Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Reverse (-)

17237153 .. 17240816

Gene Structure 3664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGATGAAGCTTTGACGAACGCTTCTGCAATCGGTGACCAACGCCAGAAAATCGAACAGTACAAACTCATCCTCTCCTCTGTTCTCTCTTCCAACGATCTTCTCCAAGCTCAGAGATTCATCGATCACATTCTTTCCGATGATGTCCCGTTGGTGGTTTCGAGGCAGCTTTTGCAGTCTTTCGCACAAGAGCTTGGGAGATTAGAACCGGAGACGCAGAAGGAGATTGCTCAATTTACTCTTACCCAGATTCAGCCTAGAGTTGTTTCCTTTGAGGAACAGGCACTTGTTATCAGAGAAAAACTTGCGGGTTTGTATGAATCAGAGCAGGAATGGTCAAAAGCAGCACAGATGTTGAGTGGAATTGATCTGGATTCTGGAATGAGGGCCGTTGACGACAACTTCAAGCTTTCAAAGTGTATCCAAATTGCTCGTTTGTATCTCGAGGATGATGATGCTGTAAATGCAGAGGCTTTTATAAATAAAGCTTCTTTCTTAGTGAGCAATAGTCAGAATGAAGTTTTGAATTTGCAGTACAAGGTCTGCTATGCTAGAATTTTGGACATGAAAAGAAAGTTTTTAGAGGCTGCACTTCGGTATTACGGCATATCTCAGATTGAGCAACGCCAAATAGGGGATGAAGAGATTGATGAGAATGCTTTAGAGCAGGCCCTATCAGCTGCTGTCACATGTACCATATTAGCTGGAGCTGGTCCTCAGCGTTCTCGTGTTCTTGCAACTTTATACAAAGATGAGCGTTGCTCCAAGCTGAAGATTTATCCTATCCTGCAGAAGGTGTATCTGGAAAGGATTTTAAGGAGACCAGAGATTGATGCCTTTTCAGAAGAACTAAGGCCACATCAGAAAGCATCTTTGCCTGACAAATCCACTGTTCTTGACCGTGCTATGATTGAGCATAACCTTCTTAGTGCAAGCAAACTCTACACAAACATAAGGTTTGATGAATTGGGAACTCTGTTGGCGATTGATCCAAGAAAAGCGGAGAAGATAGCAGCTAATATGATTGGGCAAGACCGAATGAGGGGTTCCATAGATCAGGAGGAGGCTGTGATTCATTTTGAGGATGACGTGGAGGAACTACAACAATGGGATCAACAGATATCGGGATTATGCCAAGCTCTCAATGACATTCTGGATGGGATGGCCAAGAAAGGCATGTCTGTTCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

397

Amino Acids

44.96

Weight (kDa)

