COP9 signalosome complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G42970 |
| fragaria_vesca | FvH4_2g40000 FvH4_2g40000 |
| malus_domestica | MD08G1033300.v1.1 MD15G1029900.v1.1 |
| prunus_persica | Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 |
| pyrus_communis | pycom08g02640 pycom15g02630 |
| rosa_chinensis | RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751 |
| rosa_laevigata | RLG00000011305 |
| rosa_multiflora | Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00167450 |
| rosa_rugosa | Rorug06G0298900 |
| rosa_samantha | Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800 |
| rosa_wichuraiana | Rw1G020280 Rw7G025650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 102 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 193 |
| AccII | CGCG | 1 cut(s) | 17 |
| AciI | CCGC | 4 cut(s) | 43, 199, 302, 699 |
| AclI | AACGTT | 1 cut(s) | 715 |
| AclWI | GGATC | 3 cut(s) | 637, 1048, 1113 |
| AcsI | RAATTY | 1 cut(s) | 804 |
| AcuI | CTGAAG | 2 cut(s) | 858, 1107 |
| AcyI | GRCGYC | 1 cut(s) | 99 |
| AfaI | GTAC | 5 cut(s) | 62, 311, 530, 688, 740 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 42, 193, 1129 |
| AflIII | ACRYGT | 1 cut(s) | 683 |
| AgsI | TTSAA | 5 cut(s) | 93, 400, 614, 908, 956 |
| AjnI | CCWGG | 1 cut(s) | 186 |
| AluBI | AGCT | 6 cut(s) | 169, 341, 467, 665, 1061, 1093 |
| AluI | AGCT | 6 cut(s) | 169, 341, 467, 665, 1061, 1093 |
| Alw26I | GTCTC | 1 cut(s) | 206 |
| AlwI | GGATC | 3 cut(s) | 637, 1048, 1113 |
| Ama87I | CYCGRG | 1 cut(s) | 437 |
| AoxI | GGCC | 3 cut(s) | 108, 993, 1120 |
| ApeKI | GCWGC | 6 cut(s) | 166, 338, 581, 674, 701, 1093 |
| ApoI | RAATTY | 1 cut(s) | 804 |
| AseI | ATTAAT | 1 cut(s) | 360 |
| AspLEI | GCGC | 1 cut(s) | 23 |
| AspS9I | GGNCC | 1 cut(s) | 707 |
| AsuC2I | CCSGG | 1 cut(s) | 163 |
| AsuHPI | GGTGA | 1 cut(s) | 289 |
| AsuII | TTCGAA | 1 cut(s) | 267 |
| AvaI | CYCGRG | 1 cut(s) | 437 |
| AvaII | GGWCC | 1 cut(s) | 707 |
| BaeGI | GKGCMC | 1 cut(s) | 968 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 570, 602, 1050, 1082 |
| BauI | CACGAG | 1 cut(s) | 720 |
| BbvI | GCAGC | 6 cut(s) | 178, 350, 593, 661, 713, 1080 |
| BceAI | ACGGC | 2 cut(s) | 368, 437 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 986, 1020 |
| BciT130I | CCWGG | 1 cut(s) | 188 |
| BclI | TGATCA | 1 cut(s) | 1048 |
| BcnI | CCSGG | 1 cut(s) | 163 |
| BcoDI | GTCTC | 1 cut(s) | 206 |
| BfmI | CTRYAG | 1 cut(s) | 675 |
| BfoI | RGCGCY | 1 cut(s) | 24 |
| BisI | GCNGC | 8 cut(s) | 44, 167, 339, 582, 675, 699, 702, 1094 |
| BlsI | GCNGC | 8 cut(s) | 45, 168, 340, 583, 676, 700, 703, 1095 |
| Bme1390I | CCNGG | 2 cut(s) | 163, 188 |
| Bme18I | GGWCC | 1 cut(s) | 707 |
| BmeT110I | CYCGRG | 1 cut(s) | 437 |
| BmgT120I | GGNCC | 1 cut(s) | 707 |
| BmiI | GGNNCC | 2 cut(s) | 207, 709 |
