Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Forward (+)

61036776 .. 61040662

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26945

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGATGTACCTGAGCTCAAACTCAAACCCTATAATGAGAACTACTTCTTCACCCTTGCCTGATCTCTCTTTACAGATCAGCCCACCATCAGATCACTACGAGATGGGTTTAGCAAGAAAAGCACTTAACGGTGATAGGAGCTCAACCGCCGACTCCACTAGTAGTGGGAGTGATTTGAGTCATGAAAATGTTCTCTACCACTTGGATCAGAGGACTAATTATAATCTCACTTCCGCTGAGCCCGAGCCAAATTTGAGTTTAGGTCTTGAAATGAAGGATATCATGAGTAGTAGTACTAGTTCAACACCTCTACTGCCAAGAAACTTCAATCATCATCATCCTCAAATCTACGGCCGAGATTTCAAAAGAAGCGCCAGAACTGTCATGAATGTGAAAAGAAGCGTCAGAGCTCCGAGGATGCGGTGGACTACAACCCTTCATGCCCATTTCGTTCATGCAGTCCAGCTTCTCGGCGGCCATGAAAGAGCAACGCCAAAATCGGTGTTAGAGTTGATGAATGTGAAGGATCTAACTCTTGCACACGTGAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACCACAAAGGAACAGGAAACGAAGGGCAGCAGATAGATATGGGTTTGGACCAAAATCCAGGGAATAATAATGCTCAAGTAAATGAATCAGTACTACCTTGTGATTCTGAGAAAGCTATTAATTCACCTCCAACACTGCTTCTGCAAAATCCCAGCAGAGGATCATGGCATTCTGCAAGGGAGACAAATGGCAGCTGCAAACTAAGTCATGGAAATTCTTTGACGTATTCTCATTCCCCATCCTCAAATGGCACCAAGGTGGAGGAGGAGGATTCGGGTTCAGGCCGCCAGTTGGATTGTAGCTCCTTGTCATCTTCGGATCATATGTATCTTAACCTAGAGTTCACCCTTGGAAGGCCAAGTGGCGAATGGTCTATGCTCAACACCCTCAACCTTCAAATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

330

Amino Acids

36.47

Weight (kDa)

