MD08G1033300.v1.1

COP9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
2363158 .. 2367196
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1033300.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGGAGAGTGCCTTCGCGAGCGCCTCTGCGATCTCCGACCAGCGGCAGAAGATTGAGCAGTACAAGCACATTCTCTCCACCGTGATTTCCTCAAGCGACGTTGTTCAGGCCAAGAAGTTCATCGATCACTTGTTGTCGGATGATGTTCCGTTGGTGGTTTCCCGGCAGCTTTTGCACACTTTTGCCCAGGAGTTGGGGCGGTGGGAGCCGGAGACCCAGAAGGATATTGCCCATTATGCCCTTTCTCAGATTCGCGTCGTTTCATTTGAAGAACAGGTGACGATAATAAGAGAGAAACTCGCGGAATTGTATGAATCTGAGCAACAATGGTCAAAAGCAGCTCAGATGCTCAGTGGAATTAACCTCGACTCAGGAACGAGAGCCGTTGATGACACATTCAAGTTATCAAAATGTGTCCAAATTGCTCGCCTATATCTCGAGGATGATGATGCTGTCAATGCAGAAGCTTTTATTCATAAAGCTTCATTCTTGATTACAACTATTCAGCATGAAGTATTGACTTTAGAGTATAAGATTTGTTATGCAAGGATTTTAGATTTAAAAAGAAGGTTCTTGGAAGCAGCACTACGTTATTATGATTTTTCTCAGATTGAAAAGAGGCAAATAGGAGATCAAGAGATAGATGAGGAAGCATTGGAGCAAGCTCTATCTGCTGCAGTTACATGTACAATATTAGCCGCGGCAGGACCCCAACGTTCTCGTGTTCTTGCCACTTTGTACAAGGATGAACGATGCTCAAAGTTAAAAATATATCCAATACTACAAAAGGTGTATTTGGAGAGAATTTTGAGGAAACCAGAAATTGAAGCATTTGCTGAAGAGTTAAAGCCACATCAGAAAGCACTTCTTCCAGACAATTTTACGGTGTTAGATCGTGCAATGATTGAACATAATCTTCTGAGTGCCAGCAAACTTTACACCAATATAAGTTTTGAAGAATTGGGCACTTTGCTGGGAATTGAGCCTCATAAGGCTGAGAAGATTGCATCAAAAATGATATACGAGGACAGAATGAGGGGATCTATTGATCAGGTGGAAGCTGTCATACATTTTGAGGATGACTCGGAAGAGCTGCAGCAATGGGATCAGCAGATTGTTGGCCTATGTCAGGCGCTCAATGACGTCTTGGATAGCATGGCAAAGAAGGGTATGTCAATTCCCGTCTGA

Protein Analysis

396

Amino Acids

45.07

Weight (kDa)

