Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Forward (+)

60080187 .. 60082884

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTACCTGAGCTCAAACTCAAACCCTATAATGAGAACTACTTCTTCACCCTTGCCTGATCTCTCTTTACAGATTAGCCCACCATCAGATCACTACGAGATGGGTTTAGCAAGAAATAGTGGGAGTGATTTGACTCATTTGAGTCATGAAAATGTTCTCTTCCACTTGGATCAGAGGACAAATTATAATCTCACTTCCGCTGAGCCCGACCCAAATTTGAGTTTAGGTCTTGAAATGAAGGATATCATGAGTAGTAGTACTAGTTCAACACCTCTACTGCCAAGAAACTTCAATCATCATCATCCTCAAATCTACGGCCGAGATTTCAAAAGAAGCGCCAGAACTGTCGGGAATGTGAAAAGAAGCGTCAGAGCTCCGAGGATGCGGTGGACTACAACCCTTCATGCCCATTTCGTTCATGCAGTCCAGCTTCTCGGCGGCCATGAAAGAGCAACGCCAAAATCGGTGTTAGAGTTGATGAATGTGAAGGATCTAACTCTTGCACACGTGAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACCACAAAGGAACAGGAAACGAAGGGCAGCAGATAGATATGGGTTTGGACCAAAATCCAGGGAATAATAATGCTCAAGTAAATGGATCAGTACTACCTTGTGATTCTGAGAAAGCTATTAATTCACCTCCAACACTGCTTCTGCAAAATCCCAGCAGAGTATCATGGCACTCTGCAAGGGAGACAAATGGCAGCTGTAAACTAAGTCATGGAAATTCTTTGACGTATTCTCATTCCCCATCCTCAAATGGCACCAAGGTGGAGGAGGAGGATTCGGGTTCAGGCCGCCAGTTGGATTGTAGCTCCTTGTCATCTTCGGATCATATGTACCTTAACCTAGAGTTCACCCTTGGAAGGCCAAGTGGCGAATGGTCTATGCTCAACACCCTCAACCTTCAAATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

318

Amino Acids

35.17

Weight (kDa)

