Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002837

Physical Location & Seq

Genomic Coordinates Reverse (-)

37292226 .. 37294377

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G438000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTGGCCGCCAATTTATCATACGAGGAGTCTCGACGGCAGAGGATGGAGGAAAACAAGAAGAGAATGGAGGCACTGAATCTGCCCCAGCTTGCTCAGGCTCTAAAAGCCCCATCCTTTCCTAAACCCTCTCCTATGAAGCGAGCAAAGCCTCGGACAGTCGAGAAGCAGATGGTTGTGGTGAGGAGGTCCTCTCGCGTCGCAAACCTGCCTACCCCTGTTTACAAAGAAATTGCTGTGGATCCATTGAGAATGCCCAGAAGGCATTCTACTTCGAAGCATAGGGATTTTTCGAACCGGGTATATGCTTCAGATGAAGCAAGAGCTGAGGCGACAGAGAGAGCCGAGGAATTAGAGTCGGGTTTGGGATCCGATCACCCGACCTTTGTGAAACCCATGCTCCAATCACATGTCACTGGTGGATTCTGGCTGGGTCTTCCAATCCATTTCTGCAACAAGAACCTCCCAAAGCGCGATGAATCTGTGATATTGGTAGATGAAGATGGCGACGAGTACCAGATTGTATACTTGGCCAATAAACGAGGACTCAGTGGTGGGTGGAGAGGGTTTGCAATTGCTCATGAATTGGTGGATGGGGATGCATTGGTTTTTCAACTAATCCGGCCTAAAACATTCAAGGTGTACATTATAAGGGTGGAAAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

223

Amino Acids

25.35

Weight (kDa)

9.7

Isoelectric Point (pI)

