Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Reverse (-)

8924250 .. 8926904

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGAACTACTTCTTCACCCTTGCCTGATCTCTCTTTACAGATCAGCCCACCGTCAGATCACAACGAGATGGGTTTAGCAAGAAAAGCACTTAACGGTGATAGGAGCTCAACCACCGACTCCACTAGCAGTGGGAGTGATTTGAGTCATGAAAATGTTCTCTACCACTTGGATCAGAGGGCTAGTTATAATCTCACTTCCGCTGAGCCCGAGCCAAATTTGAGTTTAGGTCTTGAAATGAAGGATATCATGAGTAGTAGTACTAGTTCAACACCTCTACTGCCAAGAAACTTCAATCATCATCATCATCATCCTCAAATCTACGGCCGAGATTTCAAAAGAAGCGCCAGAACTGTCGGGAATGTGAAAAGAAGCGTCAGAGCTCCGAGGATGCGGTGGACTACAACCCTTCATGCCCATTTCGTTCATGCAGTCCAGCTTCTCGGCGGCCATGAAAGAGCAACGCCAAAATCGGTGTTAGAGTTGATGAATGTGAAGGATCTAACTCTTGCACACGTGAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACCACAAAGGAACAGGAAACGAAGGGCAGCAAATAGATATGGGTTTGGACCAAAATCCAGGGAATAATAATGCTCAAGTAAATGGATCAGTACTACCTTGTGAGTCTGAGAAAGCTGTTAATTCACCTCCAACACTGCTTCTGCAAAATCCCAGCAGAGGATCATGGCATTCTAAAAGGGAGACAAATGGCAGCTGCAAACTAAGTCATGGAAATTCTTTGACGTATTCTCATTCCCCATCCTCAAATGGCACCAAGGTGGAGGAGGAGGATTCGGGTTCAGGCCGCCAGTTGGATTGTAGCTCCTTGTCATCTTCGGATCATATGTATCTTAACCTAGAGTTCACCCTTGGAAGGCCAAGTGGCGAATGGTCTATGCTCAACGCCCTCAACCTTCAAATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

322

Amino Acids

35.31

Weight (kDa)

