Rroxscaffold_7G00168130
MYB Family

transcription factor KAN4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012190
Physical Location & Seq
Reverse (-)
9033645 .. 9037089
3445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168130.1

Sequence Viewer

Length: 999 bp
ATGATGTACCTGAGCTCAAACTCAAACCCTATAATGAGAACTACTTCTTCACCCTTGCCTGATCTCTCTTTACAGATCAGCCCACCGACAGATCACTACGAGATGGGTATAGCAAGAAAAGCACTTAACGGTGATAGGAGCTCAACCACCGACTCCACTAGCAGTGGGAGTGATTTGAGTCATGAAAATGTTCTCTACCACTTGGATCAGAGGACTAGTTATAATCTCACTTCCGCTGAGCCCGAGCCAAATTTGAGTTTAGGTCTTGAAATGAAGGATATCATGAGTAGTAGTACTAGTTCAACACCTCTACTGCCAAGAAACTTCAATCATCATCATCATCATCCTCAAATCTACGGCCGAGATTTCAAAAGAAGCGCCAGAACCGTCGGGAATGTGAAAAGAAGCGTCAGAGCTCCGAGGATGCGGTGGACTACAACCCTTCATGCCCATTTCGTTCATGCAGTCCAGCTTCTCGGCGGCCATGAAAGAGCAACGCCAAAATCGGTGTTAGAGTTGATGAATGTGAAGGATCTAACTCTTGCACACGTGAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACCACAAAGGAACAGGAAACGAAGGGCAGCAGATAGATATGGGTTTGGACCAAAATCCAGGGAATAATAATGCTCAAGTAAATGGATCAGTACTACCTTGTGATTCTGAGAAAGCTATTAATTCACCTCCAACACTGCTTCTGCAAAATCCCAGCAGAGGATCATGGCATTCTGCAAGGGACACAAATGGCAGCTGCAAACTAAGTCATGGAAATTCTTTGACGTATTCTCATTCCCCATCCTCAAATGGCACCAAGGTGGAGGAGGAGGATTCGGGTTCAGGCCGCCAGTTGGATTGTAGCTCCTTGTCATCTTCGGATCATATGTATCTTAACCTAGAGTTCACCCTTGGAAGGCCAAGTGGCGAATGGTCTATGCTCAACGCCCTCAACCTTCAAATGACTTGA

Protein Analysis

332

Amino Acids

36.57

Weight (kDa)