| BmrFI | CCNGG | 2 cut(s) | 163, 188 |
| BmsI | GCATC | 4 cut(s) | 336, 439, 743, 1016 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 740, 772 |
| BpmI | CTGGAG | 1 cut(s) | 677 |
| Bpu14I | TTCGAA | 1 cut(s) | 267 |
| BpuMI | CCSGG | 1 cut(s) | 163 |
| Bsa29I | ATCGAT | 2 cut(s) | 123, 632 |
| BsaHI | GRCGYC | 1 cut(s) | 99 |
| BsaI | GGTCTC | 1 cut(s) | 206 |
| BsaJI | CCNNGG | 1 cut(s) | 186 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 59, 89 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 42, 193, 1129 |
| Bse1I | ACTGG | 1 cut(s) | 660 |
| Bse3DI | GCAATG | 1 cut(s) | 906 |
| BseBI | CCWGG | 1 cut(s) | 188 |
| BseCI | ATCGAT | 2 cut(s) | 123, 632 |
| BseDI | CCNNGG | 1 cut(s) | 186 |
| BseGI | GGATG | 2 cut(s) | 145, 1084 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 42, 193, 1129 |
| BseMI | GCAATG | 1 cut(s) | 906 |
| BseMII | CTCAG | 7 cut(s) | 260, 309, 356, 364, 384, 620, 911 |
| BseNI | ACTGG | 1 cut(s) | 660 |
| BseSI | GKGCMC | 1 cut(s) | 968 |
| BseXI | GCAGC | 6 cut(s) | 178, 350, 593, 661, 713, 1080 |
| BseYI | CCCAGC | 1 cut(s) | 973 |
| Bsh1236I | CGCG | 1 cut(s) | 17 |
| BshFI | GGCC | 3 cut(s) | 110, 995, 1122 |
| BshVI | ATCGAT | 2 cut(s) | 123, 632 |
| BsiHKCI | CYCGRG | 1 cut(s) | 437 |
| BsiSI | CCGG | 2 cut(s) | 163, 209 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 42, 193, 1129 |
| BsmAI | GTCTC | 1 cut(s) | 206 |
| BsmI | GAATGC | 1 cut(s) | 463 |
| BsnI | GGCC | 3 cut(s) | 110, 995, 1122 |
| Bso31I | GGTCTC | 1 cut(s) | 206 |
| BsoBI | CYCGRG | 1 cut(s) | 437 |
| Bsp119I | TTCGAA | 1 cut(s) | 267 |
| Bsp1286I | GDGCHC | 1 cut(s) | 968 |
| Bsp1407I | TGTACA | 2 cut(s) | 686, 738 |
| Bsp143I | GATC | 9 cut(s) | 30, 51, 124, 629, 633, 892, 1040, 1048, 1105 |
| Bsp68I | TCGCGA | 1 cut(s) | 17 |
| BspACI | CCGC | 4 cut(s) | 43, 199, 302, 699 |
| BspANI | GGCC | 3 cut(s) | 110, 995, 1122 |
| BspCNI | CTCAG | 7 cut(s) | 259, 310, 355, 363, 383, 619, 912 |
| BspDI | ATCGAT | 2 cut(s) | 123, 632 |
| BspFNI | CGCG | 1 cut(s) | 17 |
| BspLI | GGNNCC | 2 cut(s) | 207, 709 |
| BspMAI | CTGCAG | 1 cut(s) | 679 |
| BspPI | GGATC | 3 cut(s) | 637, 1048, 1113 |
| BspQI | GCTCTTC | 1 cut(s) | 1083 |
| BspT104I | TTCGAA | 1 cut(s) | 267 |
| BspTNI | GGTCTC | 1 cut(s) | 206 |
| BsrDI | GCAATG | 1 cut(s) | 906 |
| BsrGI | TGTACA | 2 cut(s) | 686, 738 |
| BsrI | ACTGG | 1 cut(s) | 660 |
| BssECI | CCNNGG | 1 cut(s) | 186 |
| BssMI | GATC | 9 cut(s) | 30, 51, 124, 629, 633, 892, 1040, 1048, 1105 |
| BssNI | GRCGYC | 1 cut(s) | 99 |
| BssSI | CACGAG | 1 cut(s) | 720 |
| Bst2BI | CACGAG | 1 cut(s) | 720 |
| Bst2UI | CCWGG | 1 cut(s) | 188 |
| Bst4CI | ACNGT | 3 cut(s) | 82, 886, 1101 |
| Bst6I | CTCTTC | 2 cut(s) | 834, 1083 |
| BstACI | GRCGYC | 1 cut(s) | 99 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 172 |
