Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022525.1

Orthogroup ID

OG0002837

Physical Location & Seq

Genomic Coordinates Reverse (-)

1970 .. 3284

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022525.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggccaagccaaaaacatcctacgaggagacccgaaagcagagaatggaagaaaacaggaagagaatggaagccctcaatctgcctcagctggctcaggcttttcaaacctcttcgtctcccaaaccttctccgatgaagcgccagaagcctcgtcaagtggagaagcagattgttgaggtgaggagatcggctcgcgtcgcaaggcagcctacccctgtttacagagaagttgaggtgaaggtaccaagaagctatgggaggatttctaagcatagggatttgtccaaccgggtatatgctagtgagtacgccagagccgaggcaacagagaaagctgaggaattggagtcgggcttgggatccgattacccgacctttgtgaaaccaatgctccaatcccatgtcactggtggattctggctgggtcttccactccctttctgcaggaagtacctccccaaacgcgatgcagctgtgatgctggtagatgaagaaggtgaggagtacccgactgtatacttggggaacaaaaatggacttagcggtggatggagaggattttcgattgcccatgagttggtggacggtgatgcattggtatttcagttaatcaggcctacgacattcaaggtatcaggcctacgacttttgaactctgttttgagcactcagggaatacatgagaaactcttaaaaccccagaatcgaggactggtatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

241

Amino Acids

27.45

Weight (kDa)