5.14

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSMD12-CSN4_N PF22241 12 - 205 1.1e-27 PSMD12/CSN4, N-terminal
PCI PF01399 286 - 360 1.6e-18 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1146
AccB7I CCANNNNNTGG 1 cut(s) 193
AccII CGCG 4 cut(s) 17, 255, 302, 701
AciI CCGC 5 cut(s) 43, 199, 302, 699, 701
AclI AACGTT 1 cut(s) 715
AclWI GGATC 2 cut(s) 1048, 1113
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 1 cut(s) 858
AcyI GRCGYC 1 cut(s) 1143
AfaI GTAC 3 cut(s) 62, 688, 740
AfiI CCNNNNNNNGG 3 cut(s) 42, 193, 1129
AflIII ACRYGT 1 cut(s) 683
AgsI TTSAA 6 cut(s) 269, 400, 614, 827, 908, 956
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 7 cut(s) 169, 341, 467, 482, 665, 1061, 1093
AluI AGCT 7 cut(s) 169, 341, 467, 482, 665, 1061, 1093
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 1048, 1113
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 2 cut(s) 108, 1120
ApeKI GCWGC 6 cut(s) 166, 338, 581, 674, 1093, 1096
ApoI RAATTY 1 cut(s) 804
AspLEI GCGC 2 cut(s) 23, 1135
AspS9I GGNCC 1 cut(s) 707
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 968
BarI GAAGNNNNNNTAC 4 cut(s) 570, 602, 1050, 1082
BauI CACGAG 1 cut(s) 720
BbvI GCAGC 6 cut(s) 178, 350, 593, 661, 1080, 1108
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 2 cut(s) 675, 1094
BfoI RGCGCY 2 cut(s) 24, 1136
BisI GCNGC 9 cut(s) 44, 167, 339, 582, 675, 699, 702, 1094, 1097
BlsI GCNGC 9 cut(s) 45, 168, 340, 583, 676, 700, 703, 1095, 1098
Bme1390I CCNGG 2 cut(s) 163, 188
Bme18I GGWCC 1 cut(s) 707
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 2 cut(s) 207, 709
BmrFI CCNGG 2 cut(s) 163, 188
BmsI GCATC 4 cut(s) 336, 439, 743, 1016
BplI GAGNNNNNCTC 4 cut(s) 282, 314, 1067, 1099
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 1143
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 186, 699
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 193, 1129
Bse3DI GCAATG 2 cut(s) 906, 1106
BseBI CCWGG 1 cut(s) 188
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 186, 699
BseGI GGATG 4 cut(s) 145, 448, 751, 1084
BseLI CCNNNNNNNGG 3 cut(s) 42, 193, 1129
BseMI GCAATG 2 cut(s) 906, 1106
BseMII CTCAG 8 cut(s) 260, 309, 356, 364, 384, 620, 911, 987
BseSI GKGCMC 1 cut(s) 968
BseXI GCAGC 6 cut(s) 178, 350, 593, 661, 1080, 1108
BseYI CCCAGC 1 cut(s) 973
Bsh1236I CGCG 4 cut(s) 17, 255, 302, 701
BshFI GGCC 2 cut(s) 110, 1122
BshVI ATCGAT 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 2 cut(s) 163, 209
BslI CCNNNNNNNGG 3 cut(s) 42, 193, 1129
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 2 cut(s) 110, 1122
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 968
Bsp1407I TGTACA 2 cut(s) 686, 738
Bsp143I GATC 7 cut(s) 30, 124, 631, 892, 1040, 1048, 1105
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 5 cut(s) 43, 199, 302, 699, 701
BspANI GGCC 2 cut(s) 110, 1122
BspCNI CTCAG 8 cut(s) 259, 310, 355, 363, 383, 619, 912, 988
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 4 cut(s) 17, 255, 302, 701
BspLI GGNNCC 2 cut(s) 207, 709
BspMAI CTGCAG 2 cut(s) 679, 1098
BspPI GGATC 2 cut(s) 1048, 1113
BspQI GCTCTTC 1 cut(s) 1083
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 906, 1106
BsrGI TGTACA 2 cut(s) 686, 738
BssECI CCNNGG 2 cut(s) 186, 699
BssMI GATC 7 cut(s) 30, 124, 631, 892, 1040, 1048, 1105
BssNI GRCGYC 1 cut(s) 1143
BssSI CACGAG 1 cut(s) 720
Bst2BI CACGAG 1 cut(s) 720
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 82, 886
