Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Reverse (-)

34358483 .. 34362371

Gene Structure 3889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G381600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAGAGTGCCTTCGCGAGCGCCTCTGCGATCTCTGACCAGAGGCAAAAGATCGAGCAGTACAAGCACATTCTCTCCACCGTGATTTCCTCAAGCGACGTCGTTCAGGCCAAGAAGTTCATCGATCACATGTTGTCGGAGGATGTTCCTTTGGTGGTTTCGCGGCAACTTTTGCAGAATTTTGCTCAAGAGTTAGGGCGGTGGGAGCCGGAGACCCAGAAGGAGATTGCCCATTATGCCCTTTCTCAGATTCGAGCCGTTTCATTTGAAGAGCAGGTGCTAATCATAAGAGAGAAACTAGCGGAATTGTACGAGTCTGAGCAACAATGGTCAAAAGCAGCTCAAATGCTTAGTGGCATTAATCTAGACTCTGGAATGAGAGTGGTTGATGATACATTCAAGTTATCAAAGTGTGTCCAAATTGCTCGCCTATATCTTGAGGATGATGATGCAGTCAATGCAGAAGCTTTTATTCATAAAGCTTCATTCTTGATTACCAATATTCAGCATGAAGTTTTGAATTTACAGTATAAGGTTTGTTATGCGAGGATTTTAGATTTAAAGAGGAGGTTCTTGGAGGCAGCATTACGTTATTATGAATTTTCTCAGATTGAAAAGAGGCAAATAGGAGATGAAGAGATTGATGAGGAAGCACTGGAGCAAGCTTTGTCTGCTGCAGTTACGTGTACAATTTTGGCCGCCGCAGGACCCCAACGTTCTCGTGTTCTTGCCACTTTGTACAAAGATGAGAGATGCTCAAAATTAAAAATTTATCCAATACTACAAAAGGTGTATTTGGAGAGAATTTTGAGGAAACCAGAAATTGATGCATTTTCTGAAGAGTTAAAGCCGCATCAGAAAGCACTTCTGCCGGACAACTTTACAGTGTTAGATCGTGCAATGATTGAACATAATCTTCTCAGTGCCAGCAAACTTTACACAAATATAAGTTTTGATGAGTTGGGCACTTTGCTGGGAATTGAACCTCATAAGGCTGAGAAGATTGCATCAAAAATGATCTATGAGGACAGAATGAGGGGATCTATTGATCAGGTGGAAGCTGTCATACATTTTGAGGACGACACTGAAGAGCTGCAACAATGGGATCAGCAGATTGTTGGCCTGTGTCAAGCGCTCAATGACGTATTGGACAGCATGGCAAAGAAGGGCTTGCCAATTCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

396

Amino Acids

45.18

Weight (kDa)

