Rh6BG479900

B3 domain-containing protein At3g19184-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002837
Physical Location & Seq
Forward (+)
68614953 .. 68616552
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG479900.1

Sequence Viewer

Length: 663 bp
ATGGCCAAGCCAAAAACATCCTACGAGGAAACCCGAAAGCAGAGAATGGAAGAAAACAGGAAGAGAATGGAAGCCCTCAATCTGCCTCAGCTGGCTCAGGCTTTTCGAACCTCTTCGTCTCCCAAACCTTCTCCGATGAAGCGCCAGAAGCCTCGTAAATTGGAGAAGCAGATTGTTGAGGTGAGGAGATCGGCTCGCGTTGCAAGGCAGCCTACCCCTGTTTACAGAGAAGTTGAGGTGAAGGTACCAAGAAGCTATGGGAGGATTTCTAAGCATAGGGATTTGTCCAACCGGGTATATGCTAGTGAGTACGCCAGAGCTGAGGCAACAGAGAAAGCTGAGGAATTGGAGTCCGGCTTGGGATCCGATTACCCGACCTTTGTGAAACCAATGCTCCAATCCCATGTCACTGGTGGATTCTGGCTGGGTCTTCCACTCCCTTTCTGCAGGAAGTACCTCCCCAAACGCGATGCAGCTGTGATGCTGGTAGATGAAGAAGGTGAGGAGTACCCGATTGTATACTTGGGGAACAAAAATGGACTTAGCGGTGGATGGAGAGGATTTTCGATTGCCCATGAGTTGGTGGACGGTGATGCATTGGTATTTCAGTTAATCAAGCCTACGACATTCAAGGTGTACATCATAAGGGTAGAAAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

220

Amino Acids

25.2

Weight (kDa)