| BstAUI | TGTACA | 2 cut(s) | 686, 738 |
| BstBI | TTCGAA | 1 cut(s) | 267 |
| BstC8I | GCNNGC | 4 cut(s) | 19, 427, 663, 928 |
| BstDEI | CTNAG | 7 cut(s) | 246, 318, 342, 350, 370, 606, 920 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1127 |
| BstF5I | GGATG | 2 cut(s) | 145, 1084 |
| BstFNI | CGCG | 1 cut(s) | 17 |
| BstH2I | RGCGCY | 1 cut(s) | 24 |
| BstHHI | GCGC | 1 cut(s) | 23 |
| BstKTI | GATC | 9 cut(s) | 33, 54, 127, 632, 636, 895, 1043, 1051, 1108 |
| BstMAI | GTCTC | 1 cut(s) | 206 |
| BstMBI | GATC | 9 cut(s) | 30, 51, 124, 629, 633, 892, 1040, 1048, 1105 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 64, 172, 205, 236, 458, 671 |
| BstNI | CCWGG | 1 cut(s) | 188 |
| BstNSI | RCATGY | 1 cut(s) | 687 |
| BstSCI | CCNGG | 2 cut(s) | 161, 186 |
| BstSFI | CTRYAG | 1 cut(s) | 675 |
| BstSLI | GKGCMC | 1 cut(s) | 968 |
| BstUI | CGCG | 1 cut(s) | 17 |
| BstV1I | GCAGC | 6 cut(s) | 178, 350, 593, 661, 713, 1080 |
| BstX2I | RGATCY | 1 cut(s) | 1040 |
| BstYI | RGATCY | 1 cut(s) | 1040 |
| Bsu15I | ATCGAT | 2 cut(s) | 123, 632 |
| BsuRI | GGCC | 3 cut(s) | 110, 995, 1122 |
| BsuTUI | ATCGAT | 2 cut(s) | 123, 632 |
| BtgZI | GCGATG | 1 cut(s) | 766 |
| BtsCI | GGATG | 2 cut(s) | 145, 1084 |
| BtsIMutI | CAGTG | 3 cut(s) | 358, 653, 1106 |
| BtuMI | TCGCGA | 1 cut(s) | 17 |
| Cac8I | GCNNGC | 4 cut(s) | 19, 427, 663, 928 |
| CfoI | GCGC | 1 cut(s) | 23 |
| Cfr13I | GGNCC | 1 cut(s) | 707 |
| ClaI | ATCGAT | 2 cut(s) | 123, 632 |
| Csp6I | GTAC | 5 cut(s) | 61, 310, 529, 687, 739 |
| CviAII | CATG | 4 cut(s) | 509, 684, 1156, 1171 |
| CviQI | GTAC | 5 cut(s) | 61, 310, 529, 687, 739 |
| DdeI | CTNAG | 7 cut(s) | 246, 318, 342, 350, 370, 606, 920 |
| DpnI | GATC | 9 cut(s) | 32, 53, 126, 631, 635, 894, 1042, 1050, 1107 |
| DpnII | GATC | 9 cut(s) | 30, 51, 124, 629, 633, 892, 1040, 1048, 1105 |
| DraI | TTTAAA | 1 cut(s) | 561 |
| Eam1104I | CTCTTC | 2 cut(s) | 834, 1083 |
| EarI | CTCTTC | 2 cut(s) | 834, 1083 |
| Eco31I | GGTCTC | 1 cut(s) | 206 |
| Eco47I | GGWCC | 1 cut(s) | 707 |
| Eco57I | CTGAAG | 2 cut(s) | 858, 1107 |
| Eco88I | CYCGRG | 1 cut(s) | 437 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1127 |
| EcoO109I | RGGNCCY | 1 cut(s) | 707 |
| EcoRII | CCWGG | 1 cut(s) | 186 |
| FaeI | CATG | 4 cut(s) | 512, 687, 1159, 1174 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 852, 884 |
| FatI | CATG | 4 cut(s) | 508, 683, 1155, 1170 |
| FbaI | TGATCA | 1 cut(s) | 1048 |
| Fnu4HI | GCNGC | 8 cut(s) | 44, 167, 339, 582, 675, 699, 702, 1094 |
| FokI | GGATG | 2 cut(s) | 152, 1091 |
| Fsp4HI | GCNGC | 8 cut(s) | 44, 167, 339, 582, 675, 699, 702, 1094 |
| GlaI | GCGC | 1 cut(s) | 22 |
| GluI | GCNGC | 8 cut(s) | 44, 167, 339, 582, 675, 699, 702, 1094 |
| GsaI | CCCAGC | 1 cut(s) | 977 |
