Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Forward (+)

81225064 .. 81227484

Gene Structure 2421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53449

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCCTCCAAGCGCATCTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACTTCCTGCAGCGCCGGAGGTGTATTCCTCATTACCATTCATTTCCCTCCTGACTATCCTTTCAAACCACCTAAGGATGATGATGCTGTCAATGCAGAAGCATTTATTAATAAAGCTTCATTCCTGGTTAGCAGCAGTCAGCATGAAGTATTGAATTTGCAGTATAAGGTTTGTTATGCAAGGATTTTAGATTTAAAGAGGAAGTTCTTGGAAGCAGCATTATGTTATTATGACATTTCTCAGATTGAGAAGAGGCAAATAGGAGATGAAGAGATTGCTGAGGATGCCTTGGAGCAAGCCTTATCTGCTGCAGTTACATGCACAATTTTGGCCGCTGCAGGACCACAACGTTCCCGTGTTCTTGCCACTTTGTACAAAGATGAGCGATGCTCAAAACTGAAAGTTTATCCAATACTTCAAAAGGTGTATTTGGAGAGAATTTTAAGGAAACCAGAAATTGATGCATTTGCTGAAGAGTTGAAGCCGCATCAGAAAGCACTTCTGCCAGACAATTTTATGGTGTTAGATCGTGCAATGATTGAACATAATCTTCTCAGTGCCAGCAAACTTTACACCAATATAAGTTTTGATGAGTTGGGAACCTTGCTGGGAATTGAGCCTCCAAAGGCTGAGAAGATTGCTTCAAGAATTATATATGAGGACAGAATGAGGGGATCTATTGATCAGGTGGAAGCTGTCATACATTTTGAAGATGATACTGAAGAGCTGCAACAATGGGATCAGCAGGTAAATTCAGTGGTAGTGTCAGAAGTCAAATTCTTACATATTTCATTTCAAAAACTTAATGACTACCCTAAACCCTATTTGGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

296

Amino Acids

33.75

Weight (kDa)