9.75

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 127 - 216 4.9e-17 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 244
AccB1I GGYRCC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 580
AccI GTMKAC 1 cut(s) 519
AccII CGCG 2 cut(s) 198, 468
AciI CCGC 1 cut(s) 546
AclWI GGATC 2 cut(s) 357, 370
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 5 cut(s) 246, 311, 455, 509, 638
AfiI CCNNNNNNNGG 1 cut(s) 580
AgsI TTSAA 1 cut(s) 631
AluBI AGCT 6 cut(s) 91, 255, 320, 338, 476, 657
AluI AGCT 6 cut(s) 91, 255, 320, 338, 476, 657
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 2 cut(s) 357, 370
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 208, 473
Asp700I GAANNNNTTC 1 cut(s) 112
Asp718I GGTACC 1 cut(s) 244
AspLEI GCGC 1 cut(s) 144
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 4 cut(s) 193, 250, 512, 602
AsuII TTCGAA 1 cut(s) 106
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 422
BbvCI CCTCAGC 3 cut(s) 87, 321, 339
BbvI GCAGC 2 cut(s) 220, 485
BccI CCATC 1 cut(s) 546
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 445
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 2 cut(s) 209, 474
BlsI GCNGC 2 cut(s) 210, 475
Bme1390I CCNGG 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 246, 364
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 3 cut(s) 460, 471, 583
BpiI GAAGAC 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 178, 210
Bpu10I CCTNAGC 4 cut(s) 87, 96, 321, 339
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 1 cut(s) 580
Bse1I ACTGG 1 cut(s) 415
BseGI GGATG 2 cut(s) 17, 557
BseLI CCNNNNNNNGG 1 cut(s) 580
BseMII CTCAG 4 cut(s) 101, 110, 312, 330
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 2 cut(s) 199, 518
BseXI GCAGC 2 cut(s) 220, 485
BseYI CCCAGC 1 cut(s) 424
Bsh1236I CGCG 2 cut(s) 198, 468
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 292, 354
BslI CCNNNNNNNGG 1 cut(s) 580
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 106
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 2 cut(s) 188, 362
BspACI CCGC 1 cut(s) 546
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 100, 109, 313, 331
BspFNI CGCG 2 cut(s) 198, 468
BspLI GGNNCC 2 cut(s) 246, 364
BspMAI CTGCAG 1 cut(s) 449
BspPI GGATC 2 cut(s) 357, 370
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 415
BssMI GATC 2 cut(s) 188, 362
BssNAI GTATAC 1 cut(s) 520
Bst1107I GTATAC 1 cut(s) 520
Bst4CI ACNGT 1 cut(s) 590
Bst6I CTCTTC 2 cut(s) 56, 118
BstAUI TGTACA 1 cut(s) 636
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 93, 196
BstDEI CTNAG 6 cut(s) 87, 96, 270, 321, 339, 542
BstF5I GGATG 2 cut(s) 17, 557
BstFNI CGCG 2 cut(s) 198, 468
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 2 cut(s) 191, 365
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 188, 362
BstMWI GCNNNNNNNGC 2 cut(s) 148, 200
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 445
BstUI CGCG 2 cut(s) 198, 468
BstV1I GCAGC 2 cut(s) 220, 485
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 410
BstYI RGATCY 1 cut(s) 362
BstZ17I GTATAC 1 cut(s) 520
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 483
BtsCI GGATG 2 cut(s) 17, 557
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 93, 196
CfoI GCGC 1 cut(s) 144
Csp6I GTAC 5 cut(s) 245, 310, 454, 508, 637
CviAII CATG 2 cut(s) 404, 575
CviQI GTAC 5 cut(s) 245, 310, 454, 508, 637
DdeI CTNAG 6 cut(s) 87, 96, 270, 321, 339, 542
DpnI GATC 2 cut(s) 190, 364
DpnII GATC 2 cut(s) 188, 362
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 56, 118
EarI CTCTTC 2 cut(s) 56, 118
EcoT22I ATGCAT 1 cut(s) 598
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 407, 578
FaiI YATR 8 cut(s) 258, 276, 298, 300, 405, 520, 576, 644
FatI CATG 2 cut(s) 403, 574
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 2 cut(s) 209, 474
FokI GGATG 2 cut(s) 4, 564
Fsp4HI GCNGC 2 cut(s) 209, 474
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 143
GluI GCNGC 2 cut(s) 209, 474
GsaI CCCAGC 1 cut(s) 428
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 292, 354
HhaI GCGC 1 cut(s) 144
Hin1II CATG 2 cut(s) 407, 578
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 2 cut(s) 350, 417
HpaII CCGG 2 cut(s) 292, 354
HphI GGTGA 4 cut(s) 193, 250, 512, 602
Hpy166II GTNNAC 4 cut(s) 223, 520, 586, 637
Hpy188I TCNGA 2 cut(s) 135, 367
Hpy8I GTNNAC 4 cut(s) 223, 520, 586, 637
HpyAV CCTTC 3 cut(s) 138, 235, 491
HpyCH4III ACNGT 1 cut(s) 590
HpyCH4V TGCA 4 cut(s) 203, 447, 473, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 200
HpyF3I CTNAG 6 cut(s) 87, 96, 270, 321, 339, 542
Hsp92II CATG 2 cut(s) 407, 578
HspAI GCGC 1 cut(s) 142
KpnI GGTACC 1 cut(s) 248
Kzo9I GATC 2 cut(s) 188, 362
LmnI GCTCC 1 cut(s) 399
Lsp1109I GCAGC 2 cut(s) 220, 485
LweI GCATC 3 cut(s) 460, 471, 583
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 406
MalI GATC 2 cut(s) 190, 364
MboI GATC 2 cut(s) 188, 362
MboII GAAGA 5 cut(s) 62, 73, 105, 422, 506
MflI RGATCY 1 cut(s) 362
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 158, 344
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 312
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 598
MroXI GAANNNNTTC 1 cut(s) 112
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 611, 661
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 91, 476
MspI CCGG 2 cut(s) 292, 354
MspR9I CCNGG 1 cut(s) 293
MvnI CGCG 2 cut(s) 198, 468
MwoI GCNNNNNNNGC 2 cut(s) 148, 200
NciI CCSGG 1 cut(s) 293
NdeII GATC 2 cut(s) 188, 362
NlaIII CATG 2 cut(s) 407, 578
NlaIV GGNNCC 2 cut(s) 246, 364
NmuCI GTSAC 1 cut(s) 406
NsiI ATGCAT 1 cut(s) 598
NspV TTCGAA 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 417
PflMI CCANNNNNTGG 1 cut(s) 580
PkrI GCNGC 2 cut(s) 210, 475
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PspFI CCCAGC 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 246, 364
PstI CTGCAG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 362
PvuII CAGCTG 2 cut(s) 91, 476
RsaI GTAC 5 cut(s) 246, 311, 455, 509, 638
RsaNI GTAC 5 cut(s) 245, 310, 454, 508, 637
SaqAI TTAA 2 cut(s) 611, 661
SatI GCNGC 2 cut(s) 209, 474
Sau3AI GATC 2 cut(s) 188, 362
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 293
SfaNI GCATC 3 cut(s) 460, 471, 583
SfcI CTRYAG 1 cut(s) 445
SfuI TTCGAA 1 cut(s) 106
Sse9I AATT 2 cut(s) 158, 344
SsiI CCGC 1 cut(s) 546
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 590
TaqI TCGA 2 cut(s) 106, 566
TasI AATT 2 cut(s) 158, 344
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 2 cut(s) 611, 661
Tru9I TTAA 2 cut(s) 611, 661
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 2 cut(s) 208, 473
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 152, 507
TspRI CASTG 1 cut(s) 415
Van91I CCANNNNNTGG 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.