| GsuI | CTGGAG | 1 cut(s) | 677 |
| HaeII | RGCGCY | 1 cut(s) | 24 |
| HaeIII | GGCC | 3 cut(s) | 110, 995, 1122 |
| HapII | CCGG | 2 cut(s) | 163, 209 |
| HhaI | GCGC | 1 cut(s) | 23 |
| Hin1I | GRCGYC | 1 cut(s) | 99 |
| Hin1II | CATG | 4 cut(s) | 512, 687, 1159, 1174 |
| Hin6I | GCGC | 1 cut(s) | 21 |
| HinP1I | GCGC | 1 cut(s) | 21 |
| HindIII | AAGCTT | 1 cut(s) | 465 |
| HinfI | GANTC | 4 cut(s) | 250, 314, 368, 1082 |
| HpaII | CCGG | 2 cut(s) | 163, 209 |
| HphI | GGTGA | 1 cut(s) | 289 |
| Hpy188III | TCNNGA | 8 cut(s) | 16, 365, 372, 437, 490, 637, 872, 1076 |
| Hpy99I | CGWCG | 2 cut(s) | 101, 104 |
| HpyAV | CCTTC | 4 cut(s) | 22, 214, 561, 1159 |
| HpyCH4III | ACNGT | 3 cut(s) | 82, 886, 1101 |
| HpyCH4IV | ACGT | 3 cut(s) | 99, 589, 715 |
| HpyCH4V | TGCA | 7 cut(s) | 175, 461, 545, 677, 899, 1007, 1096 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 64, 172, 205, 236, 458, 671 |
| HpyF3I | CTNAG | 7 cut(s) | 246, 318, 342, 350, 370, 606, 920 |
| HpySE526I | ACGT | 3 cut(s) | 99, 589, 715 |
| Hsp92I | GRCGYC | 1 cut(s) | 99 |
| Hsp92II | CATG | 4 cut(s) | 512, 687, 1159, 1174 |
| HspAI | GCGC | 1 cut(s) | 21 |
| Ksp22I | TGATCA | 1 cut(s) | 1048 |
| Kzo9I | GATC | 9 cut(s) | 30, 51, 124, 629, 633, 892, 1040, 1048, 1105 |
| LguI | GCTCTTC | 1 cut(s) | 1083 |
| LmnI | GCTCC | 2 cut(s) | 205, 658 |
| Lsp1109I | GCAGC | 6 cut(s) | 178, 350, 593, 661, 713, 1080 |
| LweI | GCATC | 4 cut(s) | 336, 439, 743, 1016 |
| MaeII | ACGT | 3 cut(s) | 99, 589, 715 |
| MaeIII | GTNAC | 1 cut(s) | 679 |
| MalI | GATC | 9 cut(s) | 32, 53, 126, 631, 635, 894, 1042, 1050, 1107 |
| MboI | GATC | 9 cut(s) | 30, 51, 124, 629, 633, 892, 1040, 1048, 1105 |
| MboII | GAAGA | 9 cut(s) | 61, 81, 281, 851, 860, 908, 968, 1012, 1100 |
| MflI | RGATCY | 1 cut(s) | 1040 |
| MhlI | GDGCHC | 1 cut(s) | 968 |
| MluCI | AATT | 9 cut(s) | 305, 357, 420, 690, 804, 822, 959, 978, 1176 |
| MlyI | GAGTC | 3 cut(s) | 323, 362, 1076 |
| MmeI | TCCRAC | 2 cut(s) | 60, 117 |
| MseI | TTAA | 4 cut(s) | 360, 560, 764, 845 |
| MspA1I | CMGCKG | 1 cut(s) | 43 |
| MspI | CCGG | 2 cut(s) | 163, 209 |
| MspR9I | CCNGG | 2 cut(s) | 163, 188 |
| Mva1269I | GAATGC | 1 cut(s) | 463 |
| MvaI | CCWGG | 1 cut(s) | 188 |
| MvnI | CGCG | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 64, 172, 205, 236, 458, 671 |
| NciI | CCSGG | 1 cut(s) | 163 |
| NdeII | GATC | 9 cut(s) | 30, 51, 124, 629, 633, 892, 1040, 1048, 1105 |
| NlaIII | CATG | 4 cut(s) | 512, 687, 1159, 1174 |
| NlaIV | GGNNCC | 2 cut(s) | 207, 709 |
| NmeAIII | GCCGAG | 1 cut(s) | 1021 |
| NruI | TCGCGA | 1 cut(s) | 17 |
| NspI | RCATGY | 1 cut(s) | 687 |
| NspV | TTCGAA | 1 cut(s) | 267 |
| PaeR7I | CTCGAG | 1 cut(s) | 437 |
| PciI | ACATGT | 1 cut(s) | 683 |
| PciSI | GCTCTTC | 1 cut(s) | 1083 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 264, 450 |
