AT5G42700

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002837
Physical Location & Seq
Forward (+)
17122102 .. 17124441
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42700.1

Sequence Viewer

Length: 696 bp
ATGGTGGTCGAAAAACAAACAAAGTACGAAGAATTTCGTTTGAAAAGAGTGGAAGAGAACAAGAAACGAATGGAAGCTCTGAATCTTCCAAAACTCTCTCAAATTCTCAATTCCACTTCCGTCAAGATTTCTCCGATGAAGAAGAGATCTATTCCTCGAACACCAGAGAAGAAGATGGTGATTGTTCGTAGATCTAGCCGTATCTCTAATTCTTCTTCTGTTCCGGTTTACAGAGAAGTTGATGTTAAACGAGTGCACATACAGAGAAGGGGAGTGGGCAAGAAGAGAGATTTATTGAATCGAGTTTATGTTTCTGAAGAAATCAGAGATGAGGCCATTTCAAGAGCTAACAAATTTCAGGATGAATTGGGGAGTGGTTATCCAAGTTTTGTGAAATCTATGCTTCAATCACATGTTTCTGGTGGCTTCTGGCTGGGTCTTCCAGTGCAATTTTGCAAATCTCACCTCGGGTTACATGATGGTGTCATAACTTTGATAGATGAAGAAGGCGAGGAGTATGAGACTATCTACTTAGCGAGAAAGAATGGACTTAGTGGTGGATGGATGGGATTTGCGGTTGCTCACAATCTAGCATATGGGGATACTCTTGTTTTCGAGTTAGTTCGTCGTACCGCTTTCAAGGTTTACATTACAAGAGTTGGAAGTTGTGGAGAAAGCTCCAAAGATATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

231

Amino Acids

26.33

Weight (kDa)

9.76

Isoelectric Point (pI)