5.1

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
AatII	GACGTC	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	265
AccII	CGCG	2 cut(s)	17, 163
AciI	CCGC	6 cut(s)	163, 199, 302, 699, 702, 851
AclI	AACGTT	1 cut(s)	715
AclWI	GGATC	2 cut(s)	1048, 1113
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	5 cut(s)	178, 520, 599, 768, 804
AcuI	CTGAAG	2 cut(s)	858, 1107
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	4 cut(s)	62, 311, 688, 740
AfeI	AGCGCT	1 cut(s)	1134
AflIII	ACRYGT	2 cut(s)	129, 683
AgsI	TTSAA	6 cut(s)	269, 400, 520, 614, 908, 983
AluBI	AGCT	6 cut(s)	341, 467, 482, 665, 1061, 1093
AluI	AGCT	6 cut(s)	341, 467, 482, 665, 1061, 1093
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	1048, 1113
Aor51HI	AGCGCT	1 cut(s)	1134
AoxI	GGCC	3 cut(s)	108, 696, 1120
ApeKI	GCWGC	4 cut(s)	338, 581, 674, 1093
ApoI	RAATTY	5 cut(s)	178, 520, 599, 768, 804
AseI	ATTAAT	1 cut(s)	360
AspLEI	GCGC	2 cut(s)	23, 1135
AspS9I	GGNCC	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	968
BarI	GAAGNNNNNNTAC	2 cut(s)	1050, 1082
BauI	CACGAG	1 cut(s)	720
BbvI	GCAGC	4 cut(s)	350, 593, 661, 1080
BceAI	ACGGC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	1048
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	299, 365
BfmI	CTRYAG	1 cut(s)	675
BfoI	RGCGCY	2 cut(s)	24, 1136
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	8 cut(s)	164, 339, 582, 675, 699, 702, 851, 1094
BlsI	GCNGC	8 cut(s)	165, 340, 583, 676, 700, 703, 852, 1095
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	2 cut(s)	207, 709
BmsI	GCATC	5 cut(s)	439, 743, 817, 862, 1016
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
BpmI	CTGGAG	1 cut(s)	677
BpuEI	CTTGAG	3 cut(s)	76, 171, 458
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	906
BseCI	ATCGAT	1 cut(s)	123
BseGI	GGATG	2 cut(s)	148, 448
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	5 cut(s)	260, 309, 620, 934, 987
BseNI	ACTGG	1 cut(s)	660
BseRI	GAGGAG	1 cut(s)	580
BseSI	GKGCMC	1 cut(s)	968
BseXI	GCAGC	4 cut(s)	350, 593, 661, 1080
BseYI	CCCAGC	1 cut(s)	973
Bsh1236I	CGCG	2 cut(s)	17, 163
BshFI	GGCC	3 cut(s)	110, 698, 1122
BshVI	ATCGAT	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	209, 872
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	110, 698, 1122
Bso31I	GGTCTC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	968
Bsp1407I	TGTACA	2 cut(s)	686, 738
Bsp143I	GATC	8 cut(s)	30, 51, 124, 892, 1017, 1040, 1048, 1105
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	6 cut(s)	163, 199, 302, 699, 702, 851
BspANI	GGCC	3 cut(s)	110, 698, 1122
BspCNI	CTCAG	5 cut(s)	259, 310, 619, 933, 988
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	17, 163
BspLI	GGNNCC	2 cut(s)	207, 709
BspMAI	CTGCAG	1 cut(s)	679
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	2 cut(s)	1048, 1113
BspQI	GCTCTTC	2 cut(s)	264, 1083
BspTNI	GGTCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	906
BsrGI	TGTACA	2 cut(s)	686, 738
BsrI	ACTGG	1 cut(s)	660
BssMI	GATC	8 cut(s)	30, 51, 124, 892, 1017, 1040, 1048, 1105
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	720
Bst4CI	ACNGT	3 cut(s)	82, 528, 886
Bst6I	CTCTTC	4 cut(s)	264, 630, 834, 1083
