FvH4_2g40620
MYB Family

transcription factor KAN4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012190
Physical Location & Seq
Reverse (-)
28917626 .. 28921350
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40620.t1

Sequence Viewer

Length: 1005 bp
ATGATGTACCTGAGCTCAAACTCAAACCCTATAATGAGAAGTACTTCTTCACCCTTGCCTGATCTCTCTTTACAGATCAGCCCACCGTCAGATCACTACGAGATTGCTTTATCAAGAAAAGCACTTAACGGTGATCGGAGCTCAACCACCGACTCCGCTAGCAGTGGGAGTGATTTGAGTCATGAAAATGTTCTCTACCACTTAGATCAGAGGACTAGTTATAATCCCGCTGCCGCTGAGCCCGGGCCAAATTTGAGTTTAGGTCTTGAAATGAAGGATATAATTAGTAACAGTACTAGTTCAACACCTCTACCGCCCAGAAACTTCAATCACCATCATCATCACCATCCTCAAATCTACGGTCGAGAGTTCAAAAGAAGCGCCAGAACTGTCGGGAATGTGAAAAGAAGCGTCAGAGCTCCGAGGATGCGGTGGACTACAACACTTCATGCCCATTTCGTACATGCAGTTCAGCTTCTCGGTGGCCATGAAAGAGCAACGCCAAAATCGGTGTTAGAGTTGATGAATGTGAAGGATCTAACTCTCGCTCACGTGAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACCACAAAGGAACAGGTCATGAAGGACAGCTGATGGATATGGGTTTGGACCAAAATCCAGGAAATAATAATGTTCAAGTAAATGGATCAGCACTACCCTGTGATTCTGAGAAGGCTATTGATTCACCTTCAACTCTGCTTCTGCAAAATCCCAGCATCAGAGGATCATGGCATTCTACAAGGAAGACAAATGGCAGCTGCAAACCAAGTCCTGGAGATTTTTTGACATGTTCTGATTCCCCATCCTCAATTGGTACCAAGGTGGATGAAGAGGATTCGGGTTCAGGCCGCCAGTTGGATTGTAGCTCCTTGTCATCTTCGGATCATATGTATCTTAACCTAGAGTTCACGCTTGGAAGGCCAAGTGGCGAATGGTCTATGCTCAACACCCTCAACCTTCAAATGACTTGA

Protein Analysis

335

Amino Acids

36.64

Weight (kDa)