59.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 130 - 218 3.7e-16 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 575, 633
AcsI RAATTY 3 cut(s) 32, 102, 353
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 2 cut(s) 26, 631
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 5 cut(s) 43, 298, 342, 407, 640
AluBI AGCT 4 cut(s) 77, 347, 678, 693
AluI AGCT 4 cut(s) 77, 347, 678, 693
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 515
Alw44I GTGCAC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 1 cut(s) 333
ApaLI GTGCAC 1 cut(s) 254
ApoI RAATTY 3 cut(s) 32, 102, 353
Asp700I GAANNNNTTC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 190, 455
AvaI CYCGRG 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 258
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 258
BccI CCATC 4 cut(s) 169, 473, 555, 559
BceAI ACGGC 1 cut(s) 183
BciVI GTATCC 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 515
BfaI CTAG 2 cut(s) 195, 590
BfuI GTATCC 1 cut(s) 595
BglII AGATCT 2 cut(s) 146, 191
BmeT110I CYCGRG 1 cut(s) 467
BpiI GAAGAC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 466
BsaWI WCCGGW 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 443
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 3 cut(s) 367, 566, 570
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 527
BseSI GKGCMC 1 cut(s) 258
BseYI CCCAGC 1 cut(s) 433
BshFI GGCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 467
BsiSI CCGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 515
BsnI GGCC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 146, 191
BspACI CCGC 2 cut(s) 575, 633
BspANI GGCC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 2 cut(s) 146, 191
Bst6I CTCTTC 3 cut(s) 48, 137, 278
BstDEI CTNAG 2 cut(s) 532, 551
BstF5I GGATG 3 cut(s) 367, 566, 570
BstKTI GATC 2 cut(s) 149, 194
BstMAI GTCTC 1 cut(s) 515
BstMBI GATC 2 cut(s) 146, 191
BstNSI RCATGY 1 cut(s) 416
BstSLI GKGCMC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 2 cut(s) 146, 191
BstYI RGATCY 2 cut(s) 146, 191
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 3 cut(s) 367, 566, 570
BtsIMutI CAGTG 1 cut(s) 450
Csp6I GTAC 2 cut(s) 25, 630
CviAII CATG 2 cut(s) 413, 476
CviJI RGCY 8 cut(s) 77, 198, 335, 347, 426, 433, 678, 693
CviKI_1 RGCY 8 cut(s) 77, 198, 335, 347, 426, 433, 678, 693
CviQI GTAC 2 cut(s) 25, 630
DdeI CTNAG 2 cut(s) 532, 551
DpnI GATC 2 cut(s) 148, 193
DpnII GATC 2 cut(s) 146, 191
Eam1104I CTCTTC 3 cut(s) 48, 137, 278
EarI CTCTTC 3 cut(s) 48, 137, 278
Eco57I CTGAAG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 467
FaeI CATG 2 cut(s) 416, 479
FatI CATG 2 cut(s) 412, 475
FauNDI CATATG 1 cut(s) 595
FokI GGATG 3 cut(s) 374, 573, 577
FspBI CTAG 2 cut(s) 195, 590
GsaI CCCAGC 1 cut(s) 437
HaeIII GGCC 1 cut(s) 335
HapII CCGG 1 cut(s) 224
Hin1II CATG 2 cut(s) 416, 479
HinfI GANTC 2 cut(s) 82, 298
HpaII CCGG 1 cut(s) 224
HphI GGTGA 2 cut(s) 190, 455
Hpy166II GTNNAC 3 cut(s) 229, 256, 646
Hpy188I TCNGA 4 cut(s) 81, 135, 316, 326
Hpy188III TCNNGA 3 cut(s) 124, 342, 359
Hpy8I GTNNAC 3 cut(s) 229, 256, 646
Hpy99I CGWCG 1 cut(s) 630
HpyAV CCTTC 2 cut(s) 261, 500
HpyCH4V TGCA 3 cut(s) 256, 448, 456
HpyF3I CTNAG 2 cut(s) 532, 551
Hsp92II CATG 2 cut(s) 416, 479
Kzo9I GATC 2 cut(s) 146, 191
LmnI GCTCC 1 cut(s) 683
LpnPI CCDG 7 cut(s) 177, 237, 344, 405, 415, 419, 456
MaeI CTAG 2 cut(s) 195, 590
MaeIII GTNAC 1 cut(s) 471
MalI GATC 2 cut(s) 148, 193
MboI GATC 2 cut(s) 146, 191
MflI RGATCY 2 cut(s) 146, 191
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 7 cut(s) 32, 102, 109, 208, 353, 365, 449
MmeI TCCRAC 1 cut(s) 640
MnlI CCTC 4 cut(s) 165, 325, 476, 505
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 1 cut(s) 224
NdeI CATATG 1 cut(s) 595
NdeII GATC 2 cut(s) 146, 191
NlaIII CATG 2 cut(s) 416, 479
NspI RCATGY 1 cut(s) 416
PciI ACATGT 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 82, 298
PscI ACATGT 1 cut(s) 412
PspFI CCCAGC 1 cut(s) 433
PsuI RGATCY 2 cut(s) 146, 191
RsaI GTAC 2 cut(s) 26, 631
RsaNI GTAC 2 cut(s) 25, 630
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 1 cut(s) 246
Sau3AI GATC 2 cut(s) 146, 191
SduI GDGCHC 1 cut(s) 258
SetI ASST 6 cut(s) 79, 349, 468, 645, 680, 695
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 7 cut(s) 32, 102, 109, 208, 353, 365, 449
SsiI CCGC 2 cut(s) 575, 633
SspMI CTAG 2 cut(s) 195, 590
TaqI TCGA 4 cut(s) 9, 157, 301, 615
TasI AATT 7 cut(s) 32, 102, 109, 208, 353, 365, 449
TfiI GAWTC 2 cut(s) 82, 298
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 450
TspDTI ATGAA 3 cut(s) 152, 378, 516
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 1 cut(s) 450
VneI GTGCAC 1 cut(s) 254
XapI RAATTY 3 cut(s) 32, 102, 353
XceI RCATGY 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 2 cut(s) 195, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.