Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Reverse (-)

34688320 .. 34691858

Gene Structure 3539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G387800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTACCTCATGAACCCTATAAAGAGAACTAGTACTTCACCCTTGCCCGATCTCTCTTTACAGATCAGCCCTCCATCGGCCGCAGATAATCAATATCACCAAGCTGATATTGGATTGTCAAGAAAAGCACTTTACAGTACAGATAGAAGCTCCACCACCGACTCCGGCAGCAGTGGAAGTGATTTGAGCCATGAAAATGGCTTCTACCATCTTGAGAGGAGCACCGGCTATAATCTTTCTTCGGCTGATGAGCCCAAGTTGAGTTTAGGGTTTGAAATGAAAGATCACATGAGCCTTCCCCCTGTCCAGCTGCCCAGAAACTTCAGCAACCATCACTTCCATCACCACCCTCAAATCTATGGCCGCCAGTTCAAGAGAAACGCAAGAACGGTTGGTAATGTGAAAAGAAGCATCAGAGCTCCGAGAATGAGGTGGACTACAACCCTCCATGCCCATTTCGTACATGCAGTCCAGCTTCTTGGCGGCCATGAAAGAGCAACACCAAAATCTGTTTTAGAGTTGATGAATGTCAAGGATCTAACCCTTGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAATAAGGGAACAGGTCATGAAGGCCAGACAGATATGGGCTTGAACCAGAAGCCAGGGATCAATGGAGGATTATCTTGTGACAAAGCTAATAGAGGTTCGTGGCCTTCTTCATCGGAGACAAATGGCAGCTGTAACTTGAGTCCTGGAAATGCCTTGACATATTCTCATTCCCCGCAATCAAATGGCACCAAGGTGGAAGAAGAAGAATCAGGCCGCCATGTGTGTGATGATGGCGTTGGCATGAAGGAGAGGGGGACGACTTTGGCCTGTGGCTCCTTGTCAGCTTCGGACATGTACCTTAACTTAGAGTTCACGCTTGGAAGGCCAACTGCCGAATGGACTGTGCTCAATAGCCTCAACCTTCAAATGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

324

Amino Acids

35.57

Weight (kDa)

