MD15G1029900.v1.1

COP9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
1838034 .. 1841988
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1029900.v1.1.491

Sequence Viewer

Length: 1212 bp
ATGGAGAGTGCCTTCGCGAACGCCTCTGCGATCTCCGACCAGCGGCAGAAGATCGAGCAGTACAAGCACATTCTCTCCACCGTGATTTCTTCAAGCGACGTCGTTCAGGCCAAGAAGTTCATCGATCACTTGTTATCGGATGATGTCCCGTTGGTGGTTTCCCGGCAGCTTTTGCAGACTTTTGCCCAGGAGTTGGGGCGGTGGGAGCCGGAGACCCAGAAGGAGATTGCCCACTATGCCCTTTCTCAGATTCGTGTCGTTTCATTCGAAGAACAGGTGATGATAATAAGAGAGAAAGTTGCGGAATTGTACGAGTCTGAGCAACAATGGTCAAAAGCAGCTCAGATGCTCAGTGGAATTAATCTCGACTCAGGAACGAGGTCCGATAGTAGAATACTGCTGTTAGCCGTTGATGACACATTCAAGTTATCAAAATGTGTCCAAATTGCTCGCCTATATCTCGAGGACGATGATGCCGTGAATGCAGAAGCTTTTATTCATAAAGCTTCATTCTTGATTACAACTATTCAGCATGAAGTTTTGACTTTAGAGTACAAGATTTGTTATGCAAGGATTTTAGATTTAAAGAGAAGGTTCTCGGAAGCAGCATTACGTTATTATGATTTTTCTCAGATTGAAAAGAGGCAAATAGGAGATCAAGAGATTGATGAAGAAGCACTGGAGCAAGCTCTATCTGCTGCAGTTACATGTACAATTTTAGCCGCAGCAGGACCCCAACGTTCTCGTGTTCTTGCTACTTTGTACAAGGATGAGCGATGCTCAAAGTTAAAAATATATCCAATACTACAAAAGGTATATTTGGAGAGAATTTTGAGGAAACCAGAAATTGAAGCATTTGCTGAAGAGTTAAAGCCACATCAGAAAGCACTTCTTCCAGACAACTTTACGGTGTTAGATCGTGCAATGATTGAACATAATCTTCTGAGTGCCAGCAAACTTTACACCAATATAAGTTTTGAAGAATTGGGCACTTTGCTGGGAATTGAGCCTCATAAGGCCGAGAAGATTGCATCAAAAATGATATATGAGGACAGAATGAGGGGATCTATTGATCAGGTGGAAGCTGTCATACATTTTCAGGATGACTCTGAAGAGCTGCAACAATGGGATCAGCAGATTGTTGGCCTGTGTCAGGCTCTCAATGACGTCTTGGATAGCATGGCAAAGAAGGGCATGGCAATTCCCGTTTGA

Protein Analysis

404

Amino Acids

45.97

Weight (kDa)

