Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Forward (+)

60273480 .. 60276191

Gene Structure 2712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG405600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGATGTACCTGAGCTCAAACTCAAACCCTATAATGAGAACTACTTCTTCACCCTTGCCTGATCTCTCTTTACAGATTAGCCCACCATCAGATCACTACGAGATGGGTTTAGCAAGAAAAGCACTTAACGGTGGTAGGAGCTCAACCACCGACTCCACTAGTAGTGGGAGTGATTTGACTCATTTGAGTCATGAAAATGTTCTCTTCCACTTGGATCAGAGGACAAATTATAATCTCACTTCCGCTGAGCCCGACCCAAATTTGAGTTTAGGTCTTGAAATGAAGGATATCATGAGTAGTAGTACTAGTTCAACACCTCTACTGCCAAGAAACTTCAATCATCATCATCCTCAAATCTACGGCCGAGATTTCAAAAGAAGCGCCAGAACTGTCGGGAATGTGAAAAGAAGCGTCAGAGCTCCGAGGATGCGGTGGACTACAACCCTTCATGCCCATTTCGTTCATGCAGTCCAGCTTCTCGGCGGCCATGAAAGAGCAACGCCAAAATCGGTGTTAGAGTTGATGAATGTGAAGGATCTAACTCTTGCACACGTGAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACCACAAAGGAACAGGAAACGAAGGGCAGCAGATAGATATGGGTTTGGACCAAAATCCAGGGAATAATAATGCTCAAGTAAATGGATCAGTACTACCTTGTGATTCTGAGAAAGCTATTAATTCACCTCCAACACTGCTTCTGCAAAATCCCAGCAGAGGATCATGGCGTTCTGCAAGGGAGACAAATGGCAGCTGTAAACTAAGTCATGGAAATTCTTTGACGTATTCTCATTCCCCATCCTCAAATGGCACCAAGGTGGAGGAGGAGGATTCGGGTTCAGGCCGCCAGTTGGATTGTAGCTCCTTGTCATCTTCGGATCATATGTATCTTAACCTAGAGTTCACCCTTGGAAGGCCAAGTGGCGAATGGTCTATGCTCAACACCCTCAACCTTCAAATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

333

Amino Acids

36.63

Weight (kDa)

