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	975
XspI	CTAG	4 cut(s)	15, 303, 453, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.