56.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42700 AT5G42700
fragaria_vesca	FvH4_2g34580 FvH4_2g34580 FvH4_2g34580 FvH4_2g34580 FvH4_2g34591 FvH4_2g34591
malus_domestica	MD08G1102800.v1.1 MD08G1102900.v1.1 MD15G1084300.v1.1 MD15G1084400.v1.1
prunus_persica	Prupe.1G437900_v2.0.a1 Prupe.1G438000_v2.0.a1
pyrus_communis	pycom08g08430 pycom15g07970
rosa_chinensis	RchiOBHm_Chr6g0307571 RchiOBHm_Chr6g0307581 RchiOBHm_Chr6g0307721 RchiOBHm_Chr6g0307731
rosa_laevigata	RLG00000010704 RLG00000010705
rosa_multiflora	Rmu_sc0022525.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160930 Rroxscaffold_7G00160940
rosa_rugosa	Rorug06G0359900 Rorug06G0360000 Rorug06G0360000 Rorug06G0360000
rosa_samantha	Rh6AG469300 Rh6AG469400 Rh6BG479900 Rh6BG480000 Rh6CG485500 Rh6CG485700 Rh6DG472100 Rh6DG472200
rosa_wichuraiana	Rw6G040980 Rw6G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	650
Acc36I	ACCTGC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	525
AccII	CGCG	2 cut(s)	198, 474
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	4 cut(s)	236, 249, 363, 376
AcoI	YGGCCR	2 cut(s)	6, 531
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	515, 644
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	614, 637
AluBI	AGCT	2 cut(s)	91, 326
AluI	AGCT	2 cut(s)	91, 326
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	4 cut(s)	236, 249, 363, 376
AoxI	GGCC	3 cut(s)	6, 531, 623
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	193, 368
AsuII	TTCGAA	2 cut(s)	275, 293
AvaII	GGWCC	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	533
BamHI	GGATCC	2 cut(s)	241, 368
BarI	GAAGNNNNNNTAC	2 cut(s)	253, 285
BbsI	GAAGAC	1 cut(s)	428
BbvCI	CCTCAGC	1 cut(s)	327
BccI	CCATC	5 cut(s)	40, 121, 166, 497, 587
BceAI	ACGGC	1 cut(s)	53
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	2 cut(s)	243, 370
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	428
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
Bpu10I	CCTNAGC	2 cut(s)	96, 327
Bpu14I	TTCGAA	2 cut(s)	275, 293
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	152, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bse1I	ACTGG	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	152, 345
BseGI	GGATG	4 cut(s)	51, 113, 598, 604
BseMII	CTCAG	3 cut(s)	110, 318, 562
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	2 cut(s)	41, 199
BseYI	CCCAGC	2 cut(s)	87, 430
Bsh1236I	CGCG	2 cut(s)	198, 474
BshFI	GGCC	3 cut(s)	8, 533, 625
BsiSI	CCGG	2 cut(s)	298, 622
BsmAI	GTCTC	1 cut(s)	36
BsmI	GAATGC	2 cut(s)	258, 265
BsnI	GGCC	3 cut(s)	8, 533, 625
Bsp119I	TTCGAA	2 cut(s)	275, 293
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	3 cut(s)	241, 368, 373
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	3 cut(s)	8, 533, 625
BspCNI	CTCAG	3 cut(s)	109, 319, 561
BspFNI	CGCG	2 cut(s)	198, 474
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	243, 370
BspMI	ACCTGC	1 cut(s)	216
BspPI	GGATC	4 cut(s)	236, 249, 363, 376
BspT104I	TTCGAA	2 cut(s)	275, 293
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	152, 345
BssMI	GATC	3 cut(s)	241, 368, 373
BssNAI	GTATAC	1 cut(s)	526
Bst1107I	GTATAC	1 cut(s)	526
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	56
BstAUI	TGTACA	1 cut(s)	642
BstBI	TTCGAA	2 cut(s)	275, 293
BstC8I	GCNNGC	2 cut(s)	93, 144
BstDEI	CTNAG	3 cut(s)	96, 327, 548
BstF5I	GGATG	4 cut(s)	51, 113, 598, 604
BstFNI	CGCG	2 cut(s)	198, 474
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	3 cut(s)	244, 371, 376
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	3 cut(s)	241, 368, 373
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 148, 262
BstNSI	RCATGY	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	198, 474
BstV2I	GAAGAC	1 cut(s)	428
BstX2I	RGATCY	2 cut(s)	241, 368
BstYI	RGATCY	2 cut(s)	241, 368
BstZ17I	GTATAC	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	8, 533, 625
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	4 cut(s)	51, 113, 598, 604
BtsIMutI	CAGTG	3 cut(s)	74, 414, 556
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	93, 144
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	189
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	514, 643
CviAII	CATG	3 cut(s)	397, 410, 581
CviQI	GTAC	2 cut(s)	514, 643
DdeI	CTNAG	3 cut(s)	96, 327, 548
DpnI	GATC	3 cut(s)	243, 370, 375
DpnII	GATC	3 cut(s)	241, 368, 373
EaeI	YGGCCR	2 cut(s)	6, 531
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	604
FaeI	CATG	3 cut(s)	400, 413, 584
FatI	CATG	3 cut(s)	396, 409, 580
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	4 cut(s)	58, 100, 605, 611
Fsp4HI	GCNGC	1 cut(s)	9
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	1 cut(s)	9
GsaI	CCCAGC	2 cut(s)	91, 434
HaeIII	GGCC	3 cut(s)	8, 533, 625
HapII	CCGG	2 cut(s)	298, 622
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	3 cut(s)	400, 413, 584
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	6 cut(s)	29, 79, 356, 423, 479, 546
HpaII	CCGG	2 cut(s)	298, 622
HphI	GGTGA	2 cut(s)	193, 368
Hpy166II	GTNNAC	3 cut(s)	223, 526, 643
Hpy188I	TCNGA	3 cut(s)	156, 313, 373
Hpy188III	TCNNGA	3 cut(s)	33, 163, 581
Hpy8I	GTNNAC	3 cut(s)	223, 526, 643
Hpy99I	CGWCG	3 cut(s)	39, 203, 512
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	453, 572, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 148, 262
HpyF3I	CTNAG	3 cut(s)	96, 327, 548
Hsp92II	CATG	3 cut(s)	400, 413, 584
HspAI	GCGC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	241, 368, 373
LmnI	GCTCC	1 cut(s)	405
LweI	GCATC	1 cut(s)	589
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	243, 370, 375
MboI	GATC	3 cut(s)	241, 368, 373
MboII	GAAGA	3 cut(s)	73, 428, 512
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	2 cut(s)	241, 368
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	5 cut(s)	13, 231, 350, 573, 584
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	3 cut(s)	38, 365, 540
Mox20I	TGGCCA	1 cut(s)	533
Mph1103I	ATGCAT	1 cut(s)	604
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	1 cut(s)	667
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	2 cut(s)	298, 622
MspR9I	CCNGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	2 cut(s)	258, 265
MvnI	CGCG	2 cut(s)	198, 474
MwoI	GCNNNNNNNGC	3 cut(s)	107, 148, 262
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	241, 368, 373
NlaIII	CATG	3 cut(s)	400, 413, 584
NlaIV	GGNNCC	2 cut(s)	243, 370
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	1 cut(s)	413
NspV	TTCGAA	2 cut(s)	275, 293
PagI	TCATGA	1 cut(s)	580
PciI	ACATGT	1 cut(s)	409
PctI	GAATGC	2 cut(s)	258, 265
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	79, 423, 479
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	3 cut(s)	37, 364, 540
PpsI	GAGTC	3 cut(s)	37, 364, 540
PpuMI	RGGWCCY	1 cut(s)	189
PscI	ACATGT	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	650
Psp5II	RGGWCCY	1 cut(s)	189
PspFI	CCCAGC	2 cut(s)	87, 430
PspN4I	GGNNCC	2 cut(s)	243, 370
PspPI	GGNCC	1 cut(s)	189
PspPPI	RGGWCCY	1 cut(s)	189
PsuI	RGATCY	2 cut(s)	241, 368
RsaI	GTAC	2 cut(s)	515, 644
RsaNI	GTAC	2 cut(s)	514, 643
SaqAI	TTAA	1 cut(s)	667
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	3 cut(s)	241, 368, 373
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	3 cut(s)	38, 365, 540
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	7 cut(s)	93, 191, 210, 328, 386, 465, 642
SfaNI	GCATC	1 cut(s)	589
SfuI	TTCGAA	2 cut(s)	275, 293
SinI	GGWCC	1 cut(s)	189
Sse9I	AATT	5 cut(s)	13, 231, 350, 573, 584
SsiI	CCGC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	4 cut(s)	34, 162, 275, 293
TasI	AATT	5 cut(s)	13, 231, 350, 573, 584
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	79, 423, 479
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TscAI	CASTG	3 cut(s)	81, 421, 556
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	5 cut(s)	152, 330, 492, 513, 597
TspRI	CASTG	3 cut(s)	81, 421, 556
VpaK11BI	GGWCC	1 cut(s)	189
XceI	RCATGY	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	265
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.