Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002837

Physical Location & Seq

Genomic Coordinates Reverse (-)

50853157 .. 50854156

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0359900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGATCCTCCTCCTCCCACTCTTCCGATGCCTCCAACTCCTCCTTCCACTCTTCCTCATCCCAGTACTCTTCCTCCTCCTCCTCTGACTCCAAAATCGTTTGTGAAAAGCCTGAAAGGGAAAGACCTCCGTTACCATGTGCTGACAAGCATTAAAAGAAGGTTCCTACAGGCTCCGGAAGAGGACAGCAGCCTTGATAAGCTTCCTCCTTTGGCAGACAGCAAACCTGATGATTTGCGAAGACAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

83

Amino Acids

9.25

Weight (kDa)

9.16

Isoelectric Point (pI)

88.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42700 AT5G42700
fragaria_vesca	FvH4_2g34580 FvH4_2g34580 FvH4_2g34580 FvH4_2g34580 FvH4_2g34591 FvH4_2g34591
malus_domestica	MD08G1102800.v1.1 MD08G1102900.v1.1 MD15G1084300.v1.1 MD15G1084400.v1.1
prunus_persica	Prupe.1G437900_v2.0.a1 Prupe.1G438000_v2.0.a1
pyrus_communis	pycom08g08430 pycom15g07970
rosa_chinensis	RchiOBHm_Chr6g0307571 RchiOBHm_Chr6g0307581 RchiOBHm_Chr6g0307721 RchiOBHm_Chr6g0307731
rosa_laevigata	RLG00000010704 RLG00000010705
rosa_multiflora	Rmu_sc0022525.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160930 Rroxscaffold_7G00160940
rosa_rugosa	Rorug06G0359900 Rorug06G0360000 Rorug06G0360000 Rorug06G0360000
rosa_samantha	Rh6AG469300 Rh6AG469400 Rh6BG479900 Rh6BG480000 Rh6CG485500 Rh6CG485700 Rh6DG472100 Rh6DG472200
rosa_wichuraiana	Rw6G040980 Rw6G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	175
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	189
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
BmcAI	AGTACT	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	6, 164, 174
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	18
BmuI	ACTGGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bse1I	ACTGG	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	175
BseGI	GGATG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	4 cut(s)	30, 66, 69, 72
BseXI	GCAGC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	176
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	4
BspEI	TCCGGA	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	6, 164, 174
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	4
Bst6I	CTCTTC	4 cut(s)	27, 57, 75, 174
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	4 cut(s)	111, 173, 192, 202
CviKI_1	RGCY	4 cut(s)	111, 173, 192, 202
CviQI	GTAC	1 cut(s)	66
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	4 cut(s)	27, 57, 75, 174
EarI	CTCTTC	4 cut(s)	27, 57, 75, 174
FaeI	CATG	1 cut(s)	140
FaiI	YATR	1 cut(s)	138
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	190
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	1 cut(s)	140
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	27, 87
Hpy188III	TCNNGA	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	54, 153
Hsp92II	CATG	1 cut(s)	140
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	76, 125, 155, 189, 230, 240
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	5 cut(s)	14, 44, 62, 191, 252
MflI	RGATCY	1 cut(s)	4
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	59
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	1 cut(s)	153
MspI	CCGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	3 cut(s)	6, 164, 174
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PspN4I	GGNNCC	3 cut(s)	6, 164, 174
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	1 cut(s)	82
SetI	ASST	4 cut(s)	129, 164, 204, 229
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	167
SgeI	CNNG	8 cut(s)	75, 124, 149, 159, 182, 188, 206, 239
TatI	WGTACW	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	119
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.