5.31

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	44 - 101	6.4e-07	PSMD12/CSN4, N-terminal
PCI	PF01399	182 - 256	6.2e-17	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	790
AciI	CCGC	2 cut(s)	387, 539
AclI	AACGTT	1 cut(s)	403
AclWI	GGATC	4 cut(s)	41, 54, 736, 801
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	4 cut(s)	208, 492, 805, 830
AcuI	CTGAAG	2 cut(s)	546, 795
AfaI	GTAC	1 cut(s)	428
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	9 cut(s)	22, 118, 208, 473, 535, 596, 699, 764, 851
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	28, 170, 749, 781
AluI	AGCT	4 cut(s)	28, 170, 749, 781
AlwI	GGATC	4 cut(s)	41, 54, 736, 801
AoxI	GGCC	2 cut(s)	3, 384
ApeKI	GCWGC	6 cut(s)	63, 186, 269, 362, 389, 781
ApoI	RAATTY	4 cut(s)	208, 492, 805, 830
AseI	ATTAAT	1 cut(s)	162
AspLEI	GCGC	2 cut(s)	15, 68
AspS9I	GGNCC	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	6 cut(s)	75, 198, 281, 349, 376, 768
BciT130I	CCWGG	1 cut(s)	179
BclI	TGATCA	1 cut(s)	736
BfmI	CTRYAG	3 cut(s)	61, 363, 390
BfoI	RGCGCY	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	790
BisI	GCNGC	8 cut(s)	64, 187, 270, 363, 387, 390, 539, 782
BlsI	GCNGC	8 cut(s)	65, 188, 271, 364, 388, 391, 540, 783
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	48, 655
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	6 cut(s)	24, 127, 328, 431, 505, 550
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
Bpu10I	CCTNAGC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	342
Bse21I	CCTNAGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	136, 343, 889
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	4 cut(s)	308, 324, 622, 675
BseXI	GCAGC	6 cut(s)	75, 198, 281, 349, 376, 768
BseYI	CCCAGC	1 cut(s)	661
BshFI	GGCC	2 cut(s)	5, 386
BsiSI	CCGG	1 cut(s)	69
BsnI	GGCC	2 cut(s)	5, 386
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	46, 580, 728, 736, 793
BspACI	CCGC	2 cut(s)	387, 539
BspANI	GGCC	2 cut(s)	5, 386
BspCNI	CTCAG	4 cut(s)	307, 325, 621, 676
BspLI	GGNNCC	2 cut(s)	48, 655
BspMAI	CTGCAG	3 cut(s)	65, 367, 394
BspMI	ACCTGC	1 cut(s)	790
BspPI	GGATC	4 cut(s)	41, 54, 736, 801
BspQI	GCTCTTC	1 cut(s)	771
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	594
BsrGI	TGTACA	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	5 cut(s)	46, 580, 728, 736, 793
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	179
Bst6I	CTCTTC	4 cut(s)	299, 318, 522, 771
BstAFI	CTTAAG	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	351, 616
BstDEI	CTNAG	5 cut(s)	126, 294, 333, 608, 684
BstF5I	GGATG	3 cut(s)	136, 343, 889
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	2 cut(s)	15, 68
BstKTI	GATC	5 cut(s)	49, 583, 731, 739, 796
BstMBI	GATC	5 cut(s)	46, 580, 728, 736, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 338, 359
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	3 cut(s)	61, 363, 390
BstV1I	GCAGC	6 cut(s)	75, 198, 281, 349, 376, 768
BstX2I	RGATCY	2 cut(s)	46, 728
BstYI	RGATCY	2 cut(s)	46, 728
Bsu36I	CCTNAGG	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	5, 386
BtgZI	GCGATG	1 cut(s)	454
BtsCI	GGATG	3 cut(s)	136, 343, 889
BtsIMutI	CAGTG	2 cut(s)	616, 816
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	2 cut(s)	351, 616
CfoI	GCGC	2 cut(s)	15, 68
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	2 cut(s)	197, 372
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	5 cut(s)	126, 294, 333, 608, 684
DpnI	GATC	5 cut(s)	48, 582, 730, 738, 795
DpnII	GATC	5 cut(s)	46, 580, 728, 736, 793
DraI	TTTAAA	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	4 cut(s)	299, 318, 522, 771
EarI	CTCTTC	4 cut(s)	299, 318, 522, 771
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	2 cut(s)	546, 795
Eco81I	CCTNAGG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	200, 375
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	2 cut(s)	196, 371
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	8 cut(s)	64, 187, 270, 363, 387, 390, 539, 782
FokI	GGATG	2 cut(s)	143, 350
Fsp4HI	GCNGC	8 cut(s)	64, 187, 270, 363, 387, 390, 539, 782
GlaI	GCGC	2 cut(s)	14, 67
GluI	GCNGC	8 cut(s)	64, 187, 270, 363, 387, 390, 539, 782
GsaI	CCCAGC	1 cut(s)	665
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	5, 386
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	2 cut(s)	15, 68
Hin1II	CATG	2 cut(s)	200, 375
Hin6I	GCGC	2 cut(s)	13, 66
HinP1I	GCGC	2 cut(s)	13, 66
HindIII	AAGCTT	1 cut(s)	168
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	297, 546, 823
Hpy188III	TCNNGA	3 cut(s)	19, 104, 699
HpyAV	CCTTC	2 cut(s)	16, 37
HpyCH4IV	ACGT	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 338, 359
HpyF3I	CTNAG	5 cut(s)	126, 294, 333, 608, 684
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	2 cut(s)	200, 375
HspAI	GCGC	2 cut(s)	13, 66
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	46, 580, 728, 736, 793
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	2 cut(s)	25, 346
Lsp1109I	GCAGC	6 cut(s)	75, 198, 281, 349, 376, 768
LweI	GCATC	6 cut(s)	24, 127, 328, 431, 505, 550
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	5 cut(s)	48, 582, 730, 738, 795
MboI	GATC	5 cut(s)	46, 580, 728, 736, 793
MboII	GAAGA	7 cut(s)	316, 335, 539, 596, 700, 776, 788
MflI	RGATCY	2 cut(s)	46, 728
MluCI	AATT	9 cut(s)	208, 378, 492, 510, 565, 666, 702, 805, 830
Mph1103I	ATGCAT	1 cut(s)	520
MseI	TTAA	5 cut(s)	30, 162, 248, 497, 858
MspA1I	CMGCKG	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	29
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	146, 338, 359
NdeII	GATC	5 cut(s)	46, 580, 728, 736, 793
NlaIII	CATG	2 cut(s)	200, 375
NlaIV	GGNNCC	2 cut(s)	48, 655
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	771
PkrI	GCNGC	8 cut(s)	65, 188, 271, 364, 388, 391, 540, 783
PshBI	ATTAAT	1 cut(s)	162
Psp1406I	AACGTT	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	48, 655
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	3 cut(s)	65, 367, 394
PsuI	RGATCY	2 cut(s)	46, 728
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	5 cut(s)	30, 162, 248, 497, 858
SatI	GCNGC	8 cut(s)	64, 187, 270, 363, 387, 390, 539, 782
Sau3AI	GATC	5 cut(s)	46, 580, 728, 736, 793
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	179
SfaNI	GCATC	6 cut(s)	24, 127, 328, 431, 505, 550
SfcI	CTRYAG	3 cut(s)	61, 363, 390
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	9 cut(s)	208, 378, 492, 510, 565, 666, 702, 805, 830
SsiI	CCGC	2 cut(s)	387, 539
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	406
TasI	AATT	9 cut(s)	208, 378, 492, 510, 565, 666, 702, 805, 830
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	2 cut(s)	389, 541
Tru1I	TTAA	5 cut(s)	30, 162, 248, 497, 858
Tru9I	TTAA	5 cut(s)	30, 162, 248, 497, 858
TscAI	CASTG	2 cut(s)	616, 816
TseI	GCWGC	6 cut(s)	63, 186, 269, 362, 389, 781
TspDTI	ATGAA	5 cut(s)	83, 162, 213, 336, 834
TspRI	CASTG	2 cut(s)	616, 816
Vha464I	CTTAAG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	395
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	4 cut(s)	208, 492, 805, 830
XceI	RCATGY	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.