Bst6I CTCTTC 2 cut(s) 834, 1083
BstACI GRCGYC 1 cut(s) 1143
BstAPI GCANNNNNTGC 1 cut(s) 172
BstAUI TGTACA 2 cut(s) 686, 738
BstC8I GCNNGC 4 cut(s) 19, 427, 663, 928
BstDEI CTNAG 8 cut(s) 246, 318, 342, 350, 370, 606, 920, 996
BstDSI CCRYGG 1 cut(s) 699
BstENI CCTNNNNNAGG 1 cut(s) 1127
BstF5I GGATG 4 cut(s) 145, 448, 751, 1084
BstFNI CGCG 4 cut(s) 17, 255, 302, 701
BstH2I RGCGCY 2 cut(s) 24, 1136
BstHHI GCGC 2 cut(s) 23, 1135
BstKTI GATC 7 cut(s) 33, 127, 634, 895, 1043, 1051, 1108
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 7 cut(s) 30, 124, 631, 892, 1040, 1048, 1105
BstMWI GCNNNNNNNGC 6 cut(s) 64, 172, 205, 236, 458, 671
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 687
BstSCI CCNGG 2 cut(s) 161, 186
BstSFI CTRYAG 2 cut(s) 675, 1094
BstSLI GKGCMC 1 cut(s) 968
BstUI CGCG 4 cut(s) 17, 255, 302, 701
BstV1I GCAGC 6 cut(s) 178, 350, 593, 661, 1080, 1108
BstX2I RGATCY 1 cut(s) 1040
BstYI RGATCY 1 cut(s) 1040
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 2 cut(s) 110, 1122
BsuTUI ATCGAT 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 4 cut(s) 145, 448, 751, 1084
BtsIMutI CAGTG 1 cut(s) 358
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 4 cut(s) 19, 427, 663, 928
CfoI GCGC 2 cut(s) 23, 1135
Cfr13I GGNCC 1 cut(s) 707
Cfr42I CCGCGG 1 cut(s) 702
ClaI ATCGAT 1 cut(s) 123
CseI GACGC 1 cut(s) 244
Csp6I GTAC 3 cut(s) 61, 687, 739
CviAII CATG 3 cut(s) 509, 684, 1156
CviQI GTAC 3 cut(s) 61, 687, 739
DdeI CTNAG 8 cut(s) 246, 318, 342, 350, 370, 606, 920, 996
DpnI GATC 7 cut(s) 32, 126, 633, 894, 1042, 1050, 1107
DpnII GATC 7 cut(s) 30, 124, 631, 892, 1040, 1048, 1105
DraI TTTAAA 1 cut(s) 561
Eam1104I CTCTTC 2 cut(s) 834, 1083
EarI CTCTTC 2 cut(s) 834, 1083
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 858
Eco88I CYCGRG 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 1127
EcoO109I RGGNCCY 1 cut(s) 707
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 512, 687, 1159
FalI AAGNNNNNCTT 2 cut(s) 852, 884
FatI CATG 3 cut(s) 508, 683, 1155
FbaI TGATCA 1 cut(s) 1048
Fnu4HI GCNGC 9 cut(s) 44, 167, 339, 582, 675, 699, 702, 1094, 1097
FokI GGATG 4 cut(s) 152, 455, 758, 1091
Fsp4HI GCNGC 9 cut(s) 44, 167, 339, 582, 675, 699, 702, 1094, 1097
GlaI GCGC 2 cut(s) 22, 1134
GluI GCNGC 9 cut(s) 44, 167, 339, 582, 675, 699, 702, 1094, 1097
GsaI CCCAGC 1 cut(s) 977
HaeII RGCGCY 2 cut(s) 24, 1136
HaeIII GGCC 2 cut(s) 110, 1122
HapII CCGG 2 cut(s) 163, 209
HgaI GACGC 1 cut(s) 244
HhaI GCGC 2 cut(s) 23, 1135
Hin1I GRCGYC 1 cut(s) 1143
Hin1II CATG 3 cut(s) 512, 687, 1159
Hin6I GCGC 2 cut(s) 21, 1133
HinP1I GCGC 2 cut(s) 21, 1133
HindIII AAGCTT 2 cut(s) 465, 480
HinfI GANTC 4 cut(s) 250, 314, 368, 1082
HpaII CCGG 2 cut(s) 163, 209
HphI GGTGA 1 cut(s) 289
Hpy188III TCNNGA 6 cut(s) 16, 372, 437, 490, 635, 872
Hpy99I CGWCG 2 cut(s) 101, 260
HpyAV CCTTC 4 cut(s) 22, 214, 561, 1159
HpyCH4III ACNGT 2 cut(s) 82, 886
HpyCH4IV ACGT 4 cut(s) 99, 589, 715, 1143
HpyCH4V TGCA 7 cut(s) 175, 461, 545, 677, 899, 1007, 1096
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 172, 205, 236, 458, 671
HpyF3I CTNAG 8 cut(s) 246, 318, 342, 350, 370, 606, 920, 996
HpySE526I ACGT 4 cut(s) 99, 589, 715, 1143
Hsp92I GRCGYC 1 cut(s) 1143
Hsp92II CATG 3 cut(s) 512, 687, 1159
HspAI GCGC 2 cut(s) 21, 1133
Ksp22I TGATCA 1 cut(s) 1048
KspI CCGCGG 1 cut(s) 702
Kzo9I GATC 7 cut(s) 30, 124, 631, 892, 1040, 1048, 1105