8.6

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	782
AciI	CCGC	5 cut(s)	81, 364, 483, 770, 811
AclWI	GGATC	2 cut(s)	543, 662
AcoI	YGGCCR	3 cut(s)	78, 361, 484
AcuI	CTGAAG	1 cut(s)	307
AcvI	CACGTG	1 cut(s)	553
AfaI	GTAC	5 cut(s)	5, 34, 139, 462, 893
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	888
AgsI	TTSAA	4 cut(s)	275, 373, 640, 962
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	649, 739
AleI	CACNNNNGTG	1 cut(s)	788
AluBI	AGCT	8 cut(s)	104, 150, 310, 419, 475, 683, 726, 881
AluI	AGCT	8 cut(s)	104, 150, 310, 419, 475, 683, 726, 881
Alw21I	GWGCWC	4 cut(s)	224, 421, 593, 945
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	2 cut(s)	543, 662
AoxI	GGCC	8 cut(s)	78, 361, 484, 619, 698, 808, 861, 920
ApeKI	GCWGC	3 cut(s)	168, 310, 723
AsuHPI	GGTGA	3 cut(s)	30, 89, 335
BanI	GGYRCC	1 cut(s)	782
BanII	GRGCYC	2 cut(s)	255, 421
BbrPI	CACGTG	1 cut(s)	553
Bbv12I	GWGCWC	4 cut(s)	224, 421, 593, 945
BbvI	GCAGC	3 cut(s)	180, 297, 735
BccI	CCATC	5 cut(s)	82, 216, 339, 348, 821
BciT130I	CCWGG	2 cut(s)	651, 741
BcoDI	GTCTC	1 cut(s)	707
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	1 cut(s)	30
BisI	GCNGC	7 cut(s)	81, 169, 311, 364, 484, 724, 811
BlsI	GCNGC	7 cut(s)	82, 170, 312, 365, 485, 725, 812
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	651, 741
BmiI	GGNNCC	2 cut(s)	784, 871
BmrFI	CCNGG	2 cut(s)	651, 741
BmsI	GCATC	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	233, 754
BsaAI	YACGTR	1 cut(s)	553
BsaJI	CCNNGG	2 cut(s)	650, 786
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	651, 741
BseDI	CCNNGG	2 cut(s)	650, 786
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	232
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	180, 297, 735
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	8 cut(s)	80, 363, 486, 621, 700, 810, 863, 922
BshNI	GGYRCC	1 cut(s)	782
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	4 cut(s)	224, 421, 593, 945
BsiSI	CCGG	2 cut(s)	165, 225
BslFI	GGGAC	1 cut(s)	865
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	707
BsmFI	GGGAC	1 cut(s)	865
BsnI	GGCC	8 cut(s)	80, 363, 486, 621, 700, 810, 863, 922
Bsp1286I	GDGCHC	5 cut(s)	224, 255, 421, 593, 945
Bsp143I	GATC	5 cut(s)	49, 63, 283, 535, 654
BspACI	CCGC	5 cut(s)	81, 364, 483, 770, 811
BspANI	GGCC	8 cut(s)	80, 363, 486, 621, 700, 810, 863, 922
BspHI	TCATGA	2 cut(s)	9, 613
BspLI	GGNNCC	2 cut(s)	784, 871
BspPI	GGATC	2 cut(s)	543, 662
BspQI	GCTCTTC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	782
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	650, 786
BssMI	GATC	5 cut(s)	49, 63, 283, 535, 654
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	2 cut(s)	651, 741
Bst4CI	ACNGT	4 cut(s)	137, 391, 583, 940
Bst6I	CTCTTC	2 cut(s)	551, 581
BstBAI	YACGTR	1 cut(s)	553
BstDEI	CTNAG	1 cut(s)	901
BstKTI	GATC	5 cut(s)	52, 66, 286, 538, 657
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	5 cut(s)	49, 63, 283, 535, 654
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	919
BstNI	CCWGG	2 cut(s)	651, 741
BstNSI	RCATGY	2 cut(s)	467, 892
BstSCI	CCNGG	2 cut(s)	649, 739
BstV1I	GCAGC	3 cut(s)	180, 297, 735
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	2 cut(s)	197, 479
BstYI	RGATCY	1 cut(s)	535
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	8 cut(s)	80, 363, 486, 621, 700, 810, 863, 922
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	3 cut(s)	178, 588, 591
CciI	TCATGA	2 cut(s)	9, 613
Cfr10I	RCCGGY	1 cut(s)	224
Csp6I	GTAC	5 cut(s)	4, 33, 138, 461, 892
CviQI	GTAC	5 cut(s)	4, 33, 138, 461, 892
DdeI	CTNAG	1 cut(s)	901
DpnI	GATC	5 cut(s)	51, 65, 285, 537, 656
DpnII	GATC	5 cut(s)	49, 63, 283, 535, 654
EaeI	YGGCCR	3 cut(s)	78, 361, 484
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	551, 581
EarI	CTCTTC	2 cut(s)	551, 581
Ecl136II	GAGCTC	1 cut(s)	419
EclXI	CGGCCG	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	786
Eco24I	GRGCYC	2 cut(s)	255, 421
Eco52I	CGGCCG	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	307