7.02

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	127 - 178	1.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	800
AciI	CCGC	4 cut(s)	198, 385, 438, 835
AclWI	GGATC	4 cut(s)	177, 498, 643, 876
AcoI	YGGCCR	2 cut(s)	316, 439
AcsI	RAATTY	2 cut(s)	214, 763
AcvI	CACGTG	1 cut(s)	508
AfaI	GTAC	4 cut(s)	5, 259, 642, 878
AfiI	CCNNNNNNNGG	2 cut(s)	841, 903
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	5 cut(s)	233, 267, 292, 328, 947
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	607
AleI	CACNNNNGTG	1 cut(s)	806
AluBI	AGCT	6 cut(s)	12, 374, 430, 665, 744, 852
AluI	AGCT	6 cut(s)	12, 374, 430, 665, 744, 852
Alw21I	GWGCWC	3 cut(s)	14, 376, 548
Alw26I	GTCTC	1 cut(s)	725
AlwI	GGATC	4 cut(s)	177, 498, 643, 876
AoxI	GGCC	4 cut(s)	316, 439, 832, 905
ApeKI	GCWGC	2 cut(s)	577, 741
ApoI	RAATTY	2 cut(s)	214, 763
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	2 cut(s)	40, 153
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	3 cut(s)	39, 666, 886
AvaII	GGWCC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	800
BanII	GRGCYC	3 cut(s)	14, 207, 376
BbrPI	CACGTG	1 cut(s)	508
Bbv12I	GWGCWC	3 cut(s)	14, 376, 548
BbvI	GCAGC	2 cut(s)	589, 753
BccI	CCATC	3 cut(s)	91, 94, 796
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	725
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	2 cut(s)	261, 887
BfoI	RGCGCY	1 cut(s)	339
BisI	GCNGC	4 cut(s)	439, 578, 742, 835
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	4 cut(s)	440, 579, 743, 836
BmcAI	AGTACT	2 cut(s)	259, 642
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	802
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	8
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	508
BsaJI	CCNNGG	4 cut(s)	377, 608, 804, 898
Bsc4I	CCNNNNNNNGG	2 cut(s)	841, 903
Bse1I	ACTGG	1 cut(s)	838
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	4 cut(s)	377, 608, 804, 898
BseGI	GGATG	3 cut(s)	301, 387, 788
BseLI	CCNNNNNNNGG	2 cut(s)	841, 903
BseMII	CTCAG	2 cut(s)	192, 648
BseNI	ACTGG	1 cut(s)	838
BseRI	GAGGAG	2 cut(s)	827, 830
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	589, 753
BseYI	CCCAGC	1 cut(s)	701
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	4 cut(s)	318, 441, 834, 907
BshNI	GGYRCC	1 cut(s)	800
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	3 cut(s)	14, 376, 548
BslI	CCNNNNNNNGG	2 cut(s)	841, 903
BsmAI	GTCTC	1 cut(s)	725
BsnI	GGCC	4 cut(s)	318, 441, 834, 907
Bsp1286I	GDGCHC	4 cut(s)	14, 207, 376, 548
Bsp143I	GATC	6 cut(s)	58, 88, 169, 490, 635, 868
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	4 cut(s)	198, 385, 438, 835
BspANI	GGCC	4 cut(s)	318, 441, 834, 907
BspCNI	CTCAG	2 cut(s)	193, 649
BspHI	TCATGA	2 cut(s)	145, 246
BspLI	GGNNCC	1 cut(s)	802
BspPI	GGATC	4 cut(s)	177, 498, 643, 876
BspQI	GCTCTTC	1 cut(s)	536
BspT107I	GGYRCC	1 cut(s)	800
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	4 cut(s)	377, 608, 804, 898
BssMI	GATC	6 cut(s)	58, 88, 169, 490, 635, 868
BssT1I	CCWWGG	2 cut(s)	804, 898
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	2 cut(s)	346, 538
Bst6I	CTCTTC	3 cut(s)	164, 506, 536
BstBAI	YACGTR	1 cut(s)	508
BstDEI	CTNAG	4 cut(s)	8, 201, 657, 752
BstF5I	GGATG	3 cut(s)	301, 387, 788
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	6 cut(s)	61, 91, 172, 493, 638, 871
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	6 cut(s)	58, 88, 169, 490, 635, 868
BstMCI	CGRYCG	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	607
BstV1I	GCAGC	2 cut(s)	589, 753
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BstZI	CGGCCG	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	318, 441, 834, 907
BtsCI	GGATG	3 cut(s)	301, 387, 788
BtsI	GCAGTG	1 cut(s)	683
BtsIMutI	CAGTG	3 cut(s)	543, 546, 683
CciI	TCATGA	2 cut(s)	145, 246
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	598
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	4 cut(s)	4, 258, 641, 877
CviAII	CATG	7 cut(s)	146, 247, 404, 419, 443, 714, 758
CviQI	GTAC	4 cut(s)	4, 258, 641, 877
DdeI	CTNAG	4 cut(s)	8, 201, 657, 752
DpnI	GATC	6 cut(s)	60, 90, 171, 492, 637, 870
DpnII	GATC	6 cut(s)	58, 88, 169, 490, 635, 868
EaeI	YGGCCR	2 cut(s)	316, 439
EagI	CGGCCG	1 cut(s)	316
Eam1104I	CTCTTC	3 cut(s)	164, 506, 536
EarI	CTCTTC	3 cut(s)	164, 506, 536
Ecl136II	GAGCTC	2 cut(s)	12, 374
EclXI	CGGCCG	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	804, 898
Eco24I	GRGCYC	3 cut(s)	14, 207, 376
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	598
Eco52I	CGGCCG	1 cut(s)	316
Eco53kI	GAGCTC	2 cut(s)	12, 374
Eco72I	CACGTG	1 cut(s)	508