5.15

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSMD12-CSN4_N PF22241 12 - 213 6.2e-23 PSMD12/CSN4, N-terminal
PCI PF01399 294 - 367 2.5e-18 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 102, 1170
AccB7I CCANNNNNTGG 1 cut(s) 193
AccII CGCG 1 cut(s) 17
AciI CCGC 4 cut(s) 43, 199, 302, 723
AclI AACGTT 1 cut(s) 739
AclWI GGATC 2 cut(s) 1072, 1137
AcsI RAATTY 1 cut(s) 828
AcuI CTGAAG 2 cut(s) 882, 1131
AcyI GRCGYC 2 cut(s) 99, 1167
AfaI GTAC 5 cut(s) 62, 311, 554, 712, 764
AfiI CCNNNNNNNGG 4 cut(s) 42, 154, 193, 1153
AflIII ACRYGT 1 cut(s) 707
AgsI TTSAA 6 cut(s) 93, 424, 638, 851, 932, 980
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 7 cut(s) 169, 341, 491, 506, 689, 1085, 1117
AluI AGCT 7 cut(s) 169, 341, 491, 506, 689, 1085, 1117
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 1072, 1137
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 3 cut(s) 108, 1017, 1144
ApeKI GCWGC 6 cut(s) 166, 338, 605, 698, 725, 1117
ApoI RAATTY 1 cut(s) 828
AseI ATTAAT 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 381, 731
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 267
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 2 cut(s) 381, 731
BaeGI GKGCMC 1 cut(s) 992
BarI GAAGNNNNNNTAC 4 cut(s) 594, 626, 1074, 1106
BauI CACGAG 1 cut(s) 744
BbvI GCAGC 6 cut(s) 178, 350, 617, 685, 737, 1104
BceAI ACGGC 2 cut(s) 392, 461
BcgI CGANNNNNNTGC 2 cut(s) 1010, 1044
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 1 cut(s) 1072
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 699
BisI GCNGC 8 cut(s) 44, 167, 339, 606, 699, 723, 726, 1118
BlsI GCNGC 8 cut(s) 45, 168, 340, 607, 700, 724, 727, 1119
Bme1390I CCNGG 2 cut(s) 163, 188
Bme18I GGWCC 2 cut(s) 381, 731
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 381, 731
BmiI GGNNCC 2 cut(s) 207, 733
BmrFI CCNGG 2 cut(s) 163, 188
BmsI GCATC 4 cut(s) 336, 463, 767, 1040
BplI GAGNNNNNCTC 2 cut(s) 764, 796
BpmI CTGGAG 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 123
BsaHI GRCGYC 2 cut(s) 99, 1167
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 154, 193, 1153
Bse1I ACTGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 930
BseBI CCWGG 1 cut(s) 188
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 145, 775, 1108
BseLI CCNNNNNNNGG 4 cut(s) 42, 154, 193, 1153
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 7 cut(s) 260, 309, 356, 364, 384, 644, 935
BseNI ACTGG 1 cut(s) 684
BseSI GKGCMC 1 cut(s) 992
BseXI GCAGC 6 cut(s) 178, 350, 617, 685, 737, 1104
BseYI CCCAGC 1 cut(s) 997
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 3 cut(s) 110, 1019, 1146
BshVI ATCGAT 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 2 cut(s) 163, 209
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 4 cut(s) 42, 154, 193, 1153
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 3 cut(s) 110, 1019, 1146
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 992
Bsp1407I TGTACA 2 cut(s) 710, 762
Bsp143I GATC 8 cut(s) 30, 51, 124, 655, 916, 1064, 1072, 1129
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 4 cut(s) 43, 199, 302, 723
BspANI GGCC 3 cut(s) 110, 1019, 1146
BspCNI CTCAG 7 cut(s) 259, 310, 355, 363, 383, 643, 936
BspDI ATCGAT 1 cut(s) 123
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 207, 733
BspMAI CTGCAG 1 cut(s) 703