4.87

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	14 - 207	4.9e-33	PSMD12/CSN4, N-terminal
PCI	PF01399	288 - 362	4.6e-17	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AciI	CCGC	2 cut(s)	308, 1001
AclWI	GGATC	2 cut(s)	983, 1119
AcoI	YGGCCR	1 cut(s)	1164
AcsI	RAATTY	2 cut(s)	526, 555
AcuI	CTGAAG	1 cut(s)	791
AfaI	GTAC	3 cut(s)	62, 536, 694
AfiI	CCNNNNNNNGG	4 cut(s)	154, 634, 793, 1042
AflIII	ACRYGT	1 cut(s)	689
AgsI	TTSAA	3 cut(s)	406, 414, 526
AjiI	CACGTC	1 cut(s)	1090
Alw26I	GTCTC	2 cut(s)	206, 814
AlwI	GGATC	2 cut(s)	983, 1119
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	4 cut(s)	387, 669, 854, 1164
ApeKI	GCWGC	5 cut(s)	166, 344, 587, 680, 1013
ApoI	RAATTY	2 cut(s)	526, 555
AspS9I	GGNCC	3 cut(s)	387, 670, 713
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	713
BalI	TGGCCA	1 cut(s)	1166
BauI	CACGAG	1 cut(s)	726
BbvCI	CCTCAGC	1 cut(s)	717
BbvI	GCAGC	5 cut(s)	178, 356, 574, 667, 1025
BccI	CCATC	2 cut(s)	1151, 1156
BceAI	ACGGC	2 cut(s)	374, 619
BciVI	GTATCC	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	206, 814
BfaI	CTAG	2 cut(s)	258, 552
BfmI	CTRYAG	1 cut(s)	788
BfuI	GTATCC	1 cut(s)	431
BisI	GCNGC	5 cut(s)	167, 345, 588, 681, 1014
BlsI	GCNGC	5 cut(s)	168, 346, 589, 682, 1015
Bme18I	GGWCC	1 cut(s)	713
BmeT110I	CYCGRG	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	1090
BmgT120I	GGNCC	3 cut(s)	387, 670, 713
BmiI	GGNNCC	1 cut(s)	1048
BmsI	GCATC	3 cut(s)	445, 823, 878
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpmI	CTGGAG	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	717
Bsa29I	ATCGAT	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	814
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 634, 793, 1042
BseCI	ATCGAT	1 cut(s)	123
BseGI	GGATG	7 cut(s)	10, 69, 454, 643, 1090, 1162, 1167
BseLI	CCNNNNNNNGG	4 cut(s)	154, 634, 793, 1042
BseMII	CTCAG	3 cut(s)	125, 626, 731
BseRI	GAGGAG	2 cut(s)	67, 1076
BseXI	GCAGC	5 cut(s)	178, 356, 574, 667, 1025
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	4 cut(s)	389, 671, 856, 1166
BshVI	ATCGAT	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	4 cut(s)	154, 634, 793, 1042
BsmAI	GTCTC	2 cut(s)	206, 814
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	4 cut(s)	389, 671, 856, 1166
Bso31I	GGTCTC	1 cut(s)	814
BsoBI	CYCGRG	1 cut(s)	443
Bsp143I	GATC	6 cut(s)	97, 124, 367, 988, 1054, 1111
BspACI	CCGC	2 cut(s)	308, 1001
BspANI	GGCC	4 cut(s)	389, 671, 856, 1166
BspCNI	CTCAG	3 cut(s)	124, 625, 730
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	1048
BspMAI	CTGCAG	1 cut(s)	792
BspPI	GGATC	2 cut(s)	983, 1119
BspTNI	GGTCTC	1 cut(s)	814
BssMI	GATC	6 cut(s)	97, 124, 367, 988, 1054, 1111
BssSI	CACGAG	1 cut(s)	726
Bst2BI	CACGAG	1 cut(s)	726
Bst4CI	ACNGT	3 cut(s)	60, 892, 902
Bst6I	CTCTTC	2 cut(s)	94, 636
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	669, 934
BstDEI	CTNAG	6 cut(s)	111, 496, 612, 717, 851, 926
BstEII	GGTNACC	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	791
BstF5I	GGATG	7 cut(s)	10, 69, 454, 643, 1090, 1162, 1167
BstKTI	GATC	6 cut(s)	100, 127, 370, 991, 1057, 1114
BstMAI	GTCTC	2 cut(s)	206, 814
BstMBI	GATC	6 cut(s)	97, 124, 367, 988, 1054, 1111
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 464, 677
BstNSI	RCATGY	2 cut(s)	693, 1180
BstPI	GGTNACC	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	788
BstV1I	GCAGC	5 cut(s)	178, 356, 574, 667, 1025
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	4 cut(s)	389, 671, 856, 1166
BsuTUI	ATCGAT	1 cut(s)	123
BtrI	CACGTC	1 cut(s)	1090
BtsCI	GGATG	7 cut(s)	10, 69, 454, 643, 1090, 1162, 1167
BtsIMutI	CAGTG	1 cut(s)	888
Cac8I	GCNNGC	2 cut(s)	669, 934
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr13I	GGNCC	3 cut(s)	387, 670, 713
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	61, 535, 693
CspCI	CAANNNNNGTGG	2 cut(s)	877, 912
CviAII	CATG	3 cut(s)	565, 690, 1177
CviQI	GTAC	3 cut(s)	61, 535, 693
DdeI	CTNAG	6 cut(s)	111, 496, 612, 717, 851, 926
DpnI	GATC	6 cut(s)	99, 126, 369, 990, 1056, 1113
DpnII	GATC	6 cut(s)	97, 124, 367, 988, 1054, 1111
EaeI	YGGCCR	1 cut(s)	1164
Eam1104I	CTCTTC	2 cut(s)	94, 636
EarI	CTCTTC	2 cut(s)	94, 636