6.78

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	139 - 190	1.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	836
AciI	CCGC	5 cut(s)	147, 234, 421, 474, 871
AclWI	GGATC	4 cut(s)	213, 534, 754, 912
AcoI	YGGCCR	2 cut(s)	352, 475
AcsI	RAATTY	2 cut(s)	250, 799
AcvI	CACGTG	1 cut(s)	544
AfaI	GTAC	3 cut(s)	8, 295, 678
AfiI	CCNNNNNNNGG	3 cut(s)	743, 877, 939
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	5 cut(s)	269, 303, 328, 364, 983
AhlI	ACTAGT	2 cut(s)	158, 296
AjnI	CCWGG	1 cut(s)	643
AleI	CACNNNNGTG	1 cut(s)	842
AluBI	AGCT	7 cut(s)	15, 141, 410, 466, 701, 780, 888
AluI	AGCT	7 cut(s)	15, 141, 410, 466, 701, 780, 888
Alw21I	GWGCWC	4 cut(s)	17, 143, 412, 584
Alw26I	GTCTC	1 cut(s)	761
AlwI	GGATC	4 cut(s)	213, 534, 754, 912
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	4 cut(s)	352, 475, 868, 941
ApeKI	GCWGC	3 cut(s)	613, 777, 780
ApoI	RAATTY	2 cut(s)	250, 799
AseI	ATTAAT	1 cut(s)	705
Asp700I	GAANNNNTTC	2 cut(s)	43, 189
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	4 cut(s)	42, 143, 702, 922
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	836
BanII	GRGCYC	4 cut(s)	17, 143, 243, 412
BbrPI	CACGTG	1 cut(s)	544
Bbv12I	GWGCWC	4 cut(s)	17, 143, 412, 584
BbvI	GCAGC	3 cut(s)	625, 767, 789
BccI	CCATC	3 cut(s)	94, 97, 832
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	761
BcuI	ACTAGT	2 cut(s)	158, 296
BfaI	CTAG	3 cut(s)	159, 297, 923
BfoI	RGCGCY	1 cut(s)	375
BisI	GCNGC	5 cut(s)	475, 614, 778, 781, 871
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	5 cut(s)	476, 615, 779, 782, 872
BmcAI	AGTACT	2 cut(s)	295, 678
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	634
BmiI	GGNNCC	1 cut(s)	838
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	544
BsaJI	CCNNGG	4 cut(s)	413, 644, 840, 934
Bsc4I	CCNNNNNNNGG	3 cut(s)	743, 877, 939
Bse1I	ACTGG	1 cut(s)	874
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	4 cut(s)	413, 644, 840, 934
BseGI	GGATG	3 cut(s)	337, 423, 824
BseLI	CCNNNNNNNGG	3 cut(s)	743, 877, 939
BseMII	CTCAG	2 cut(s)	228, 684
BseNI	ACTGG	1 cut(s)	874
BseRI	GAGGAG	2 cut(s)	863, 866
BseX3I	CGGCCG	1 cut(s)	352
BseXI	GCAGC	3 cut(s)	625, 767, 789
BseYI	CCCAGC	1 cut(s)	737
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	4 cut(s)	354, 477, 870, 943
BshNI	GGYRCC	1 cut(s)	836
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	4 cut(s)	17, 143, 412, 584
BsiHKCI	CYCGRG	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	743, 877, 939
BsmAI	GTCTC	1 cut(s)	761
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	4 cut(s)	354, 477, 870, 943
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	5 cut(s)	17, 143, 243, 412, 584
Bsp143I	GATC	7 cut(s)	61, 75, 91, 205, 526, 746, 904
Bsp1720I	GCTNAGC	1 cut(s)	237
BspACI	CCGC	5 cut(s)	147, 234, 421, 474, 871
BspANI	GGCC	4 cut(s)	354, 477, 870, 943
BspCNI	CTCAG	2 cut(s)	229, 685
BspHI	TCATGA	3 cut(s)	181, 282, 384
BspLI	GGNNCC	1 cut(s)	838
BspPI	GGATC	4 cut(s)	213, 534, 754, 912
BspQI	GCTCTTC	1 cut(s)	572
BspT107I	GGYRCC	1 cut(s)	836
BsrI	ACTGG	1 cut(s)	874
BssECI	CCNNGG	4 cut(s)	413, 644, 840, 934
BssMI	GATC	7 cut(s)	61, 75, 91, 205, 526, 746, 904
BssT1I	CCWWGG	2 cut(s)	840, 934