7.04

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 142 - 193 1.3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42630 AT5G42630
fragaria_vesca FvH4_2g40620
malus_domestica MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica Prupe.1G387800_v2.0.a1
pyrus_communis pycom08g03140 pycom15g03130
rosa_chinensis RchiOBHm_Chr6g0300071
rosa_laevigata RLG00000011369
rosa_multiflora Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii Rroxscaffold_7G00168130
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana Rw6G035490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
Acc65I GGTACC 1 cut(s) 848
AccB1I GGYRCC 1 cut(s) 848
AccB7I CCANNNNNTGG 1 cut(s) 806
AciI CCGC 6 cut(s) 156, 228, 234, 314, 430, 883
AclWI GGATC 4 cut(s) 543, 688, 766, 924
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 1 cut(s) 250
AcvI CACGTG 1 cut(s) 553
AfaI GTAC 5 cut(s) 8, 43, 295, 462, 850
AfiI CCNNNNNNNGG 2 cut(s) 806, 889
AflIII ACRYGT 1 cut(s) 821
AgsI TTSAA 7 cut(s) 269, 303, 328, 373, 671, 726, 995
AhlI ACTAGT 2 cut(s) 215, 296
AjnI CCWGG 2 cut(s) 652, 805
AluBI AGCT 7 cut(s) 15, 141, 419, 475, 625, 792, 900
AluI AGCT 7 cut(s) 15, 141, 419, 475, 625, 792, 900
Alw21I GWGCWC 4 cut(s) 17, 143, 421, 593
AlwI GGATC 4 cut(s) 543, 688, 766, 924
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 4 cut(s) 245, 484, 880, 953
ApeKI GCWGC 3 cut(s) 230, 789, 792
ApoI RAATTY 1 cut(s) 250
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
Asp700I GAANNNNTTC 2 cut(s) 43, 189
Asp718I GGTACC 1 cut(s) 848
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 2 cut(s) 245, 643
AsuC2I CCSGG 2 cut(s) 243, 244
AsuHPI GGTGA 5 cut(s) 42, 143, 323, 335, 711
AsuNHI GCTAGC 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 643
BaeI ACNNNNGTAYC 2 cut(s) 840, 873
BalI TGGCCA 1 cut(s) 486
BanI GGYRCC 1 cut(s) 848
BanII GRGCYC 4 cut(s) 17, 143, 243, 421
BbrPI CACGTG 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 785
Bbv12I GWGCWC 4 cut(s) 17, 143, 421, 593
BbvI GCAGC 3 cut(s) 217, 779, 801
BccI CCATC 4 cut(s) 342, 354, 622, 844
BciT130I CCWGG 2 cut(s) 654, 807
BcnI CCSGG 2 cut(s) 243, 244
BcuI ACTAGT 2 cut(s) 215, 296
BfaI CTAG 4 cut(s) 159, 216, 297, 935
BfoI RGCGCY 1 cut(s) 384
BisI GCNGC 5 cut(s) 231, 234, 790, 793, 883
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 5 cut(s) 232, 235, 791, 794, 884
BmcAI AGTACT 2 cut(s) 43, 295
Bme1390I CCNGG 4 cut(s) 243, 244, 654, 807
Bme18I GGWCC 1 cut(s) 643
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 245, 643
BmiI GGNNCC 1 cut(s) 850
BmrFI CCNGG 4 cut(s) 243, 244, 654, 807
BmsI GCATC 2 cut(s) 417, 759
BmtI GCTAGC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 785
BpmI CTGGAG 1 cut(s) 828
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 243, 244
BsaAI YACGTR 1 cut(s) 553
BsaJI CCNNGG 3 cut(s) 242, 422, 852
Bsc4I CCNNNNNNNGG 2 cut(s) 806, 889
Bse1I ACTGG 1 cut(s) 886
BseBI CCWGG 2 cut(s) 654, 807
BseDI CCNNGG 3 cut(s) 242, 422, 852
BseGI GGATG 4 cut(s) 346, 432, 836, 865
BseLI CCNNNNNNNGG 2 cut(s) 806, 889
BseMII CTCAG 2 cut(s) 228, 693
BseNI ACTGG 1 cut(s) 886
BseXI GCAGC 3 cut(s) 217, 779, 801
BseYI CCCAGC 1 cut(s) 746
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 4 cut(s) 247, 486, 882, 955
BshNI GGYRCC 1 cut(s) 848
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 4 cut(s) 17, 143, 421, 593
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 806, 889
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 4 cut(s) 247, 486, 882, 955
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 5 cut(s) 17, 143, 243, 421, 593
Bsp143I GATC 9 cut(s) 61, 75, 91, 133, 205, 535, 680, 758, 916
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 6 cut(s) 156, 228, 234, 314, 430, 883
BspANI GGCC 4 cut(s) 247, 486, 882, 955
BspCNI CTCAG 2 cut(s) 229, 694
BspHI TCATGA 2 cut(s) 181, 613