7.87

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	142 - 193	1.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	845
AciI	CCGC	4 cut(s)	243, 430, 483, 880
AclWI	GGATC	5 cut(s)	222, 543, 688, 763, 921
AcoI	YGGCCR	2 cut(s)	361, 484
AcsI	RAATTY	2 cut(s)	259, 808
AcvI	CACGTG	1 cut(s)	553
AfaI	GTAC	3 cut(s)	8, 304, 687
AfiI	CCNNNNNNNGG	3 cut(s)	752, 886, 948
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	5 cut(s)	278, 312, 337, 373, 992
AhlI	ACTAGT	2 cut(s)	158, 305
AjnI	CCWGG	1 cut(s)	652
AleI	CACNNNNGTG	1 cut(s)	851
AluBI	AGCT	7 cut(s)	15, 141, 419, 475, 710, 789, 897
AluI	AGCT	7 cut(s)	15, 141, 419, 475, 710, 789, 897
Alw21I	GWGCWC	4 cut(s)	17, 143, 421, 593
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	5 cut(s)	222, 543, 688, 763, 921
AoxI	GGCC	4 cut(s)	361, 484, 877, 950
ApeKI	GCWGC	2 cut(s)	622, 786
ApoI	RAATTY	2 cut(s)	259, 808
AseI	ATTAAT	1 cut(s)	714
Asp700I	GAANNNNTTC	2 cut(s)	43, 198
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	643
AsuHPI	GGTGA	3 cut(s)	42, 711, 931
AvaII	GGWCC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	845
BanII	GRGCYC	4 cut(s)	17, 143, 252, 421
BbrPI	CACGTG	1 cut(s)	553
Bbv12I	GWGCWC	4 cut(s)	17, 143, 421, 593
BbvI	GCAGC	2 cut(s)	634, 798
BccI	CCATC	3 cut(s)	94, 97, 841
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	770
BcuI	ACTAGT	2 cut(s)	158, 305
BfaI	CTAG	3 cut(s)	159, 306, 932
BfoI	RGCGCY	1 cut(s)	384
BisI	GCNGC	4 cut(s)	484, 623, 787, 880
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	4 cut(s)	485, 624, 788, 881
BmcAI	AGTACT	2 cut(s)	304, 687
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	1 cut(s)	643
BmgT120I	GGNCC	1 cut(s)	643
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	1 cut(s)	654
BmsI	GCATC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	553
BsaJI	CCNNGG	4 cut(s)	422, 653, 849, 943
Bsc4I	CCNNNNNNNGG	3 cut(s)	752, 886, 948
Bse1I	ACTGG	1 cut(s)	883
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	4 cut(s)	422, 653, 849, 943
BseGI	GGATG	3 cut(s)	346, 432, 833
BseLI	CCNNNNNNNGG	3 cut(s)	752, 886, 948
BseMII	CTCAG	2 cut(s)	237, 693
BseNI	ACTGG	1 cut(s)	883
BseRI	GAGGAG	2 cut(s)	872, 875
BseX3I	CGGCCG	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	634, 798
BseYI	CCCAGC	1 cut(s)	746
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	4 cut(s)	363, 486, 879, 952
BshNI	GGYRCC	1 cut(s)	845
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	4 cut(s)	17, 143, 421, 593
BslI	CCNNNNNNNGG	3 cut(s)	752, 886, 948
BsmAI	GTCTC	1 cut(s)	770
BsnI	GGCC	4 cut(s)	363, 486, 879, 952
Bsp1286I	GDGCHC	5 cut(s)	17, 143, 252, 421, 593
Bsp143I	GATC	7 cut(s)	61, 91, 214, 535, 680, 755, 913
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	4 cut(s)	243, 430, 483, 880
BspANI	GGCC	4 cut(s)	363, 486, 879, 952
BspCNI	CTCAG	2 cut(s)	238, 694
BspHI	TCATGA	2 cut(s)	190, 291
BspLI	GGNNCC	1 cut(s)	847
BspPI	GGATC	5 cut(s)	222, 543, 688, 763, 921
BspQI	GCTCTTC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	845
BsrI	ACTGG	1 cut(s)	883
BssECI	CCNNGG	4 cut(s)	422, 653, 849, 943
BssMI	GATC	7 cut(s)	61, 91, 214, 535, 680, 755, 913
BssT1I	CCWWGG	2 cut(s)	849, 943