BspPI GGATC 2 cut(s) 1072, 1137
BspQI GCTCTTC 1 cut(s) 1107
BspT104I TTCGAA 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 930
BsrGI TGTACA 2 cut(s) 710, 762
BsrI ACTGG 1 cut(s) 684
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 8 cut(s) 30, 51, 124, 655, 916, 1064, 1072, 1129
BssNI GRCGYC 2 cut(s) 99, 1167
BssSI CACGAG 1 cut(s) 744
Bst2BI CACGAG 1 cut(s) 744
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 82, 910
Bst6I CTCTTC 2 cut(s) 858, 1107
BstACI GRCGYC 2 cut(s) 99, 1167
BstAPI GCANNNNNTGC 1 cut(s) 172
BstAUI TGTACA 2 cut(s) 710, 762
BstBI TTCGAA 1 cut(s) 267
BstC8I GCNNGC 3 cut(s) 451, 687, 952
BstDEI CTNAG 7 cut(s) 246, 318, 342, 350, 370, 630, 944
BstENI CCTNNNNNAGG 1 cut(s) 1151
BstF5I GGATG 3 cut(s) 145, 775, 1108
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 8 cut(s) 33, 54, 127, 658, 919, 1067, 1075, 1132
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 8 cut(s) 30, 51, 124, 655, 916, 1064, 1072, 1129
BstMWI GCNNNNNNNGC 6 cut(s) 64, 172, 205, 236, 482, 695
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 2 cut(s) 161, 186
BstSFI CTRYAG 1 cut(s) 699
BstSLI GKGCMC 1 cut(s) 992
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 6 cut(s) 178, 350, 617, 685, 737, 1104
BstX2I RGATCY 1 cut(s) 1064
BstYI RGATCY 1 cut(s) 1064
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 3 cut(s) 110, 1019, 1146
BsuTUI ATCGAT 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 790
BtsCI GGATG 3 cut(s) 145, 775, 1108
BtsIMutI CAGTG 2 cut(s) 358, 677
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 3 cut(s) 451, 687, 952
Cfr13I GGNCC 2 cut(s) 381, 731
ClaI ATCGAT 1 cut(s) 123
Csp6I GTAC 5 cut(s) 61, 310, 553, 711, 763
CviAII CATG 4 cut(s) 533, 708, 1180, 1195
CviQI GTAC 5 cut(s) 61, 310, 553, 711, 763
DdeI CTNAG 7 cut(s) 246, 318, 342, 350, 370, 630, 944
DpnI GATC 8 cut(s) 32, 53, 126, 657, 918, 1066, 1074, 1131
DpnII GATC 8 cut(s) 30, 51, 124, 655, 916, 1064, 1072, 1129
DraI TTTAAA 1 cut(s) 585
Eam1104I CTCTTC 2 cut(s) 858, 1107
EarI CTCTTC 2 cut(s) 858, 1107
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 381, 731
Eco57I CTGAAG 2 cut(s) 882, 1131
Eco88I CYCGRG 1 cut(s) 461
EcoNI CCTNNNNNAGG 1 cut(s) 1151
EcoO109I RGGNCCY 1 cut(s) 731
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 4 cut(s) 536, 711, 1183, 1198
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FaqI GGGAC 1 cut(s) 131
FatI CATG 4 cut(s) 532, 707, 1179, 1194
FbaI TGATCA 1 cut(s) 1072
Fnu4HI GCNGC 8 cut(s) 44, 167, 339, 606, 699, 723, 726, 1118
FokI GGATG 3 cut(s) 152, 782, 1115
Fsp4HI GCNGC 8 cut(s) 44, 167, 339, 606, 699, 723, 726, 1118
GluI GCNGC 8 cut(s) 44, 167, 339, 606, 699, 723, 726, 1118
GsaI CCCAGC 1 cut(s) 1001
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 3 cut(s) 110, 1019, 1146
HapII CCGG 2 cut(s) 163, 209
Hin1I GRCGYC 2 cut(s) 99, 1167
Hin1II CATG 4 cut(s) 536, 711, 1183, 1198
HindIII AAGCTT 2 cut(s) 489, 504
HinfI GANTC 4 cut(s) 250, 314, 368, 1106
HpaII CCGG 2 cut(s) 163, 209
HphI GGTGA 1 cut(s) 289
Hpy188III TCNNGA 8 cut(s) 16, 365, 372, 461, 514, 659, 896, 1100
Hpy99I CGWCG 2 cut(s) 101, 104
HpyAV CCTTC 4 cut(s) 22, 214, 585, 1183
HpyCH4III ACNGT 2 cut(s) 82, 910
HpyCH4IV ACGT 4 cut(s) 99, 613, 739, 1167
HpyCH4V TGCA 7 cut(s) 175, 485, 569, 701, 923, 1031, 1120