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	2 cut(s)	172, 458
BstAUI	TGTACA	2 cut(s)	686, 738
BstBAI	YACGTR	1 cut(s)	684
BstC8I	GCNNGC	5 cut(s)	19, 427, 663, 928, 1172
BstDEI	CTNAG	6 cut(s)	246, 318, 350, 606, 920, 996
BstF5I	GGATG	2 cut(s)	148, 448
BstFNI	CGCG	2 cut(s)	17, 163
BstH2I	RGCGCY	2 cut(s)	24, 1136
BstHHI	GCGC	2 cut(s)	23, 1135
BstKTI	GATC	8 cut(s)	33, 54, 127, 895, 1020, 1043, 1051, 1108
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	8 cut(s)	30, 51, 124, 892, 1017, 1040, 1048, 1105
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 172, 205, 236, 458, 671
BstNSI	RCATGY	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	968
BstUI	CGCG	2 cut(s)	17, 163
BstV1I	GCAGC	4 cut(s)	350, 593, 661, 1080
BstX2I	RGATCY	1 cut(s)	1040
BstYI	RGATCY	1 cut(s)	1040
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	110, 698, 1122
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	148, 448
BtsIMutI	CAGTG	4 cut(s)	653, 891, 928, 1083
BtuMI	TCGCGA	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	5 cut(s)	19, 427, 663, 928, 1172
CfoI	GCGC	2 cut(s)	23, 1135
Cfr13I	GGNCC	1 cut(s)	707
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	4 cut(s)	61, 310, 687, 739
CviAII	CATG	3 cut(s)	130, 509, 1156
CviQI	GTAC	4 cut(s)	61, 310, 687, 739
DdeI	CTNAG	6 cut(s)	246, 318, 350, 606, 920, 996
DpnI	GATC	8 cut(s)	32, 53, 126, 894, 1019, 1042, 1050, 1107
DpnII	GATC	8 cut(s)	30, 51, 124, 892, 1017, 1040, 1048, 1105
DraI	TTTAAA	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	4 cut(s)	264, 630, 834, 1083
EarI	CTCTTC	4 cut(s)	264, 630, 834, 1083
Eco31I	GGTCTC	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	707
Eco47III	AGCGCT	1 cut(s)	1134
Eco57I	CTGAAG	2 cut(s)	858, 1107
EcoO109I	RGGNCCY	1 cut(s)	707
EcoT22I	ATGCAT	1 cut(s)	832
FaeI	CATG	3 cut(s)	133, 512, 1159
FalI	AAGNNNNNCTT	2 cut(s)	1154, 1186
FatI	CATG	3 cut(s)	129, 508, 1155
FbaI	TGATCA	1 cut(s)	1048
Fnu4HI	GCNGC	8 cut(s)	164, 339, 582, 675, 699, 702, 851, 1094
FokI	GGATG	2 cut(s)	155, 455
Fsp4HI	GCNGC	8 cut(s)	164, 339, 582, 675, 699, 702, 851, 1094
FspBI	CTAG	2 cut(s)	299, 365
GlaI	GCGC	2 cut(s)	22, 1134
GluI	GCNGC	8 cut(s)	164, 339, 582, 675, 699, 702, 851, 1094
GsaI	CCCAGC	1 cut(s)	977
GsuI	CTGGAG	1 cut(s)	677
HaeII	RGCGCY	2 cut(s)	24, 1136
HaeIII	GGCC	3 cut(s)	110, 698, 1122
HapII	CCGG	2 cut(s)	209, 872
HhaI	GCGC	2 cut(s)	23, 1135
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	133, 512, 1159
Hin6I	GCGC	2 cut(s)	21, 1133
HinP1I	GCGC	2 cut(s)	21, 1133
HindIII	AAGCTT	3 cut(s)	465, 480, 663
HinfI	GANTC	3 cut(s)	250, 314, 368
HpaII	CCGG	2 cut(s)	209, 872
Hpy166II	GTNNAC	1 cut(s)	687
Hpy188I	TCNGA	8 cut(s)	37, 139, 249, 319, 609, 838, 858, 1187
Hpy188III	TCNNGA	6 cut(s)	16, 188, 365, 372, 437, 490
Hpy8I	GTNNAC	1 cut(s)	687
Hpy99I	CGWCG	2 cut(s)	101, 104
HpyAV	CCTTC	3 cut(s)	22, 214, 1159
HpyCH4III	ACNGT	3 cut(s)	82, 528, 886
HpyCH4IV	ACGT	5 cut(s)	99, 589, 683, 715, 1143
HpyCH4V	TGCA	8 cut(s)	175, 452, 461, 677, 830, 899, 1007, 1096
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 172, 205, 236, 458, 671
HpyF3I	CTNAG	6 cut(s)	246, 318, 350, 606, 920, 996
HpySE526I	ACGT	5 cut(s)	99, 589, 683, 715, 1143