7.35

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	130 - 181	1.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	809
AciI	CCGC	4 cut(s)	201, 394, 447, 844
AclWI	GGATC	5 cut(s)	180, 507, 652, 727, 885
AcoI	YGGCCR	2 cut(s)	325, 448
AcsI	RAATTY	2 cut(s)	217, 772
AcvI	CACGTG	1 cut(s)	517
AfaI	GTAC	2 cut(s)	262, 651
AfiI	CCNNNNNNNGG	3 cut(s)	716, 850, 912
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	5 cut(s)	236, 270, 295, 337, 956
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	616
AleI	CACNNNNGTG	1 cut(s)	815
AluBI	AGCT	6 cut(s)	108, 383, 439, 674, 753, 861
AluI	AGCT	6 cut(s)	108, 383, 439, 674, 753, 861
Alw21I	GWGCWC	3 cut(s)	110, 385, 557
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	5 cut(s)	180, 507, 652, 727, 885
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	4 cut(s)	325, 448, 841, 914
ApeKI	GCWGC	3 cut(s)	586, 750, 753
ApoI	RAATTY	2 cut(s)	217, 772
Asp700I	GAANNNNTTC	2 cut(s)	10, 156
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	4 cut(s)	9, 110, 675, 895
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	809
BanII	GRGCYC	3 cut(s)	110, 210, 385
BbrPI	CACGTG	1 cut(s)	517
Bbv12I	GWGCWC	3 cut(s)	110, 385, 557
BbvI	GCAGC	3 cut(s)	598, 740, 762
BccI	CCATC	2 cut(s)	64, 805
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	618
BcoDI	GTCTC	1 cut(s)	734
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	4 cut(s)	126, 183, 264, 896
BfoI	RGCGCY	1 cut(s)	348
BisI	GCNGC	5 cut(s)	448, 587, 751, 754, 844
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	449, 588, 752, 755, 845
BmcAI	AGTACT	2 cut(s)	262, 651
Bme1390I	CCNGG	1 cut(s)	618
Bme18I	GGWCC	1 cut(s)	607
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	1 cut(s)	811
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	618
BsaAI	YACGTR	1 cut(s)	517
BsaJI	CCNNGG	4 cut(s)	386, 617, 813, 907
Bsc4I	CCNNNNNNNGG	3 cut(s)	716, 850, 912
Bse1I	ACTGG	1 cut(s)	847
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	4 cut(s)	386, 617, 813, 907
BseGI	GGATG	3 cut(s)	310, 396, 797
BseLI	CCNNNNNNNGG	3 cut(s)	716, 850, 912
BseMII	CTCAG	2 cut(s)	195, 657
BseNI	ACTGG	1 cut(s)	847
BseRI	GAGGAG	2 cut(s)	836, 839
BseX3I	CGGCCG	1 cut(s)	325
BseXI	GCAGC	3 cut(s)	598, 740, 762
BseYI	CCCAGC	1 cut(s)	710
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	4 cut(s)	327, 450, 843, 916
BshNI	GGYRCC	1 cut(s)	809
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	3 cut(s)	110, 385, 557
BsiHKCI	CYCGRG	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	716, 850, 912
BsmAI	GTCTC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	4 cut(s)	327, 450, 843, 916
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	4 cut(s)	110, 210, 385, 557
Bsp143I	GATC	8 cut(s)	28, 42, 58, 172, 499, 644, 719, 877
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	4 cut(s)	201, 394, 447, 844
BspANI	GGCC	4 cut(s)	327, 450, 843, 916
BspCNI	CTCAG	2 cut(s)	196, 658
BspHI	TCATGA	2 cut(s)	148, 249
BspLI	GGNNCC	1 cut(s)	811
BspPI	GGATC	5 cut(s)	180, 507, 652, 727, 885
BspQI	GCTCTTC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	809
BsrI	ACTGG	1 cut(s)	847
BssECI	CCNNGG	4 cut(s)	386, 617, 813, 907
BssMI	GATC	8 cut(s)	28, 42, 58, 172, 499, 644, 719, 877
BssT1I	CCWWGG	2 cut(s)	813, 907
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	4 cut(s)	54, 98, 355, 547
Bst6I	CTCTTC	2 cut(s)	515, 545
BstBAI	YACGTR	1 cut(s)	517
BstDEI	CTNAG	3 cut(s)	204, 666, 761
BstF5I	GGATG	3 cut(s)	310, 396, 797
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	8 cut(s)	31, 45, 61, 175, 502, 647, 722, 880
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	8 cut(s)	28, 42, 58, 172, 499, 644, 719, 877
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	616
BstV1I	GCAGC	3 cut(s)	598, 740, 762
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BstZI	CGGCCG	1 cut(s)	325
BsuRI	GGCC	4 cut(s)	327, 450, 843, 916
BtsCI	GGATG	3 cut(s)	310, 396, 797
BtsI	GCAGTG	2 cut(s)	136, 692
BtsIMutI	CAGTG	4 cut(s)	136, 552, 555, 692
CciI	TCATGA	2 cut(s)	148, 249
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	607
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	261, 650
CviAII	CATG	7 cut(s)	149, 250, 413, 428, 452, 723, 767
CviQI	GTAC	2 cut(s)	261, 650
DdeI	CTNAG	3 cut(s)	204, 666, 761
DpnI	GATC	8 cut(s)	30, 44, 60, 174, 501, 646, 721, 879
DpnII	GATC	8 cut(s)	28, 42, 58, 172, 499, 644, 719, 877
EaeI	YGGCCR	2 cut(s)	325, 448
EagI	CGGCCG	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	515, 545
EarI	CTCTTC	2 cut(s)	515, 545
Ecl136II	GAGCTC	2 cut(s)	108, 383
EclXI	CGGCCG	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	813, 907
Eco24I	GRGCYC	3 cut(s)	110, 210, 385
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	607
Eco52I	CGGCCG	1 cut(s)	325
Eco53kI	GAGCTC	2 cut(s)	108, 383
Eco72I	CACGTG	1 cut(s)	517