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	3 cut(s)	131, 382, 574
Bst6I	CTCTTC	2 cut(s)	542, 572
BstBAI	YACGTR	1 cut(s)	544
BstDEI	CTNAG	4 cut(s)	11, 237, 693, 788
BstF5I	GGATG	3 cut(s)	337, 423, 824
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	7 cut(s)	64, 78, 94, 208, 529, 749, 907
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	7 cut(s)	61, 75, 91, 205, 526, 746, 904
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	643
BstV1I	GCAGC	3 cut(s)	625, 767, 789
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	354, 477, 870, 943
BtsCI	GGATG	3 cut(s)	337, 423, 824
BtsI	GCAGTG	1 cut(s)	719
BtsIMutI	CAGTG	3 cut(s)	579, 582, 719
CciI	TCATGA	3 cut(s)	181, 282, 384
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	634
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	3 cut(s)	7, 294, 677
CviAII	CATG	8 cut(s)	182, 283, 385, 440, 455, 479, 750, 794
CviQI	GTAC	3 cut(s)	7, 294, 677
DdeI	CTNAG	4 cut(s)	11, 237, 693, 788
DpnI	GATC	7 cut(s)	63, 77, 93, 207, 528, 748, 906
DpnII	GATC	7 cut(s)	61, 75, 91, 205, 526, 746, 904
EaeI	YGGCCR	2 cut(s)	352, 475
EagI	CGGCCG	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	542, 572
EarI	CTCTTC	2 cut(s)	542, 572
Ecl136II	GAGCTC	3 cut(s)	15, 141, 410
EclXI	CGGCCG	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	840, 934
Eco24I	GRGCYC	4 cut(s)	17, 143, 243, 412
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	634
Eco52I	CGGCCG	1 cut(s)	352
Eco53kI	GAGCTC	3 cut(s)	15, 141, 410
Eco72I	CACGTG	1 cut(s)	544
Eco88I	CYCGRG	1 cut(s)	242
EcoICRI	GAGCTC	3 cut(s)	15, 141, 410
EcoRII	CCWGG	1 cut(s)	643
EcoRV	GATATC	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	840, 934
EcoT38I	GRGCYC	4 cut(s)	17, 143, 243, 412
ErhI	CCWWGG	2 cut(s)	840, 934
FaeI	CATG	8 cut(s)	185, 286, 388, 443, 458, 482, 753, 797
FatI	CATG	8 cut(s)	181, 282, 384, 439, 454, 478, 749, 793
FauNDI	CATATG	1 cut(s)	909
Fnu4HI	GCNGC	5 cut(s)	475, 614, 778, 781, 871
FokI	GGATG	3 cut(s)	324, 430, 811
FriOI	GRGCYC	4 cut(s)	17, 143, 243, 412
Fsp4HI	GCNGC	5 cut(s)	475, 614, 778, 781, 871
FspBI	CTAG	3 cut(s)	159, 297, 923
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	5 cut(s)	475, 614, 778, 781, 871
GsaI	CCCAGC	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	4 cut(s)	354, 477, 870, 943
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	8 cut(s)	185, 286, 388, 443, 458, 482, 753, 797
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	6 cut(s)	152, 178, 550, 671, 689, 857
HphI	GGTGA	4 cut(s)	42, 143, 702, 922
Hpy166II	GTNNAC	2 cut(s)	426, 930
Hpy188I	TCNGA	6 cut(s)	91, 210, 407, 414, 694, 904
Hpy188III	TCNNGA	4 cut(s)	182, 266, 283, 385
Hpy8I	GTNNAC	2 cut(s)	426, 930
HpyAV	CCTTC	6 cut(s)	268, 446, 517, 602, 933, 989
HpyCH4III	ACNGT	3 cut(s)	131, 382, 574
HpyCH4IV	ACGT	2 cut(s)	543, 809
HpyCH4V	TGCA	6 cut(s)	458, 539, 559, 730, 761, 783
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	4 cut(s)	11, 237, 693, 788
HpySE526I	ACGT	2 cut(s)	543, 809
Hsp92II	CATG	8 cut(s)	185, 286, 388, 443, 458, 482, 753, 797
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	7 cut(s)	61, 75, 91, 205, 526, 746, 904
LguI	GCTCTTC	1 cut(s)	572
LmnI	GCTCC	3 cut(s)	138, 415, 893