9.81

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42700 AT5G42700
fragaria_vesca	FvH4_2g34580 FvH4_2g34580 FvH4_2g34580 FvH4_2g34580 FvH4_2g34591 FvH4_2g34591
malus_domestica	MD08G1102800.v1.1 MD08G1102900.v1.1 MD15G1084300.v1.1 MD15G1084400.v1.1
prunus_persica	Prupe.1G437900_v2.0.a1 Prupe.1G438000_v2.0.a1
pyrus_communis	pycom08g08430 pycom15g07970
rosa_chinensis	RchiOBHm_Chr6g0307571 RchiOBHm_Chr6g0307581 RchiOBHm_Chr6g0307721 RchiOBHm_Chr6g0307731
rosa_laevigata	RLG00000010704 RLG00000010705
rosa_multiflora	Rmu_sc0022525.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160930 Rroxscaffold_7G00160940
rosa_rugosa	Rorug06G0359900 Rorug06G0360000 Rorug06G0360000 Rorug06G0360000
rosa_samantha	Rh6AG469300 Rh6AG469400 Rh6BG479900 Rh6BG480000 Rh6CG485500 Rh6CG485700 Rh6DG472100 Rh6DG472200
rosa_wichuraiana	Rw6G040980 Rw6G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	2 cut(s)	198, 468
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	2 cut(s)	357, 370
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	4 cut(s)	246, 311, 455, 509
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	3 cut(s)	107, 631, 655
AluBI	AGCT	4 cut(s)	91, 255, 338, 476
AluI	AGCT	4 cut(s)	91, 255, 338, 476
Alw21I	GWGCWC	1 cut(s)	671
Alw26I	GTCTC	2 cut(s)	23, 123
AlwI	GGATC	2 cut(s)	357, 370
AoxI	GGCC	3 cut(s)	3, 617, 640
ApeKI	GCWGC	2 cut(s)	208, 473
Asp718I	GGTACC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	144
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	4 cut(s)	193, 250, 512, 602
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	671
BbvCI	CCTCAGC	2 cut(s)	87, 339
BbvI	GCAGC	2 cut(s)	220, 485
BccI	CCATC	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	23, 123
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	445
BfoI	RGCGCY	1 cut(s)	145
BisI	GCNGC	2 cut(s)	209, 474
BlsI	GCNGC	2 cut(s)	210, 475
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	246, 364
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	3 cut(s)	460, 471, 583
BpiI	GAAGAC	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
Bpu10I	CCTNAGC	3 cut(s)	87, 96, 339
BpuMI	CCSGG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	415, 720
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	17, 557
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMII	CTCAG	4 cut(s)	101, 110, 330, 686
BseNI	ACTGG	2 cut(s)	415, 720
BseRI	GAGGAG	3 cut(s)	41, 199, 518
BseXI	GCAGC	2 cut(s)	220, 485
BseYI	CCCAGC	1 cut(s)	424
Bsh1236I	CGCG	2 cut(s)	198, 468
BshFI	GGCC	3 cut(s)	5, 619, 642
BshNI	GGYRCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	671
BsiSI	CCGG	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	2 cut(s)	23, 123
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	5, 619, 642
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	671
Bsp143I	GATC	2 cut(s)	188, 362
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	3 cut(s)	5, 619, 642
BspCNI	CTCAG	4 cut(s)	100, 109, 331, 685
BspFNI	CGCG	2 cut(s)	198, 468
BspLI	GGNNCC	2 cut(s)	246, 364
BspMAI	CTGCAG	1 cut(s)	449
BspPI	GGATC	2 cut(s)	357, 370
BspT107I	GGYRCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	415, 720
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	188, 362
BssNAI	GTATAC	1 cut(s)	520
Bst1107I	GTATAC	1 cut(s)	520
Bst4CI	ACNGT	2 cut(s)	517, 590
Bst6I	CTCTTC	2 cut(s)	56, 118
BstC8I	GCNNGC	2 cut(s)	93, 196
BstDEI	CTNAG	6 cut(s)	87, 96, 270, 339, 542, 672
BstF5I	GGATG	2 cut(s)	17, 557
BstFNI	CGCG	2 cut(s)	198, 468
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	191, 365
BstMAI	GTCTC	2 cut(s)	23, 123
BstMBI	GATC	2 cut(s)	188, 362
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 200
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	445
BstUI	CGCG	2 cut(s)	198, 468
BstV1I	GCAGC	2 cut(s)	220, 485
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	362
BstZ17I	GTATAC	1 cut(s)	520
BsuRI	GGCC	3 cut(s)	5, 619, 642
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	17, 557
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	93, 196
CfoI	GCGC	1 cut(s)	144
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	4 cut(s)	245, 310, 454, 508
CviAII	CATG	3 cut(s)	404, 575, 683
CviQI	GTAC	4 cut(s)	245, 310, 454, 508
DdeI	CTNAG	6 cut(s)	87, 96, 270, 339, 542, 672
DpnI	GATC	2 cut(s)	190, 364
DpnII	GATC	2 cut(s)	188, 362
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	56, 118
EarI	CTCTTC	2 cut(s)	56, 118
Eco147I	AGGCCT	2 cut(s)	619, 642
Eco31I	GGTCTC	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	598
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	3 cut(s)	407, 578, 686
FaiI	YATR	9 cut(s)	258, 276, 298, 300, 405, 520, 576, 684, 721
FatI	CATG	3 cut(s)	403, 574, 682
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	2 cut(s)	209, 474
FokI	GGATG	2 cut(s)	4, 564
Fsp4HI	GCNGC	2 cut(s)	209, 474
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	209, 474
GsaI	CCCAGC	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	145
HaeIII	GGCC	3 cut(s)	5, 619, 642
HapII	CCGG	1 cut(s)	292
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	407, 578, 686
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	350, 417, 706
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	4 cut(s)	193, 250, 512, 602
Hpy166II	GTNNAC	3 cut(s)	223, 520, 586
Hpy188I	TCNGA	2 cut(s)	135, 367
Hpy8I	GTNNAC	3 cut(s)	223, 520, 586
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	138, 235, 491
HpyCH4III	ACNGT	2 cut(s)	517, 590
HpyCH4V	TGCA	3 cut(s)	447, 473, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 200
HpyF3I	CTNAG	6 cut(s)	87, 96, 270, 339, 542, 672
Hsp92II	CATG	3 cut(s)	407, 578, 686
HspAI	GCGC	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	188, 362
LmnI	GCTCC	1 cut(s)	399
Lsp1109I	GCAGC	2 cut(s)	220, 485
LweI	GCATC	3 cut(s)	460, 471, 583
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	190, 364
MboI	GATC	2 cut(s)	188, 362
MboII	GAAGA	5 cut(s)	62, 73, 105, 422, 506
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	671
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	344
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	312
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	598
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	611, 695
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	91, 476
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	293
MvnI	CGCG	2 cut(s)	198, 468
MwoI	GCNNNNNNNGC	2 cut(s)	148, 200
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	2 cut(s)	188, 362
NlaIII	CATG	3 cut(s)	407, 578, 686
NlaIV	GGNNCC	2 cut(s)	246, 364
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	598
PceI	AGGCCT	2 cut(s)	619, 642
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	417, 706
PflMI	CCANNNNNTGG	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	210, 475
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	246, 364
PstI	CTGCAG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	362
PvuII	CAGCTG	2 cut(s)	91, 476
RsaI	GTAC	4 cut(s)	246, 311, 455, 509
RsaNI	GTAC	4 cut(s)	245, 310, 454, 508
SaqAI	TTAA	2 cut(s)	611, 695
SatI	GCNGC	2 cut(s)	209, 474
Sau3AI	GATC	2 cut(s)	188, 362
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	671
SfaNI	GCATC	3 cut(s)	460, 471, 583
SfcI	CTRYAG	1 cut(s)	445
Sse9I	AATT	1 cut(s)	344
SseBI	AGGCCT	2 cut(s)	619, 642
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	1 cut(s)	303
StuI	AGGCCT	2 cut(s)	619, 642
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	517, 590
TaqI	TCGA	2 cut(s)	566, 709
TasI	AATT	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	417, 706
Tru1I	TTAA	2 cut(s)	611, 695
Tru9I	TTAA	2 cut(s)	611, 695
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	208, 473
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	152, 507
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	1 cut(s)	303
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.