LguI GCTCTTC 1 cut(s) 1083
LmnI GCTCC 2 cut(s) 205, 658
Lsp1109I GCAGC 6 cut(s) 178, 350, 593, 661, 1080, 1108
LweI GCATC 4 cut(s) 336, 439, 743, 1016
MaeII ACGT 4 cut(s) 99, 589, 715, 1143
MaeIII GTNAC 2 cut(s) 277, 679
MalI GATC 7 cut(s) 32, 126, 633, 894, 1042, 1050, 1107
MboI GATC 7 cut(s) 30, 124, 631, 892, 1040, 1048, 1105
MboII GAAGA 8 cut(s) 61, 281, 851, 860, 908, 968, 1012, 1100
MflI RGATCY 1 cut(s) 1040
MhlI GDGCHC 1 cut(s) 968
MluCI AATT 9 cut(s) 305, 357, 420, 804, 822, 877, 959, 978, 1176
MlyI GAGTC 2 cut(s) 362, 1076
MmeI TCCRAC 2 cut(s) 60, 117
MseI TTAA 4 cut(s) 360, 560, 764, 845
MspA1I CMGCKG 2 cut(s) 43, 701
MspI CCGG 2 cut(s) 163, 209
MspR9I CCNGG 2 cut(s) 163, 188
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 4 cut(s) 17, 255, 302, 701
MwoI GCNNNNNNNGC 6 cut(s) 64, 172, 205, 236, 458, 671
NciI CCSGG 1 cut(s) 163
NdeII GATC 7 cut(s) 30, 124, 631, 892, 1040, 1048, 1105
NlaIII CATG 3 cut(s) 512, 687, 1159
NlaIV GGNNCC 2 cut(s) 207, 709
NmuCI GTSAC 1 cut(s) 277
NruI TCGCGA 1 cut(s) 17
NspI RCATGY 1 cut(s) 687
PaeR7I CTCGAG 1 cut(s) 437
PciI ACATGT 1 cut(s) 683
PciSI GCTCTTC 1 cut(s) 1083
PfeI GAWTC 2 cut(s) 250, 314
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 9 cut(s) 45, 168, 340, 583, 676, 700, 703, 1095, 1098
PleI GAGTC 2 cut(s) 362, 1076
PpsI GAGTC 2 cut(s) 362, 1076
PpuMI RGGWCCY 1 cut(s) 707
PscI ACATGT 1 cut(s) 683
Psp1406I AACGTT 1 cut(s) 715
Psp5II RGGWCCY 1 cut(s) 707
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 973
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 207, 709
PspPI GGNCC 1 cut(s) 707
PspPPI RGGWCCY 1 cut(s) 707
PstI CTGCAG 2 cut(s) 679, 1098
PsuI RGATCY 1 cut(s) 1040
RruI TCGCGA 1 cut(s) 17
RsaI GTAC 3 cut(s) 62, 688, 740
RsaNI GTAC 3 cut(s) 61, 687, 739
SacII CCGCGG 1 cut(s) 702
SapI GCTCTTC 1 cut(s) 1083
SaqAI TTAA 4 cut(s) 360, 560, 764, 845
SatI GCNGC 9 cut(s) 44, 167, 339, 582, 675, 699, 702, 1094, 1097
Sau3AI GATC 7 cut(s) 30, 124, 631, 892, 1040, 1048, 1105
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 2 cut(s) 362, 1076
ScrFI CCNGG 2 cut(s) 163, 188
SduI GDGCHC 1 cut(s) 968
SfaNI GCATC 4 cut(s) 336, 439, 743, 1016
SfcI CTRYAG 2 cut(s) 675, 1094
Sfr274I CTCGAG 1 cut(s) 437
Sfr303I CCGCGG 1 cut(s) 702
SgrBI CCGCGG 1 cut(s) 702
SinI GGWCC 1 cut(s) 707
SlaI CTCGAG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 91, 437
SmoI CTYRAG 2 cut(s) 91, 437
Sse9I AATT 9 cut(s) 305, 357, 420, 804, 822, 877, 959, 978, 1176
SsiI CCGC 5 cut(s) 43, 199, 302, 699, 701
SspI AATATT 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 161, 186
TaaI ACNGT 2 cut(s) 82, 886
TaiI ACGT 4 cut(s) 102, 592, 718, 1146
TaqI TCGA 3 cut(s) 123, 366, 438
TasI AATT 9 cut(s) 305, 357, 420, 804, 822, 877, 959, 978, 1176
TatI WGTACW 3 cut(s) 60, 686, 738
TauI GCSGC 3 cut(s) 46, 701, 704
TfiI GAWTC 2 cut(s) 250, 314
Tru1I TTAA 4 cut(s) 360, 560, 764, 845
Tru9I TTAA 4 cut(s) 360, 560, 764, 845
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 6 cut(s) 166, 338, 581, 674, 1093, 1096
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 7 cut(s) 109, 252, 327, 464, 474, 525, 762
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 358
Van91I CCANNNNNTGG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 707
XagI CCTNNNNNAGG 1 cut(s) 1127
XapI RAATTY 1 cut(s) 804
XceI RCATGY 1 cut(s) 687
XhoI CTCGAG 1 cut(s) 437
ZraI GACGTC 1 cut(s) 1144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.