Lsp1109I	GCAGC	3 cut(s)	625, 767, 789
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	3 cut(s)	159, 297, 923
MaeII	ACGT	2 cut(s)	543, 809
MalI	GATC	7 cut(s)	63, 77, 93, 207, 528, 748, 906
MboI	GATC	7 cut(s)	61, 75, 91, 205, 526, 746, 904
MboII	GAAGA	4 cut(s)	39, 559, 589, 891
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	5 cut(s)	17, 143, 243, 412, 584
MluCI	AATT	4 cut(s)	217, 250, 706, 799
MlyI	GAGTC	3 cut(s)	146, 187, 559
MmeI	TCCRAC	2 cut(s)	740, 858
MroXI	GAANNNNTTC	2 cut(s)	43, 189
MseI	TTAA	3 cut(s)	126, 705, 918
MslI	CAYNNNNRTG	3 cut(s)	186, 389, 842
MspA1I	CMGCKG	2 cut(s)	236, 780
MspR9I	CCNGG	1 cut(s)	645
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeI	CATATG	1 cut(s)	909
NdeII	GATC	7 cut(s)	61, 75, 91, 205, 526, 746, 904
NlaIII	CATG	8 cut(s)	185, 286, 388, 443, 458, 482, 753, 797
NlaIV	GGNNCC	1 cut(s)	838
NmeAIII	GCCGAG	2 cut(s)	380, 450
OliI	CACNNNNGTG	1 cut(s)	842
PagI	TCATGA	3 cut(s)	181, 282, 384
PciSI	GCTCTTC	1 cut(s)	572
PctI	GAATGC	1 cut(s)	754
PdmI	GAANNNNTTC	2 cut(s)	43, 189
PfeI	GAWTC	3 cut(s)	671, 689, 857
PkrI	GCNGC	5 cut(s)	476, 615, 779, 782, 872
PleI	GAGTC	3 cut(s)	146, 186, 558
PmaCI	CACGTG	1 cut(s)	544
PmlI	CACGTG	1 cut(s)	544
PpsI	GAGTC	3 cut(s)	146, 186, 558
Ppu21I	YACGTR	1 cut(s)	544
PshBI	ATTAAT	1 cut(s)	705
PsiI	TTATAA	1 cut(s)	222
Psp124BI	GAGCTC	3 cut(s)	17, 143, 412
Psp6I	CCWGG	1 cut(s)	643
PspCI	CACGTG	1 cut(s)	544
PspFI	CCCAGC	1 cut(s)	737
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	1 cut(s)	634
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	780
RsaI	GTAC	3 cut(s)	8, 295, 678
RsaNI	GTAC	3 cut(s)	7, 294, 677
RseI	CAYNNNNRTG	3 cut(s)	186, 389, 842
SacI	GAGCTC	3 cut(s)	17, 143, 412
SapI	GCTCTTC	1 cut(s)	572
SaqAI	TTAA	3 cut(s)	126, 705, 918
SatI	GCNGC	5 cut(s)	475, 614, 778, 781, 871
Sau3AI	GATC	7 cut(s)	61, 75, 91, 205, 526, 746, 904
Sau96I	GGNCC	1 cut(s)	634
ScaI	AGTACT	2 cut(s)	295, 678
SchI	GAGTC	3 cut(s)	146, 187, 559
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	5 cut(s)	17, 143, 243, 412, 584
SfaNI	GCATC	1 cut(s)	408
SinI	GGWCC	1 cut(s)	634
SmiMI	CAYNNNNRTG	3 cut(s)	186, 389, 842
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
SpeI	ACTAGT	2 cut(s)	158, 296
Sse9I	AATT	4 cut(s)	217, 250, 706, 799
SsiI	CCGC	5 cut(s)	147, 234, 421, 474, 871
SspMI	CTAG	3 cut(s)	159, 297, 923
SstI	GAGCTC	3 cut(s)	17, 143, 412
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	2 cut(s)	840, 934
TaaI	ACNGT	3 cut(s)	131, 382, 574
TaiI	ACGT	2 cut(s)	546, 812
TasI	AATT	4 cut(s)	217, 250, 706, 799
TatI	WGTACW	2 cut(s)	293, 676
TauI	GCSGC	2 cut(s)	477, 873
TfiI	GAWTC	3 cut(s)	671, 689, 857
Tru1I	TTAA	3 cut(s)	126, 705, 918
Tru9I	TTAA	3 cut(s)	126, 705, 918
TscAI	CASTG	3 cut(s)	579, 589, 726
TseI	GCWGC	3 cut(s)	613, 777, 780
TspDTI	ATGAA	8 cut(s)	198, 287, 401, 428, 443, 495, 530, 684
TspRI	CASTG	3 cut(s)	579, 589, 726
VpaK11BI	GGWCC	1 cut(s)	634
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	2 cut(s)	250, 799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	951
XmnI	GAANNNNTTC	2 cut(s)	43, 189
XspI	CTAG	3 cut(s)	159, 297, 923
ZrmI	AGTACT	2 cut(s)	295, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.