| PctI | GAATGC | 1 cut(s) | 463 |
| PfeI | GAWTC | 1 cut(s) | 250 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 193 |
| PkrI | GCNGC | 8 cut(s) | 45, 168, 340, 583, 676, 700, 703, 1095 |
| PleI | GAGTC | 3 cut(s) | 322, 362, 1076 |
| PpsI | GAGTC | 3 cut(s) | 322, 362, 1076 |
| PpuMI | RGGWCCY | 1 cut(s) | 707 |
| PscI | ACATGT | 1 cut(s) | 683 |
| PshBI | ATTAAT | 1 cut(s) | 360 |
| Psp1406I | AACGTT | 1 cut(s) | 715 |
| Psp5II | RGGWCCY | 1 cut(s) | 707 |
| Psp6I | CCWGG | 1 cut(s) | 186 |
| PspFI | CCCAGC | 1 cut(s) | 973 |
| PspGI | CCWGG | 1 cut(s) | 186 |
| PspN4I | GGNNCC | 2 cut(s) | 207, 709 |
| PspPI | GGNCC | 1 cut(s) | 707 |
| PspPPI | RGGWCCY | 1 cut(s) | 707 |
| PstI | CTGCAG | 1 cut(s) | 679 |
| PsuI | RGATCY | 1 cut(s) | 1040 |
| RruI | TCGCGA | 1 cut(s) | 17 |
| RsaI | GTAC | 5 cut(s) | 62, 311, 530, 688, 740 |
| RsaNI | GTAC | 5 cut(s) | 61, 310, 529, 687, 739 |
| SapI | GCTCTTC | 1 cut(s) | 1083 |
| SaqAI | TTAA | 4 cut(s) | 360, 560, 764, 845 |
| SatI | GCNGC | 8 cut(s) | 44, 167, 339, 582, 675, 699, 702, 1094 |
| Sau3AI | GATC | 9 cut(s) | 30, 51, 124, 629, 633, 892, 1040, 1048, 1105 |
| Sau96I | GGNCC | 1 cut(s) | 707 |
| SchI | GAGTC | 3 cut(s) | 323, 362, 1076 |
| ScrFI | CCNGG | 2 cut(s) | 163, 188 |
| SduI | GDGCHC | 1 cut(s) | 968 |
| SfaNI | GCATC | 4 cut(s) | 336, 439, 743, 1016 |
| SfcI | CTRYAG | 1 cut(s) | 675 |
| Sfr274I | CTCGAG | 1 cut(s) | 437 |
| SfuI | TTCGAA | 1 cut(s) | 267 |
| SinI | GGWCC | 1 cut(s) | 707 |
| SlaI | CTCGAG | 1 cut(s) | 437 |
| SmlI | CTYRAG | 1 cut(s) | 437 |
| SmoI | CTYRAG | 1 cut(s) | 437 |
| Sse9I | AATT | 9 cut(s) | 305, 357, 420, 690, 804, 822, 959, 978, 1176 |
| SsiI | CCGC | 4 cut(s) | 43, 199, 302, 699 |
| StyD4I | CCNGG | 2 cut(s) | 161, 186 |
| TaaI | ACNGT | 3 cut(s) | 82, 886, 1101 |
| TaiI | ACGT | 3 cut(s) | 102, 592, 718 |
| TaqI | TCGA | 6 cut(s) | 54, 123, 267, 366, 438, 632 |
| TasI | AATT | 9 cut(s) | 305, 357, 420, 690, 804, 822, 959, 978, 1176 |
| TatI | WGTACW | 4 cut(s) | 60, 528, 686, 738 |
| TauI | GCSGC | 2 cut(s) | 46, 701 |
| TfiI | GAWTC | 1 cut(s) | 250 |
| Tru1I | TTAA | 4 cut(s) | 360, 560, 764, 845 |
| Tru9I | TTAA | 4 cut(s) | 360, 560, 764, 845 |
| TscAI | CASTG | 3 cut(s) | 358, 660, 1106 |
| TseI | GCWGC | 6 cut(s) | 166, 338, 581, 674, 701, 1093 |
| TspDTI | ATGAA | 5 cut(s) | 109, 252, 464, 474, 525 |
| TspGWI | ACGGA | 1 cut(s) | 138 |
| TspRI | CASTG | 3 cut(s) | 358, 660, 1106 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 193 |
| VpaK11BI | GGWCC | 1 cut(s) | 707 |
| VspI | ATTAAT | 1 cut(s) | 360 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1127 |
| XapI | RAATTY | 1 cut(s) | 804 |
| XceI | RCATGY | 1 cut(s) | 687 |
| XhoI | CTCGAG | 1 cut(s) | 437 |
| ZraI | GACGTC | 1 cut(s) | 100 |