BspLI GGNNCC 1 cut(s) 850
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 4 cut(s) 543, 688, 766, 924
BspQI GCTCTTC 1 cut(s) 581
BspT107I GGYRCC 1 cut(s) 848
BsrI ACTGG 1 cut(s) 886
BssECI CCNNGG 3 cut(s) 242, 422, 852
BssMI GATC 9 cut(s) 61, 75, 91, 133, 205, 535, 680, 758, 916
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 2 cut(s) 654, 807
Bst4CI ACNGT 6 cut(s) 87, 131, 293, 362, 391, 583
Bst6I CTCTTC 3 cut(s) 551, 581, 858
BstBAI YACGTR 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 4 cut(s) 11, 202, 237, 702
BstF5I GGATG 4 cut(s) 346, 432, 836, 865
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 9 cut(s) 64, 78, 94, 136, 208, 538, 683, 761, 919
BstMBI GATC 9 cut(s) 61, 75, 91, 133, 205, 535, 680, 758, 916
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 952
BstNI CCWGG 2 cut(s) 654, 807
BstNSI RCATGY 2 cut(s) 467, 825
BstSCI CCNGG 4 cut(s) 241, 242, 652, 805
BstV1I GCAGC 3 cut(s) 217, 779, 801
BstV2I GAAGAC 1 cut(s) 785
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BsuRI GGCC 4 cut(s) 247, 486, 882, 955
BtsCI GGATG 4 cut(s) 346, 432, 836, 865
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 3 cut(s) 169, 588, 591
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 2 cut(s) 181, 613
CfoI GCGC 1 cut(s) 383
Cfr13I GGNCC 2 cut(s) 245, 643
Cfr9I CCCGGG 1 cut(s) 242
CseI GACGC 1 cut(s) 400
Csp6I GTAC 5 cut(s) 7, 42, 294, 461, 849
CviAII CATG 7 cut(s) 182, 449, 464, 488, 614, 762, 822
CviQI GTAC 5 cut(s) 7, 42, 294, 461, 849
DdeI CTNAG 4 cut(s) 11, 202, 237, 702
DpnI GATC 9 cut(s) 63, 77, 93, 135, 207, 537, 682, 760, 918
DpnII GATC 9 cut(s) 61, 75, 91, 133, 205, 535, 680, 758, 916
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 3 cut(s) 551, 581, 858
EarI CTCTTC 3 cut(s) 551, 581, 858
Ecl136II GAGCTC 3 cut(s) 15, 141, 419
Eco130I CCWWGG 1 cut(s) 852
Eco24I GRGCYC 4 cut(s) 17, 143, 243, 421
Eco47I GGWCC 1 cut(s) 643
Eco53kI GAGCTC 3 cut(s) 15, 141, 419
Eco72I CACGTG 1 cut(s) 553
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 3 cut(s) 15, 141, 419
EcoRII CCWGG 2 cut(s) 652, 805
EcoT14I CCWWGG 1 cut(s) 852
EcoT38I GRGCYC 4 cut(s) 17, 143, 243, 421
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 7 cut(s) 185, 452, 467, 491, 617, 765, 825
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FatI CATG 7 cut(s) 181, 448, 463, 487, 613, 761, 821
FauI CCCGC 1 cut(s) 235
FauNDI CATATG 1 cut(s) 921
Fnu4HI GCNGC 5 cut(s) 231, 234, 790, 793, 883
FokI GGATG 4 cut(s) 333, 439, 823, 872
FriOI GRGCYC 4 cut(s) 17, 143, 243, 421
Fsp4HI GCNGC 5 cut(s) 231, 234, 790, 793, 883
FspBI CTAG 4 cut(s) 159, 216, 297, 935
GlaI GCGC 1 cut(s) 382
GluI GCNGC 5 cut(s) 231, 234, 790, 793, 883
GsaI CCCAGC 1 cut(s) 750
GsuI CTGGAG 1 cut(s) 828
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 4 cut(s) 247, 486, 882, 955
HapII CCGG 1 cut(s) 243
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 383
Hin1II CATG 7 cut(s) 185, 452, 467, 491, 617, 765, 825
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HinfI GANTC 7 cut(s) 152, 178, 559, 698, 716, 830, 869
HpaII CCGG 1 cut(s) 243
HphI GGTGA 5 cut(s) 42, 143, 323, 335, 711
Hpy166II GTNNAC 2 cut(s) 435, 942
Hpy188I TCNGA 9 cut(s) 91, 138, 210, 416, 423, 703, 755, 829, 916
Hpy188III TCNNGA 6 cut(s) 114, 182, 266, 365, 394, 614
Hpy8I GTNNAC 2 cut(s) 435, 942
HpyAV CCTTC 7 cut(s) 268, 526, 611, 700, 732, 945, 1001
HpyCH4III ACNGT 6 cut(s) 87, 131, 293, 362, 391, 583
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 4 cut(s) 467, 568, 739, 795
HpyF10VI GCNNNNNNNGC 1 cut(s) 952
HpyF3I CTNAG 4 cut(s) 11, 202, 237, 702
HpySE526I ACGT 1 cut(s) 552
Hsp92II CATG 7 cut(s) 185, 452, 467, 491, 617, 765, 825
HspAI GCGC 1 cut(s) 381
KpnI GGTACC 1 cut(s) 852
Kzo9I GATC 9 cut(s) 61, 75, 91, 133, 205, 535, 680, 758, 916
LguI GCTCTTC 1 cut(s) 581
LmnI GCTCC 3 cut(s) 138, 424, 905