Eco31I	GGTCTC	1 cut(s)	814
Eco32I	GATATC	1 cut(s)	1122
Eco47I	GGWCC	1 cut(s)	713
Eco57I	CTGAAG	1 cut(s)	791
Eco88I	CYCGRG	1 cut(s)	443
Eco91I	GGTNACC	1 cut(s)	35
EcoNI	CCTNNNNNAGG	1 cut(s)	791
EcoO109I	RGGNCCY	1 cut(s)	670
EcoO65I	GGTNACC	1 cut(s)	35
EcoRV	GATATC	1 cut(s)	1122
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	3 cut(s)	568, 693, 1180
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	564, 689, 1176
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	167, 345, 588, 681, 1014
FokI	GGATG	7 cut(s)	17, 56, 461, 650, 1097, 1169, 1174
Fsp4HI	GCNGC	5 cut(s)	167, 345, 588, 681, 1014
FspBI	CTAG	2 cut(s)	258, 552
GluI	GCNGC	5 cut(s)	167, 345, 588, 681, 1014
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	4 cut(s)	389, 671, 856, 1166
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	223
Hin1II	CATG	3 cut(s)	568, 693, 1180
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	3 cut(s)	9, 407, 486
HinfI	GANTC	5 cut(s)	117, 250, 320, 374, 1072
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	9 cut(s)	114, 139, 296, 325, 513, 615, 844, 864, 1193
Hpy188III	TCNNGA	8 cut(s)	371, 378, 443, 803, 896, 1058, 1125, 1154
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	214, 787, 932
HpyCH4III	ACNGT	3 cut(s)	60, 892, 902
HpyCH4IV	ACGT	1 cut(s)	1089
HpyCH4V	TGCA	8 cut(s)	29, 175, 467, 532, 590, 737, 790, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 464, 677
HpyF3I	CTNAG	6 cut(s)	111, 496, 612, 717, 851, 926
HpySE526I	ACGT	1 cut(s)	1089
Hsp92II	CATG	3 cut(s)	568, 693, 1180
Kzo9I	GATC	6 cut(s)	97, 124, 367, 988, 1054, 1111
LmnI	GCTCC	2 cut(s)	707, 767
Lsp1109I	GCAGC	5 cut(s)	178, 356, 574, 667, 1025
LweI	GCATC	3 cut(s)	445, 823, 878
MaeI	CTAG	2 cut(s)	258, 552
MaeII	ACGT	1 cut(s)	1089
MaeIII	GTNAC	2 cut(s)	35, 685
MalI	GATC	6 cut(s)	99, 126, 369, 990, 1056, 1113
MboI	GATC	6 cut(s)	97, 124, 367, 988, 1054, 1111
MboII	GAAGA	6 cut(s)	81, 92, 653, 784, 857, 1018
MlsI	TGGCCA	1 cut(s)	1166
MluCI	AATT	6 cut(s)	233, 363, 426, 526, 555, 965
MluNI	TGGCCA	1 cut(s)	1166
MmeI	TCCRAC	1 cut(s)	117
Mox20I	TGGCCA	1 cut(s)	1166
MscI	TGGCCA	1 cut(s)	1166
MseI	TTAA	1 cut(s)	815
Msp20I	TGGCCA	1 cut(s)	1166
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	661
MwoI	GCNNNNNNNGC	3 cut(s)	172, 464, 677
NdeII	GATC	6 cut(s)	97, 124, 367, 988, 1054, 1111
NlaIII	CATG	3 cut(s)	568, 693, 1180
NlaIV	GGNNCC	1 cut(s)	1048
NmuCI	GTSAC	2 cut(s)	35, 685
NspI	RCATGY	2 cut(s)	693, 1180
PaeR7I	CTCGAG	1 cut(s)	443
PciI	ACATGT	1 cut(s)	689
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	5 cut(s)	117, 250, 320, 374, 1072
PkrI	GCNGC	5 cut(s)	168, 346, 589, 682, 1015
PscI	ACATGT	1 cut(s)	689
PsiI	TTATAA	1 cut(s)	479
PspEI	GGTNACC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	1048
PspPI	GGNCC	3 cut(s)	387, 670, 713
PstI	CTGCAG	1 cut(s)	792
PstNI	CAGNNNCTG	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	62, 536, 694
RsaNI	GTAC	3 cut(s)	61, 535, 693
SaqAI	TTAA	1 cut(s)	815
SatI	GCNGC	5 cut(s)	167, 345, 588, 681, 1014
Sau3AI	GATC	6 cut(s)	97, 124, 367, 988, 1054, 1111
Sau96I	GGNCC	3 cut(s)	387, 670, 713
SfaNI	GCATC	3 cut(s)	445, 823, 878
SfcI	CTRYAG	1 cut(s)	788
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	713
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	233, 363, 426, 526, 555, 965
SsiI	CCGC	2 cut(s)	308, 1001
SspMI	CTAG	2 cut(s)	258, 552
TaaI	ACNGT	3 cut(s)	60, 892, 902
TaiI	ACGT	1 cut(s)	1092
TaqI	TCGA	4 cut(s)	54, 123, 161, 444
TaqII	GACCGA	1 cut(s)	1050
TasI	AATT	6 cut(s)	233, 363, 426, 526, 555, 965
TatI	WGTACW	2 cut(s)	60, 534
TfiI	GAWTC	5 cut(s)	117, 250, 320, 374, 1072
Tru1I	TTAA	1 cut(s)	815
Tru9I	TTAA	1 cut(s)	815
TscAI	CASTG	1 cut(s)	895
TseFI	GTSAC	2 cut(s)	35, 685
TseI	GCWGC	5 cut(s)	166, 344, 587, 680, 1013
Tsp45I	GTSAC	2 cut(s)	35, 685
TspDTI	ATGAA	8 cut(s)	21, 109, 333, 531, 581, 654, 978, 1064
TspRI	CASTG	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	713
XagI	CCTNNNNNAGG	1 cut(s)	791
XapI	RAATTY	2 cut(s)	526, 555
XceI	RCATGY	2 cut(s)	693, 1180
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	2 cut(s)	258, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.