Eco72I	CACGTG	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	649, 739
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	2 cut(s)	255, 421
ErhI	CCWWGG	1 cut(s)	786
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	1 cut(s)	865
FauI	CCCGC	1 cut(s)	777
Fnu4HI	GCNGC	7 cut(s)	81, 169, 311, 364, 484, 724, 811
FriOI	GRGCYC	2 cut(s)	255, 421
Fsp4HI	GCNGC	7 cut(s)	81, 169, 311, 364, 484, 724, 811
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	7 cut(s)	81, 169, 311, 364, 484, 724, 811
HaeIII	GGCC	8 cut(s)	80, 363, 486, 621, 700, 810, 863, 922
HapII	CCGG	2 cut(s)	165, 225
HinfI	GANTC	4 cut(s)	161, 559, 736, 803
HpaII	CCGG	2 cut(s)	165, 225
HphI	GGTGA	3 cut(s)	30, 89, 335
Hpy166II	GTNNAC	2 cut(s)	435, 909
Hpy188I	TCNGA	4 cut(s)	416, 423, 712, 886
Hpy188III	TCNNGA	5 cut(s)	10, 120, 212, 373, 614
Hpy8I	GTNNAC	2 cut(s)	435, 909
HpyAV	CCTTC	6 cut(s)	305, 611, 711, 835, 912, 968
HpyCH4III	ACNGT	4 cut(s)	137, 391, 583, 940
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	2 cut(s)	467, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	919
HpyF3I	CTNAG	1 cut(s)	901
HpySE526I	ACGT	1 cut(s)	552
Kzo9I	GATC	5 cut(s)	49, 63, 283, 535, 654
LguI	GCTCTTC	1 cut(s)	581
LmnI	GCTCC	4 cut(s)	155, 219, 424, 875
Lsp1109I	GCAGC	3 cut(s)	180, 297, 735
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	3 cut(s)	560, 674, 728
MalI	GATC	5 cut(s)	51, 65, 285, 537, 656
MboI	GATC	5 cut(s)	49, 63, 283, 535, 654
MboII	GAAGA	7 cut(s)	231, 568, 598, 696, 806, 809, 812
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	5 cut(s)	224, 255, 421, 593, 945
MlyI	GAGTC	3 cut(s)	155, 568, 745
MseI	TTAA	2 cut(s)	897, 970
MslI	CAYNNNNRTG	3 cut(s)	195, 788, 819
MspA1I	CMGCKG	2 cut(s)	310, 726
MspI	CCGG	2 cut(s)	165, 225
MspR9I	CCNGG	2 cut(s)	651, 741
MvaI	CCWGG	2 cut(s)	651, 741
MwoI	GCNNNNNNNGC	1 cut(s)	919
NdeII	GATC	5 cut(s)	49, 63, 283, 535, 654
NlaIV	GGNNCC	2 cut(s)	784, 871
NmuCI	GTSAC	2 cut(s)	560, 674
NspI	RCATGY	2 cut(s)	467, 892
OliI	CACNNNNGTG	1 cut(s)	788
PagI	TCATGA	2 cut(s)	9, 613
PciI	ACATGT	1 cut(s)	888
PciSI	GCTCTTC	1 cut(s)	581
PfeI	GAWTC	1 cut(s)	803
PfoI	TCCNGGA	1 cut(s)	739
PkrI	GCNGC	7 cut(s)	82, 170, 312, 365, 485, 725, 812
PleI	GAGTC	3 cut(s)	155, 567, 744
PmaCI	CACGTG	1 cut(s)	553
PmlI	CACGTG	1 cut(s)	553
PpsI	GAGTC	3 cut(s)	155, 567, 744
Ppu21I	YACGTR	1 cut(s)	553
PscI	ACATGT	1 cut(s)	888
Psp124BI	GAGCTC	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	649, 739
PspCI	CACGTG	1 cut(s)	553
PspGI	CCWGG	2 cut(s)	649, 739
PspN4I	GGNNCC	2 cut(s)	784, 871
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	2 cut(s)	310, 726
RsaI	GTAC	5 cut(s)	5, 34, 139, 462, 893
RsaNI	GTAC	5 cut(s)	4, 33, 138, 461, 892
RseI	CAYNNNNRTG	3 cut(s)	195, 788, 819
SacI	GAGCTC	1 cut(s)	421
SapI	GCTCTTC	1 cut(s)	581
SaqAI	TTAA	2 cut(s)	897, 970
SatI	GCNGC	7 cut(s)	81, 169, 311, 364, 484, 724, 811
Sau3AI	GATC	5 cut(s)	49, 63, 283, 535, 654
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	3 cut(s)	155, 568, 745
ScrFI	CCNGG	2 cut(s)	651, 741
SduI	GDGCHC	5 cut(s)	224, 255, 421, 593, 945
SfaNI	GCATC	1 cut(s)	420
SmiMI	CAYNNNNRTG	3 cut(s)	195, 788, 819
SmlI	CTYRAG	2 cut(s)	212, 733
SmoI	CTYRAG	2 cut(s)	212, 733
SpeI	ACTAGT	1 cut(s)	29
SsiI	CCGC	5 cut(s)	81, 364, 483, 770, 811
SspMI	CTAG	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	2 cut(s)	649, 739
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	4 cut(s)	137, 391, 583, 940
TaiI	ACGT	1 cut(s)	555
TatI	WGTACW	2 cut(s)	32, 137
TauI	GCSGC	4 cut(s)	83, 366, 486, 813
TfiI	GAWTC	1 cut(s)	803
Tru1I	TTAA	2 cut(s)	897, 970
Tru9I	TTAA	2 cut(s)	897, 970
TscAI	CASTG	3 cut(s)	178, 588, 598
TseFI	GTSAC	2 cut(s)	560, 674
TseI	GCWGC	3 cut(s)	168, 310, 723
Tsp45I	GTSAC	2 cut(s)	560, 674
TspDTI	ATGAA	8 cut(s)	26, 207, 293, 504, 539, 630, 696, 854
TspRI	CASTG	3 cut(s)	178, 588, 598
XceI	RCATGY	2 cut(s)	467, 892
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 930
XspI	CTAG	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.