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	131, 391, 583
Bst6I	CTCTTC	3 cut(s)	209, 551, 581
BstBAI	YACGTR	1 cut(s)	553
BstDEI	CTNAG	4 cut(s)	11, 246, 702, 797
BstF5I	GGATG	3 cut(s)	346, 432, 833
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	7 cut(s)	64, 94, 217, 538, 683, 758, 916
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	7 cut(s)	61, 91, 214, 535, 680, 755, 913
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	654
BstSCI	CCNGG	1 cut(s)	652
BstV1I	GCAGC	2 cut(s)	634, 798
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BstZI	CGGCCG	1 cut(s)	361
BsuRI	GGCC	4 cut(s)	363, 486, 879, 952
BtsCI	GGATG	3 cut(s)	346, 432, 833
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	3 cut(s)	588, 591, 728
CciI	TCATGA	2 cut(s)	190, 291
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	643
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	7, 303, 686
CviAII	CATG	7 cut(s)	191, 292, 449, 464, 488, 759, 803
CviQI	GTAC	3 cut(s)	7, 303, 686
DdeI	CTNAG	4 cut(s)	11, 246, 702, 797
DpnI	GATC	7 cut(s)	63, 93, 216, 537, 682, 757, 915
DpnII	GATC	7 cut(s)	61, 91, 214, 535, 680, 755, 913
EaeI	YGGCCR	2 cut(s)	361, 484
EagI	CGGCCG	1 cut(s)	361
Eam1104I	CTCTTC	3 cut(s)	209, 551, 581
EarI	CTCTTC	3 cut(s)	209, 551, 581
Ecl136II	GAGCTC	3 cut(s)	15, 141, 419
EclXI	CGGCCG	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	849, 943
Eco24I	GRGCYC	4 cut(s)	17, 143, 252, 421
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	643
Eco52I	CGGCCG	1 cut(s)	361
Eco53kI	GAGCTC	3 cut(s)	15, 141, 419
Eco72I	CACGTG	1 cut(s)	553
EcoICRI	GAGCTC	3 cut(s)	15, 141, 419
EcoRII	CCWGG	1 cut(s)	652
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	849, 943
EcoT38I	GRGCYC	4 cut(s)	17, 143, 252, 421
ErhI	CCWWGG	2 cut(s)	849, 943
FaeI	CATG	7 cut(s)	194, 295, 452, 467, 491, 762, 806
FatI	CATG	7 cut(s)	190, 291, 448, 463, 487, 758, 802
FauNDI	CATATG	1 cut(s)	918
Fnu4HI	GCNGC	4 cut(s)	484, 623, 787, 880
FokI	GGATG	3 cut(s)	333, 439, 820
FriOI	GRGCYC	4 cut(s)	17, 143, 252, 421
Fsp4HI	GCNGC	4 cut(s)	484, 623, 787, 880
FspBI	CTAG	3 cut(s)	159, 306, 932
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	4 cut(s)	484, 623, 787, 880
GsaI	CCCAGC	1 cut(s)	750
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	4 cut(s)	363, 486, 879, 952
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	7 cut(s)	194, 295, 452, 467, 491, 762, 806
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HinfI	GANTC	6 cut(s)	152, 178, 187, 559, 698, 866
HphI	GGTGA	3 cut(s)	42, 711, 931
Hpy166II	GTNNAC	3 cut(s)	435, 794, 939
Hpy188I	TCNGA	6 cut(s)	91, 219, 416, 423, 703, 913
Hpy188III	TCNNGA	4 cut(s)	191, 275, 292, 394
Hpy8I	GTNNAC	3 cut(s)	435, 794, 939
HpyAV	CCTTC	6 cut(s)	277, 455, 526, 611, 942, 998
HpyCH4III	ACNGT	3 cut(s)	131, 391, 583
HpyCH4IV	ACGT	2 cut(s)	552, 818
HpyCH4V	TGCA	5 cut(s)	467, 548, 568, 739, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	4 cut(s)	11, 246, 702, 797
HpySE526I	ACGT	2 cut(s)	552, 818
Hsp92II	CATG	7 cut(s)	194, 295, 452, 467, 491, 762, 806
HspAI	GCGC	1 cut(s)	381
Kzo9I	GATC	7 cut(s)	61, 91, 214, 535, 680, 755, 913