7.04

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 141 - 192 1.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42630 AT5G42630
fragaria_vesca FvH4_2g40620
malus_domestica MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica Prupe.1G387800_v2.0.a1
pyrus_communis pycom08g03140 pycom15g03130
rosa_chinensis RchiOBHm_Chr6g0300071
rosa_laevigata RLG00000011369
rosa_multiflora Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii Rroxscaffold_7G00168130
rosa_rugosa Rorug06G0293800
rosa_samantha Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana Rw6G035490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 842
AciI CCGC 4 cut(s) 234, 427, 480, 877
AclWI GGATC 5 cut(s) 213, 540, 685, 760, 918
AcoI YGGCCR 2 cut(s) 358, 481
AcsI RAATTY 2 cut(s) 250, 805
AcvI CACGTG 1 cut(s) 550
AfaI GTAC 3 cut(s) 8, 295, 684
AfiI CCNNNNNNNGG 3 cut(s) 749, 883, 945
AflIII ACRYGT 1 cut(s) 547
AgsI TTSAA 5 cut(s) 269, 303, 328, 370, 989
AhlI ACTAGT 2 cut(s) 215, 296
AjnI CCWGG 1 cut(s) 649
AleI CACNNNNGTG 1 cut(s) 848
AluBI AGCT 7 cut(s) 15, 141, 416, 472, 707, 786, 894
AluI AGCT 7 cut(s) 15, 141, 416, 472, 707, 786, 894
Alw21I GWGCWC 4 cut(s) 17, 143, 418, 590
AlwI GGATC 5 cut(s) 213, 540, 685, 760, 918
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 4 cut(s) 358, 481, 874, 947
ApeKI GCWGC 3 cut(s) 619, 783, 786
ApoI RAATTY 2 cut(s) 250, 805
AseI ATTAAT 1 cut(s) 711
Asp700I GAANNNNTTC 2 cut(s) 43, 189
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 640
AsuHPI GGTGA 4 cut(s) 42, 143, 708, 928
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 842
BanII GRGCYC 4 cut(s) 17, 143, 243, 418
BbrPI CACGTG 1 cut(s) 550
Bbv12I GWGCWC 4 cut(s) 17, 143, 418, 590
BbvI GCAGC 3 cut(s) 631, 773, 795
BccI CCATC 2 cut(s) 97, 838
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 651
BcuI ACTAGT 2 cut(s) 215, 296
BfaI CTAG 4 cut(s) 159, 216, 297, 929
BfoI RGCGCY 1 cut(s) 381
BisI GCNGC 5 cut(s) 481, 620, 784, 787, 877
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 5 cut(s) 482, 621, 785, 788, 878
BmcAI AGTACT 2 cut(s) 295, 684
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 640
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 844
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 550
BsaJI CCNNGG 4 cut(s) 419, 650, 846, 940
Bsc4I CCNNNNNNNGG 3 cut(s) 749, 883, 945
Bse1I ACTGG 1 cut(s) 880
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 4 cut(s) 419, 650, 846, 940
BseGI GGATG 3 cut(s) 343, 429, 830
BseLI CCNNNNNNNGG 3 cut(s) 749, 883, 945
BseMII CTCAG 2 cut(s) 228, 690
BseNI ACTGG 1 cut(s) 880
BseRI GAGGAG 2 cut(s) 869, 872
BseX3I CGGCCG 1 cut(s) 358
BseXI GCAGC 3 cut(s) 631, 773, 795
BseYI CCCAGC 1 cut(s) 743
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 4 cut(s) 360, 483, 876, 949
BshNI GGYRCC 1 cut(s) 842
BsiEI CGRYCG 1 cut(s) 361
BsiHKAI GWGCWC 4 cut(s) 17, 143, 418, 590
BsiHKCI CYCGRG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 3 cut(s) 749, 883, 945
BsmFI GGGAC 1 cut(s) 785
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 4 cut(s) 360, 483, 876, 949
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 5 cut(s) 17, 143, 243, 418, 590
Bsp143I GATC 8 cut(s) 61, 75, 91, 205, 532, 677, 752, 910
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 4 cut(s) 234, 427, 480, 877
BspANI GGCC 4 cut(s) 360, 483, 876, 949
BspCNI CTCAG 2 cut(s) 229, 691
BspHI TCATGA 2 cut(s) 181, 282