EcoICRI	GAGCTC	2 cut(s)	12, 374
EcoRII	CCWGG	1 cut(s)	607
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	804, 898
EcoT38I	GRGCYC	3 cut(s)	14, 207, 376
ErhI	CCWWGG	2 cut(s)	804, 898
FaeI	CATG	7 cut(s)	149, 250, 407, 422, 446, 717, 761
FatI	CATG	7 cut(s)	145, 246, 403, 418, 442, 713, 757
FauNDI	CATATG	1 cut(s)	873
Fnu4HI	GCNGC	4 cut(s)	439, 578, 742, 835
FokI	GGATG	3 cut(s)	288, 394, 775
FriOI	GRGCYC	3 cut(s)	14, 207, 376
Fsp4HI	GCNGC	4 cut(s)	439, 578, 742, 835
FspBI	CTAG	2 cut(s)	261, 887
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	4 cut(s)	439, 578, 742, 835
GsaI	CCCAGC	1 cut(s)	705
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	4 cut(s)	318, 441, 834, 907
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	7 cut(s)	149, 250, 407, 422, 446, 717, 761
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	5 cut(s)	133, 142, 514, 653, 821
HphI	GGTGA	3 cut(s)	39, 666, 886
Hpy166II	GTNNAC	3 cut(s)	390, 749, 894
Hpy188I	TCNGA	6 cut(s)	88, 174, 371, 378, 658, 868
Hpy188III	TCNNGA	4 cut(s)	146, 230, 247, 349
Hpy8I	GTNNAC	3 cut(s)	390, 749, 894
HpyAV	CCTTC	6 cut(s)	232, 410, 481, 566, 897, 953
HpyCH4III	ACNGT	2 cut(s)	346, 538
HpyCH4IV	ACGT	2 cut(s)	507, 773
HpyCH4V	TGCA	5 cut(s)	422, 503, 523, 694, 725
HpyF3I	CTNAG	4 cut(s)	8, 201, 657, 752
HpySE526I	ACGT	2 cut(s)	507, 773
Hsp92II	CATG	7 cut(s)	149, 250, 407, 422, 446, 717, 761
HspAI	GCGC	1 cut(s)	336
Kzo9I	GATC	6 cut(s)	58, 88, 169, 490, 635, 868
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	2 cut(s)	379, 857
Lsp1109I	GCAGC	2 cut(s)	589, 753
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	2 cut(s)	261, 887
MaeII	ACGT	2 cut(s)	507, 773
MalI	GATC	6 cut(s)	60, 90, 171, 492, 637, 870
MboI	GATC	6 cut(s)	58, 88, 169, 490, 635, 868
MboII	GAAGA	5 cut(s)	36, 151, 523, 553, 855
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	4 cut(s)	14, 207, 376, 548
MluCI	AATT	4 cut(s)	181, 214, 670, 763
MlyI	GAGTC	3 cut(s)	127, 151, 523
MmeI	TCCRAC	2 cut(s)	704, 822
MroXI	GAANNNNTTC	2 cut(s)	40, 153
MseI	TTAA	2 cut(s)	669, 882
MslI	CAYNNNNRTG	2 cut(s)	150, 806
MspA1I	CMGCKG	2 cut(s)	200, 744
MspR9I	CCNGG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	609
NdeI	CATATG	1 cut(s)	873
NdeII	GATC	6 cut(s)	58, 88, 169, 490, 635, 868
NlaIII	CATG	7 cut(s)	149, 250, 407, 422, 446, 717, 761
NlaIV	GGNNCC	1 cut(s)	802
NmeAIII	GCCGAG	2 cut(s)	344, 414
OliI	CACNNNNGTG	1 cut(s)	806
PagI	TCATGA	2 cut(s)	145, 246
PciSI	GCTCTTC	1 cut(s)	536
PdmI	GAANNNNTTC	2 cut(s)	40, 153
PfeI	GAWTC	2 cut(s)	653, 821
PkrI	GCNGC	4 cut(s)	440, 579, 743, 836
PleI	GAGTC	3 cut(s)	127, 150, 522
PmaCI	CACGTG	1 cut(s)	508
PmlI	CACGTG	1 cut(s)	508
PpsI	GAGTC	3 cut(s)	127, 150, 522
Ppu21I	YACGTR	1 cut(s)	508
PshBI	ATTAAT	1 cut(s)	669
PsiI	TTATAA	1 cut(s)	186
Psp124BI	GAGCTC	2 cut(s)	14, 376
Psp6I	CCWGG	1 cut(s)	607
PspCI	CACGTG	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	1 cut(s)	802
PspPI	GGNCC	1 cut(s)	598
PsrI	GAACNNNNNNTAC	2 cut(s)	247, 279
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	744
RsaI	GTAC	4 cut(s)	5, 259, 642, 878
RsaNI	GTAC	4 cut(s)	4, 258, 641, 877
RseI	CAYNNNNRTG	2 cut(s)	150, 806
SacI	GAGCTC	2 cut(s)	14, 376
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	2 cut(s)	669, 882
SatI	GCNGC	4 cut(s)	439, 578, 742, 835
Sau3AI	GATC	6 cut(s)	58, 88, 169, 490, 635, 868
Sau96I	GGNCC	1 cut(s)	598
ScaI	AGTACT	2 cut(s)	259, 642
SchI	GAGTC	3 cut(s)	127, 151, 523
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	4 cut(s)	14, 207, 376, 548
SfaNI	GCATC	1 cut(s)	372
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	2 cut(s)	150, 806
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	4 cut(s)	181, 214, 670, 763
SsiI	CCGC	4 cut(s)	198, 385, 438, 835
SspMI	CTAG	2 cut(s)	261, 887
SstI	GAGCTC	2 cut(s)	14, 376
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	2 cut(s)	804, 898
TaaI	ACNGT	2 cut(s)	346, 538
TaiI	ACGT	2 cut(s)	510, 776
TasI	AATT	4 cut(s)	181, 214, 670, 763
TatI	WGTACW	2 cut(s)	257, 640
TauI	GCSGC	2 cut(s)	441, 837
TfiI	GAWTC	2 cut(s)	653, 821
Tru1I	TTAA	2 cut(s)	669, 882
Tru9I	TTAA	2 cut(s)	669, 882
TscAI	CASTG	3 cut(s)	543, 553, 690
TseI	GCWGC	2 cut(s)	577, 741
TspDTI	ATGAA	6 cut(s)	162, 251, 392, 407, 459, 494
TspRI	CASTG	3 cut(s)	543, 553, 690
VpaK11BI	GGWCC	1 cut(s)	598
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	2 cut(s)	214, 763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	915
XmnI	GAANNNNTTC	2 cut(s)	40, 153
XspI	CTAG	2 cut(s)	261, 887
ZrmI	AGTACT	2 cut(s)	259, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.