LguI	GCTCTTC	1 cut(s)	581
LmnI	GCTCC	3 cut(s)	138, 424, 902
Lsp1109I	GCAGC	2 cut(s)	634, 798
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	3 cut(s)	159, 306, 932
MaeII	ACGT	2 cut(s)	552, 818
MalI	GATC	7 cut(s)	63, 93, 216, 537, 682, 757, 915
MboI	GATC	7 cut(s)	61, 91, 214, 535, 680, 755, 913
MboII	GAAGA	5 cut(s)	39, 196, 568, 598, 900
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	5 cut(s)	17, 143, 252, 421, 593
MluCI	AATT	4 cut(s)	226, 259, 715, 808
MlyI	GAGTC	4 cut(s)	146, 172, 196, 568
MmeI	TCCRAC	2 cut(s)	749, 867
MroXI	GAANNNNTTC	2 cut(s)	43, 198
MseI	TTAA	3 cut(s)	126, 714, 927
MslI	CAYNNNNRTG	2 cut(s)	195, 851
MspA1I	CMGCKG	2 cut(s)	245, 789
MspR9I	CCNGG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeI	CATATG	1 cut(s)	918
NdeII	GATC	7 cut(s)	61, 91, 214, 535, 680, 755, 913
NlaIII	CATG	7 cut(s)	194, 295, 452, 467, 491, 762, 806
NlaIV	GGNNCC	1 cut(s)	847
NmeAIII	GCCGAG	2 cut(s)	389, 459
OliI	CACNNNNGTG	1 cut(s)	851
PagI	TCATGA	2 cut(s)	190, 291
PciSI	GCTCTTC	1 cut(s)	581
PdmI	GAANNNNTTC	2 cut(s)	43, 198
PfeI	GAWTC	2 cut(s)	698, 866
PkrI	GCNGC	4 cut(s)	485, 624, 788, 881
PleI	GAGTC	4 cut(s)	146, 172, 195, 567
PmaCI	CACGTG	1 cut(s)	553
PmlI	CACGTG	1 cut(s)	553
PpsI	GAGTC	4 cut(s)	146, 172, 195, 567
Ppu21I	YACGTR	1 cut(s)	553
PshBI	ATTAAT	1 cut(s)	714
PsiI	TTATAA	1 cut(s)	231
Psp124BI	GAGCTC	3 cut(s)	17, 143, 421
Psp6I	CCWGG	1 cut(s)	652
PspCI	CACGTG	1 cut(s)	553
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	1 cut(s)	847
PspPI	GGNCC	1 cut(s)	643
PsrI	GAACNNNNNNTAC	2 cut(s)	292, 324
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	789
RsaI	GTAC	3 cut(s)	8, 304, 687
RsaNI	GTAC	3 cut(s)	7, 303, 686
RseI	CAYNNNNRTG	2 cut(s)	195, 851
SacI	GAGCTC	3 cut(s)	17, 143, 421
SapI	GCTCTTC	1 cut(s)	581
SaqAI	TTAA	3 cut(s)	126, 714, 927
SatI	GCNGC	4 cut(s)	484, 623, 787, 880
Sau3AI	GATC	7 cut(s)	61, 91, 214, 535, 680, 755, 913
Sau96I	GGNCC	1 cut(s)	643
ScaI	AGTACT	2 cut(s)	304, 687
SchI	GAGTC	4 cut(s)	146, 172, 196, 568
ScrFI	CCNGG	1 cut(s)	654
SduI	GDGCHC	5 cut(s)	17, 143, 252, 421, 593
SfaNI	GCATC	1 cut(s)	417
SinI	GGWCC	1 cut(s)	643
SmiMI	CAYNNNNRTG	2 cut(s)	195, 851
SmlI	CTYRAG	1 cut(s)	669
SmoI	CTYRAG	1 cut(s)	669
SpeI	ACTAGT	2 cut(s)	158, 305
Sse9I	AATT	4 cut(s)	226, 259, 715, 808
SsiI	CCGC	4 cut(s)	243, 430, 483, 880
SspMI	CTAG	3 cut(s)	159, 306, 932
SstI	GAGCTC	3 cut(s)	17, 143, 421
StyD4I	CCNGG	1 cut(s)	652
StyI	CCWWGG	2 cut(s)	849, 943
TaaI	ACNGT	3 cut(s)	131, 391, 583
TaiI	ACGT	2 cut(s)	555, 821
TasI	AATT	4 cut(s)	226, 259, 715, 808
TatI	WGTACW	2 cut(s)	302, 685
TauI	GCSGC	2 cut(s)	486, 882
TfiI	GAWTC	2 cut(s)	698, 866
Tru1I	TTAA	3 cut(s)	126, 714, 927
Tru9I	TTAA	3 cut(s)	126, 714, 927
TscAI	CASTG	3 cut(s)	588, 598, 735
TseI	GCWGC	2 cut(s)	622, 786
TspDTI	ATGAA	6 cut(s)	207, 296, 437, 452, 504, 539
TspRI	CASTG	3 cut(s)	588, 598, 735
VpaK11BI	GGWCC	1 cut(s)	643
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	2 cut(s)	259, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	960
XmnI	GAANNNNTTC	2 cut(s)	43, 198
XspI	CTAG	3 cut(s)	159, 306, 932
ZrmI	AGTACT	2 cut(s)	304, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.