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	2 cut(s)	108, 383
EcoRII	CCWGG	1 cut(s)	616
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	813, 907
EcoT38I	GRGCYC	3 cut(s)	110, 210, 385
ErhI	CCWWGG	2 cut(s)	813, 907
FaeI	CATG	7 cut(s)	152, 253, 416, 431, 455, 726, 770
FatI	CATG	7 cut(s)	148, 249, 412, 427, 451, 722, 766
FauNDI	CATATG	1 cut(s)	882
Fnu4HI	GCNGC	5 cut(s)	448, 587, 751, 754, 844
FokI	GGATG	3 cut(s)	297, 403, 784
FriOI	GRGCYC	3 cut(s)	110, 210, 385
Fsp4HI	GCNGC	5 cut(s)	448, 587, 751, 754, 844
FspBI	CTAG	4 cut(s)	126, 183, 264, 896
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	5 cut(s)	448, 587, 751, 754, 844
GsaI	CCCAGC	1 cut(s)	714
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	4 cut(s)	327, 450, 843, 916
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	7 cut(s)	152, 253, 416, 431, 455, 726, 770
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	5 cut(s)	119, 145, 523, 662, 830
HphI	GGTGA	4 cut(s)	9, 110, 675, 895
Hpy166II	GTNNAC	2 cut(s)	399, 903
Hpy188I	TCNGA	6 cut(s)	58, 177, 380, 387, 667, 877
Hpy188III	TCNNGA	4 cut(s)	149, 233, 250, 358
Hpy8I	GTNNAC	2 cut(s)	399, 903
HpyAV	CCTTC	6 cut(s)	235, 419, 490, 575, 906, 962
HpyCH4III	ACNGT	4 cut(s)	54, 98, 355, 547
HpyCH4IV	ACGT	2 cut(s)	516, 782
HpyCH4V	TGCA	5 cut(s)	431, 512, 532, 703, 756
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	3 cut(s)	204, 666, 761
HpySE526I	ACGT	2 cut(s)	516, 782
Hsp92II	CATG	7 cut(s)	152, 253, 416, 431, 455, 726, 770
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	8 cut(s)	28, 42, 58, 172, 499, 644, 719, 877
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	3 cut(s)	105, 388, 866
LpnPI	CCDG	9 cut(s)	39, 361, 449, 558, 603, 630, 724, 825, 860
Lsp1109I	GCAGC	3 cut(s)	598, 740, 762
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	4 cut(s)	126, 183, 264, 896
MaeII	ACGT	2 cut(s)	516, 782
MalI	GATC	8 cut(s)	30, 44, 60, 174, 501, 646, 721, 879
MboI	GATC	8 cut(s)	28, 42, 58, 172, 499, 644, 719, 877
MboII	GAAGA	4 cut(s)	6, 532, 562, 864
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	4 cut(s)	110, 210, 385, 557
MluCI	AATT	3 cut(s)	217, 679, 772
MlyI	GAGTC	4 cut(s)	113, 154, 532, 671
MmeI	TCCRAC	2 cut(s)	713, 831
MroXI	GAANNNNTTC	2 cut(s)	10, 156
MseI	TTAA	3 cut(s)	93, 678, 891
MslI	CAYNNNNRTG	2 cut(s)	153, 815
MspA1I	CMGCKG	2 cut(s)	203, 753
MspR9I	CCNGG	1 cut(s)	618
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeI	CATATG	1 cut(s)	882
NdeII	GATC	8 cut(s)	28, 42, 58, 172, 499, 644, 719, 877
NlaIII	CATG	7 cut(s)	152, 253, 416, 431, 455, 726, 770
NlaIV	GGNNCC	1 cut(s)	811
NmeAIII	GCCGAG	2 cut(s)	353, 423
OliI	CACNNNNGTG	1 cut(s)	815
PagI	TCATGA	2 cut(s)	148, 249
PciSI	GCTCTTC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	727
PdmI	GAANNNNTTC	2 cut(s)	10, 156
PfeI	GAWTC	1 cut(s)	830
PkrI	GCNGC	5 cut(s)	449, 588, 752, 755, 845
PleI	GAGTC	4 cut(s)	113, 153, 531, 670
PmaCI	CACGTG	1 cut(s)	517
PmlI	CACGTG	1 cut(s)	517
PpsI	GAGTC	4 cut(s)	113, 153, 531, 670
Ppu21I	YACGTR	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	189
Psp124BI	GAGCTC	2 cut(s)	110, 385
Psp6I	CCWGG	1 cut(s)	616
PspCI	CACGTG	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	811
PspPI	GGNCC	1 cut(s)	607
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PsuI	RGATCY	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	753
RsaI	GTAC	2 cut(s)	262, 651
RsaNI	GTAC	2 cut(s)	261, 650
RseI	CAYNNNNRTG	2 cut(s)	153, 815
SacI	GAGCTC	2 cut(s)	110, 385
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	3 cut(s)	93, 678, 891
SatI	GCNGC	5 cut(s)	448, 587, 751, 754, 844
Sau3AI	GATC	8 cut(s)	28, 42, 58, 172, 499, 644, 719, 877
Sau96I	GGNCC	1 cut(s)	607
ScaI	AGTACT	2 cut(s)	262, 651
SchI	GAGTC	4 cut(s)	113, 154, 532, 671
ScrFI	CCNGG	1 cut(s)	618
SduI	GDGCHC	4 cut(s)	110, 210, 385, 557
SfaNI	GCATC	1 cut(s)	381
SinI	GGWCC	1 cut(s)	607
SmiMI	CAYNNNNRTG	2 cut(s)	153, 815
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	3 cut(s)	217, 679, 772
SsiI	CCGC	4 cut(s)	201, 394, 447, 844
SspMI	CTAG	4 cut(s)	126, 183, 264, 896
SstI	GAGCTC	2 cut(s)	110, 385
StyD4I	CCNGG	1 cut(s)	616
StyI	CCWWGG	2 cut(s)	813, 907
TaaI	ACNGT	4 cut(s)	54, 98, 355, 547
TaiI	ACGT	2 cut(s)	519, 785
TasI	AATT	3 cut(s)	217, 679, 772
TatI	WGTACW	2 cut(s)	260, 649
TauI	GCSGC	2 cut(s)	450, 846
TfiI	GAWTC	1 cut(s)	830
Tru1I	TTAA	3 cut(s)	93, 678, 891
Tru9I	TTAA	3 cut(s)	93, 678, 891
TscAI	CASTG	4 cut(s)	136, 552, 562, 699
TseI	GCWGC	3 cut(s)	586, 750, 753
TspDTI	ATGAA	6 cut(s)	165, 254, 401, 416, 468, 503
TspRI	CASTG	4 cut(s)	136, 552, 562, 699
VpaK11BI	GGWCC	1 cut(s)	607
XapI	RAATTY	2 cut(s)	217, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	924
XmnI	GAANNNNTTC	2 cut(s)	10, 156
XspI	CTAG	4 cut(s)	126, 183, 264, 896
ZrmI	AGTACT	2 cut(s)	262, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.