Lsp1109I GCAGC 3 cut(s) 217, 779, 801
LweI GCATC 2 cut(s) 417, 759
MaeI CTAG 4 cut(s) 159, 216, 297, 935
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 287
MalI GATC 9 cut(s) 63, 77, 93, 135, 207, 537, 682, 760, 918
MboI GATC 9 cut(s) 61, 75, 91, 133, 205, 535, 680, 758, 916
MboII GAAGA 6 cut(s) 39, 568, 598, 790, 875, 903
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 5 cut(s) 17, 143, 243, 421, 593
MlsI TGGCCA 1 cut(s) 486
MluCI AATT 3 cut(s) 250, 282, 843
MluNI TGGCCA 1 cut(s) 486
MlyI GAGTC 3 cut(s) 146, 187, 568
MmeI TCCRAC 1 cut(s) 870
MnlI CCTC 8 cut(s) 204, 318, 360, 417, 749, 850, 859, 995
Mox20I TGGCCA 1 cut(s) 486
MroXI GAANNNNTTC 2 cut(s) 43, 189
MscI TGGCCA 1 cut(s) 486
MseI TTAA 2 cut(s) 126, 930
MslI CAYNNNNRTG 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 486
MspA1I CMGCKG 4 cut(s) 230, 236, 625, 792
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 4 cut(s) 243, 244, 654, 807
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 2 cut(s) 654, 807
MwoI GCNNNNNNNGC 1 cut(s) 952
NciI CCSGG 2 cut(s) 243, 244
NdeI CATATG 1 cut(s) 921
NdeII GATC 9 cut(s) 61, 75, 91, 133, 205, 535, 680, 758, 916
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 7 cut(s) 185, 452, 467, 491, 617, 765, 825
NlaIV GGNNCC 1 cut(s) 850
NspI RCATGY 2 cut(s) 467, 825
PagI TCATGA 2 cut(s) 181, 613
PciI ACATGT 1 cut(s) 821
PciSI GCTCTTC 1 cut(s) 581
PctI GAATGC 1 cut(s) 766
PdmI GAANNNNTTC 2 cut(s) 43, 189
PfeI GAWTC 4 cut(s) 698, 716, 830, 869
PflMI CCANNNNNTGG 1 cut(s) 806
PfoI TCCNGGA 2 cut(s) 652, 805
PkrI GCNGC 5 cut(s) 232, 235, 791, 794, 884
PleI GAGTC 3 cut(s) 146, 186, 567
PmaCI CACGTG 1 cut(s) 553
PmlI CACGTG 1 cut(s) 553
PpsI GAGTC 3 cut(s) 146, 186, 567
Ppu21I YACGTR 1 cut(s) 553
PscI ACATGT 1 cut(s) 821
PsiI TTATAA 1 cut(s) 222
Psp124BI GAGCTC 3 cut(s) 17, 143, 421
Psp6I CCWGG 2 cut(s) 652, 805
PspCI CACGTG 1 cut(s) 553
PspFI CCCAGC 1 cut(s) 746
PspGI CCWGG 2 cut(s) 652, 805
PspN4I GGNNCC 1 cut(s) 850
PspPI GGNCC 2 cut(s) 245, 643
PsrI GAACNNNNNNTAC 2 cut(s) 453, 485
PsuI RGATCY 1 cut(s) 535
PvuII CAGCTG 2 cut(s) 625, 792
RsaI GTAC 5 cut(s) 8, 43, 295, 462, 850
RsaNI GTAC 5 cut(s) 7, 42, 294, 461, 849
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 3 cut(s) 17, 143, 421
SapI GCTCTTC 1 cut(s) 581
SaqAI TTAA 2 cut(s) 126, 930
SatI GCNGC 5 cut(s) 231, 234, 790, 793, 883
Sau3AI GATC 9 cut(s) 61, 75, 91, 133, 205, 535, 680, 758, 916
Sau96I GGNCC 2 cut(s) 245, 643
ScaI AGTACT 2 cut(s) 43, 295
SchI GAGTC 3 cut(s) 146, 187, 568
ScrFI CCNGG 4 cut(s) 243, 244, 654, 807
SduI GDGCHC 5 cut(s) 17, 143, 243, 421, 593
SfaNI GCATC 2 cut(s) 417, 759
SinI GGWCC 1 cut(s) 643
SmaI CCCGGG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 186
SpeI ACTAGT 2 cut(s) 215, 296
SrfI GCCCGGGC 1 cut(s) 244
Sse9I AATT 3 cut(s) 250, 282, 843
SsiI CCGC 6 cut(s) 156, 228, 234, 314, 430, 883
SspMI CTAG 4 cut(s) 159, 216, 297, 935
SstI GAGCTC 3 cut(s) 17, 143, 421
StyD4I CCNGG 4 cut(s) 241, 242, 652, 805
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 6 cut(s) 87, 131, 293, 362, 391, 583
TaiI ACGT 1 cut(s) 555
TaqI TCGA 1 cut(s) 364
TasI AATT 3 cut(s) 250, 282, 843
TatI WGTACW 2 cut(s) 41, 293
TauI GCSGC 2 cut(s) 236, 885
TfiI GAWTC 4 cut(s) 698, 716, 830, 869
Tru1I TTAA 2 cut(s) 126, 930
Tru9I TTAA 2 cut(s) 126, 930
TscAI CASTG 3 cut(s) 169, 588, 598
TseI GCWGC 3 cut(s) 230, 789, 792
TspDTI ATGAA 7 cut(s) 198, 287, 437, 504, 539, 630, 876
TspMI CCCGGG 1 cut(s) 242
TspRI CASTG 3 cut(s) 169, 588, 598
Van91I CCANNNNNTGG 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 643
XapI RAATTY 1 cut(s) 250
XceI RCATGY 2 cut(s) 467, 825
XcmI CCANNNNNNNNNTGG 1 cut(s) 963
XmaI CCCGGG 1 cut(s) 242
XmnI GAANNNNTTC 2 cut(s) 43, 189
XspI CTAG 4 cut(s) 159, 216, 297, 935
ZrmI AGTACT 2 cut(s) 43, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.