BspLI GGNNCC 1 cut(s) 844
BspPI GGATC 5 cut(s) 213, 540, 685, 760, 918
BspQI GCTCTTC 1 cut(s) 578
BspT107I GGYRCC 1 cut(s) 842
BsrI ACTGG 1 cut(s) 880
BssECI CCNNGG 4 cut(s) 419, 650, 846, 940
BssMI GATC 8 cut(s) 61, 75, 91, 205, 532, 677, 752, 910
BssT1I CCWWGG 2 cut(s) 846, 940
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 3 cut(s) 131, 388, 580
Bst6I CTCTTC 2 cut(s) 548, 578
BstBAI YACGTR 1 cut(s) 550
BstDEI CTNAG 4 cut(s) 11, 237, 699, 794
BstF5I GGATG 3 cut(s) 343, 429, 830
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 8 cut(s) 64, 78, 94, 208, 535, 680, 755, 913
BstMBI GATC 8 cut(s) 61, 75, 91, 205, 532, 677, 752, 910
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 649
BstV1I GCAGC 3 cut(s) 631, 773, 795
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BstZI CGGCCG 1 cut(s) 358
BsuRI GGCC 4 cut(s) 360, 483, 876, 949
BtsCI GGATG 3 cut(s) 343, 429, 830
BtsI GCAGTG 2 cut(s) 169, 725
BtsIMutI CAGTG 4 cut(s) 169, 585, 588, 725
CciI TCATGA 2 cut(s) 181, 282
CfoI GCGC 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 640
CseI GACGC 1 cut(s) 397
Csp6I GTAC 3 cut(s) 7, 294, 683
CviAII CATG 7 cut(s) 182, 283, 446, 461, 485, 756, 800
CviQI GTAC 3 cut(s) 7, 294, 683
DdeI CTNAG 4 cut(s) 11, 237, 699, 794
DpnI GATC 8 cut(s) 63, 77, 93, 207, 534, 679, 754, 912
DpnII GATC 8 cut(s) 61, 75, 91, 205, 532, 677, 752, 910
EaeI YGGCCR 2 cut(s) 358, 481
EagI CGGCCG 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 548, 578
EarI CTCTTC 2 cut(s) 548, 578
Ecl136II GAGCTC 3 cut(s) 15, 141, 416
EclXI CGGCCG 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 846, 940
Eco24I GRGCYC 4 cut(s) 17, 143, 243, 418
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 640
Eco52I CGGCCG 1 cut(s) 358
Eco53kI GAGCTC 3 cut(s) 15, 141, 416
Eco72I CACGTG 1 cut(s) 550
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 3 cut(s) 15, 141, 416
EcoRII CCWGG 1 cut(s) 649
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 846, 940
EcoT38I GRGCYC 4 cut(s) 17, 143, 243, 418
ErhI CCWWGG 2 cut(s) 846, 940
FaeI CATG 7 cut(s) 185, 286, 449, 464, 488, 759, 803
FaqI GGGAC 1 cut(s) 785
FatI CATG 7 cut(s) 181, 282, 445, 460, 484, 755, 799
FauNDI CATATG 1 cut(s) 915
Fnu4HI GCNGC 5 cut(s) 481, 620, 784, 787, 877
FokI GGATG 3 cut(s) 330, 436, 817
FriOI GRGCYC 4 cut(s) 17, 143, 243, 418
Fsp4HI GCNGC 5 cut(s) 481, 620, 784, 787, 877
FspBI CTAG 4 cut(s) 159, 216, 297, 929
GlaI GCGC 1 cut(s) 379
GluI GCNGC 5 cut(s) 481, 620, 784, 787, 877
GsaI CCCAGC 1 cut(s) 747
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 4 cut(s) 360, 483, 876, 949
HgaI GACGC 1 cut(s) 397
HhaI GCGC 1 cut(s) 380
Hin1II CATG 7 cut(s) 185, 286, 449, 464, 488, 759, 803
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HinfI GANTC 5 cut(s) 152, 178, 556, 695, 863
HphI GGTGA 4 cut(s) 42, 143, 708, 928
Hpy166II GTNNAC 2 cut(s) 432, 936
Hpy188I TCNGA 5 cut(s) 210, 413, 420, 700, 910
Hpy188III TCNNGA 4 cut(s) 182, 266, 283, 391
Hpy8I GTNNAC 2 cut(s) 432, 936
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 6 cut(s) 268, 452, 523, 608, 939, 995
HpyCH4III ACNGT 3 cut(s) 131, 388, 580
HpyCH4IV ACGT 2 cut(s) 549, 815
HpyCH4V TGCA 6 cut(s) 464, 545, 565, 736, 767, 789
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 4 cut(s) 11, 237, 699, 794
HpySE526I ACGT 2 cut(s) 549, 815
Hsp92II CATG 7 cut(s) 185, 286, 449, 464, 488, 759, 803
HspAI GCGC 1 cut(s) 378