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	133, 512, 1159
HspAI	GCGC	2 cut(s)	21, 1133
Ksp22I	TGATCA	1 cut(s)	1048
Kzo9I	GATC	8 cut(s)	30, 51, 124, 892, 1017, 1040, 1048, 1105
LguI	GCTCTTC	2 cut(s)	264, 1083
LmnI	GCTCC	2 cut(s)	205, 658
Lsp1109I	GCAGC	4 cut(s)	350, 593, 661, 1080
LweI	GCATC	5 cut(s)	439, 743, 817, 862, 1016
MaeI	CTAG	2 cut(s)	299, 365
MaeII	ACGT	5 cut(s)	99, 589, 683, 715, 1143
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	8 cut(s)	32, 53, 126, 894, 1019, 1042, 1050, 1107
MboI	GATC	8 cut(s)	30, 51, 124, 892, 1017, 1040, 1048, 1105
MboII	GAAGA	6 cut(s)	281, 647, 851, 908, 1012, 1100
MflI	RGATCY	1 cut(s)	1040
MhlI	GDGCHC	1 cut(s)	968
MlyI	GAGTC	2 cut(s)	323, 362
MmeI	TCCRAC	1 cut(s)	117
Mph1103I	ATGCAT	1 cut(s)	832
MseI	TTAA	4 cut(s)	360, 560, 764, 845
MspI	CCGG	2 cut(s)	209, 872
MvnI	CGCG	2 cut(s)	17, 163
MwoI	GCNNNNNNNGC	6 cut(s)	64, 172, 205, 236, 458, 671
NdeII	GATC	8 cut(s)	30, 51, 124, 892, 1017, 1040, 1048, 1105
NlaIII	CATG	3 cut(s)	133, 512, 1159
NlaIV	GGNNCC	2 cut(s)	207, 709
NruI	TCGCGA	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	832
NspI	RCATGY	1 cut(s)	133
PaqCI	CACCTGC	1 cut(s)	265
PciI	ACATGT	1 cut(s)	129
PciSI	GCTCTTC	2 cut(s)	264, 1083
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	8 cut(s)	165, 340, 583, 676, 700, 703, 852, 1095
PleI	GAGTC	2 cut(s)	322, 362
PpsI	GAGTC	2 cut(s)	322, 362
Ppu21I	YACGTR	1 cut(s)	684
PpuMI	RGGWCCY	1 cut(s)	707
PscI	ACATGT	1 cut(s)	129
PshBI	ATTAAT	1 cut(s)	360
Psp1406I	AACGTT	1 cut(s)	715
Psp5II	RGGWCCY	1 cut(s)	707
PspFI	CCCAGC	1 cut(s)	973
PspN4I	GGNNCC	2 cut(s)	207, 709
PspPI	GGNCC	1 cut(s)	707
PspPPI	RGGWCCY	1 cut(s)	707
PstI	CTGCAG	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	1040
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	4 cut(s)	62, 311, 688, 740
RsaNI	GTAC	4 cut(s)	61, 310, 687, 739
SapI	GCTCTTC	2 cut(s)	264, 1083
SaqAI	TTAA	4 cut(s)	360, 560, 764, 845
SatI	GCNGC	8 cut(s)	164, 339, 582, 675, 699, 702, 851, 1094
Sau3AI	GATC	8 cut(s)	30, 51, 124, 892, 1017, 1040, 1048, 1105
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	2 cut(s)	323, 362
SduI	GDGCHC	1 cut(s)	968
SfaNI	GCATC	5 cut(s)	439, 743, 817, 862, 1016
SfcI	CTRYAG	1 cut(s)	675
SinI	GGWCC	1 cut(s)	707
SmlI	CTYRAG	3 cut(s)	91, 186, 437
SmoI	CTYRAG	3 cut(s)	91, 186, 437
SsiI	CCGC	6 cut(s)	163, 199, 302, 699, 702, 851
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	2 cut(s)	299, 365
TaaI	ACNGT	3 cut(s)	82, 528, 886
TaiI	ACGT	5 cut(s)	102, 592, 686, 718, 1146
TaqI	TCGA	3 cut(s)	54, 123, 253
TatI	WGTACW	3 cut(s)	60, 686, 738
TauI	GCSGC	4 cut(s)	166, 701, 704, 853
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	4 cut(s)	360, 560, 764, 845
Tru9I	TTAA	4 cut(s)	360, 560, 764, 845
TscAI	CASTG	4 cut(s)	660, 891, 928, 1090
TseI	GCWGC	4 cut(s)	338, 581, 674, 1093
TspDTI	ATGAA	7 cut(s)	109, 252, 464, 474, 525, 612, 648
TspRI	CASTG	4 cut(s)	660, 891, 928, 1090
VpaK11BI	GGWCC	1 cut(s)	707
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	5 cut(s)	178, 520, 599, 768, 804
XbaI	TCTAGA	1 cut(s)	364
XceI	RCATGY	1 cut(s)	133
XspI	CTAG	2 cut(s)	299, 365
ZraI	GACGTC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.