Kzo9I GATC 8 cut(s) 61, 75, 91, 205, 532, 677, 752, 910
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 3 cut(s) 138, 421, 899
Lsp1109I GCAGC 3 cut(s) 631, 773, 795
LweI GCATC 1 cut(s) 414
MaeI CTAG 4 cut(s) 159, 216, 297, 929
MaeII ACGT 2 cut(s) 549, 815
MalI GATC 8 cut(s) 63, 77, 93, 207, 534, 679, 754, 912
MboI GATC 8 cut(s) 61, 75, 91, 205, 532, 677, 752, 910
MboII GAAGA 4 cut(s) 39, 565, 595, 897
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 5 cut(s) 17, 143, 243, 418, 590
MluCI AATT 3 cut(s) 250, 712, 805
MlyI GAGTC 3 cut(s) 146, 187, 565
MmeI TCCRAC 2 cut(s) 746, 864
MroXI GAANNNNTTC 2 cut(s) 43, 189
MseI TTAA 3 cut(s) 126, 711, 924
MslI CAYNNNNRTG 2 cut(s) 186, 848
MspA1I CMGCKG 2 cut(s) 236, 786
MspR9I CCNGG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 760
MvaI CCWGG 1 cut(s) 651
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeI CATATG 1 cut(s) 915
NdeII GATC 8 cut(s) 61, 75, 91, 205, 532, 677, 752, 910
NlaIII CATG 7 cut(s) 185, 286, 449, 464, 488, 759, 803
NlaIV GGNNCC 1 cut(s) 844
NmeAIII GCCGAG 2 cut(s) 386, 456
OliI CACNNNNGTG 1 cut(s) 848
PagI TCATGA 2 cut(s) 181, 282
PciSI GCTCTTC 1 cut(s) 578
PctI GAATGC 1 cut(s) 760
PdmI GAANNNNTTC 2 cut(s) 43, 189
PfeI GAWTC 2 cut(s) 695, 863
PkrI GCNGC 5 cut(s) 482, 621, 785, 788, 878
PleI GAGTC 3 cut(s) 146, 186, 564
PmaCI CACGTG 1 cut(s) 550
PmlI CACGTG 1 cut(s) 550
PpsI GAGTC 3 cut(s) 146, 186, 564
Ppu21I YACGTR 1 cut(s) 550
PshBI ATTAAT 1 cut(s) 711
PsiI TTATAA 1 cut(s) 222
Psp124BI GAGCTC 3 cut(s) 17, 143, 418
Psp6I CCWGG 1 cut(s) 649
PspCI CACGTG 1 cut(s) 550
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 1 cut(s) 844
PspPI GGNCC 1 cut(s) 640
PsrI GAACNNNNNNTAC 2 cut(s) 283, 315
PsuI RGATCY 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 786
RsaI GTAC 3 cut(s) 8, 295, 684
RsaNI GTAC 3 cut(s) 7, 294, 683
RseI CAYNNNNRTG 2 cut(s) 186, 848
SacI GAGCTC 3 cut(s) 17, 143, 418
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 3 cut(s) 126, 711, 924
SatI GCNGC 5 cut(s) 481, 620, 784, 787, 877
Sau3AI GATC 8 cut(s) 61, 75, 91, 205, 532, 677, 752, 910
Sau96I GGNCC 1 cut(s) 640
ScaI AGTACT 2 cut(s) 295, 684
SchI GAGTC 3 cut(s) 146, 187, 565
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 5 cut(s) 17, 143, 243, 418, 590
SfaNI GCATC 1 cut(s) 414
SinI GGWCC 1 cut(s) 640
SmiMI CAYNNNNRTG 2 cut(s) 186, 848
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
SpeI ACTAGT 2 cut(s) 215, 296
Sse9I AATT 3 cut(s) 250, 712, 805
SsiI CCGC 4 cut(s) 234, 427, 480, 877
SspMI CTAG 4 cut(s) 159, 216, 297, 929
SstI GAGCTC 3 cut(s) 17, 143, 418
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 2 cut(s) 846, 940
TaaI ACNGT 3 cut(s) 131, 388, 580
TaiI ACGT 2 cut(s) 552, 818
TasI AATT 3 cut(s) 250, 712, 805
TatI WGTACW 2 cut(s) 293, 682
TauI GCSGC 2 cut(s) 483, 879
TfiI GAWTC 2 cut(s) 695, 863
Tru1I TTAA 3 cut(s) 126, 711, 924
Tru9I TTAA 3 cut(s) 126, 711, 924
TscAI CASTG 4 cut(s) 169, 585, 595, 732
TseI GCWGC 3 cut(s) 619, 783, 786
TspDTI ATGAA 6 cut(s) 198, 287, 434, 449, 501, 536
TspRI CASTG 4 cut(s) 169, 585, 595, 732
VpaK11BI GGWCC 1 cut(s) 640
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 2 cut(s) 250, 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 957
XmnI GAANNNNTTC 2 cut(s) 43, 189
XspI CTAG 4 cut(s) 159, 216, 297, 929
ZrmI AGTACT 2 cut(s) 295, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.