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 172, 205, 236, 482, 695
HpyF3I CTNAG 7 cut(s) 246, 318, 342, 350, 370, 630, 944
HpySE526I ACGT 4 cut(s) 99, 613, 739, 1167
Hsp92I GRCGYC 2 cut(s) 99, 1167
Hsp92II CATG 4 cut(s) 536, 711, 1183, 1198
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 8 cut(s) 30, 51, 124, 655, 916, 1064, 1072, 1129
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 2 cut(s) 205, 682
Lsp1109I GCAGC 6 cut(s) 178, 350, 617, 685, 737, 1104
LweI GCATC 4 cut(s) 336, 463, 767, 1040
MaeII ACGT 4 cut(s) 99, 613, 739, 1167
MaeIII GTNAC 1 cut(s) 703
MalI GATC 8 cut(s) 32, 53, 126, 657, 918, 1066, 1074, 1131
MboI GATC 8 cut(s) 30, 51, 124, 655, 916, 1064, 1072, 1129
MflI RGATCY 1 cut(s) 1064
MhlI GDGCHC 1 cut(s) 992
MluCI AATT 9 cut(s) 305, 357, 444, 714, 828, 846, 983, 1002, 1200
MlyI GAGTC 3 cut(s) 323, 362, 1100
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 8 cut(s) 34, 372, 457, 636, 828, 1020, 1042, 1053
MseI TTAA 4 cut(s) 360, 584, 788, 869
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 2 cut(s) 163, 209
MspR9I CCNGG 2 cut(s) 163, 188
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 6 cut(s) 64, 172, 205, 236, 482, 695
NciI CCSGG 1 cut(s) 163
NdeII GATC 8 cut(s) 30, 51, 124, 655, 916, 1064, 1072, 1129
NlaIII CATG 4 cut(s) 536, 711, 1183, 1198
NlaIV GGNNCC 2 cut(s) 207, 733
NmeAIII GCCGAG 1 cut(s) 1045
NruI TCGCGA 1 cut(s) 17
NspI RCATGY 1 cut(s) 711
NspV TTCGAA 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 461
PciI ACATGT 1 cut(s) 707
PciSI GCTCTTC 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 474
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 8 cut(s) 45, 168, 340, 607, 700, 724, 727, 1119
PleI GAGTC 3 cut(s) 322, 362, 1100
PpsI GAGTC 3 cut(s) 322, 362, 1100
PpuMI RGGWCCY 1 cut(s) 731
PscI ACATGT 1 cut(s) 707
PshBI ATTAAT 1 cut(s) 360
Psp1406I AACGTT 1 cut(s) 739
Psp5II RGGWCCY 1 cut(s) 731
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 997
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 207, 733
PspPI GGNCC 2 cut(s) 381, 731
PspPPI RGGWCCY 1 cut(s) 731
PstI CTGCAG 1 cut(s) 703
PsuI RGATCY 1 cut(s) 1064
RruI TCGCGA 1 cut(s) 17
RsaI GTAC 5 cut(s) 62, 311, 554, 712, 764
RsaNI GTAC 5 cut(s) 61, 310, 553, 711, 763
SapI GCTCTTC 1 cut(s) 1107
SaqAI TTAA 4 cut(s) 360, 584, 788, 869
SatI GCNGC 8 cut(s) 44, 167, 339, 606, 699, 723, 726, 1118
Sau3AI GATC 8 cut(s) 30, 51, 124, 655, 916, 1064, 1072, 1129
Sau96I GGNCC 2 cut(s) 381, 731
SchI GAGTC 3 cut(s) 323, 362, 1100
ScrFI CCNGG 2 cut(s) 163, 188
SduI GDGCHC 1 cut(s) 992
SfaNI GCATC 4 cut(s) 336, 463, 767, 1040
SfcI CTRYAG 1 cut(s) 699
Sfr274I CTCGAG 1 cut(s) 461
SfuI TTCGAA 1 cut(s) 267
SinI GGWCC 2 cut(s) 381, 731
SlaI CTCGAG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 9 cut(s) 305, 357, 444, 714, 828, 846, 983, 1002, 1200
SsiI CCGC 4 cut(s) 43, 199, 302, 723
StyD4I CCNGG 2 cut(s) 161, 186
TaaI ACNGT 2 cut(s) 82, 910
TaiI ACGT 4 cut(s) 102, 616, 742, 1170
TaqI TCGA 5 cut(s) 54, 123, 267, 366, 462
TasI AATT 9 cut(s) 305, 357, 444, 714, 828, 846, 983, 1002, 1200
TatI WGTACW 4 cut(s) 60, 552, 710, 762
TauI GCSGC 2 cut(s) 46, 725
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 4 cut(s) 360, 584, 788, 869
Tru9I TTAA 4 cut(s) 360, 584, 788, 869
TscAI CASTG 2 cut(s) 358, 684
TseI GCWGC 6 cut(s) 166, 338, 605, 698, 725, 1117
TspDTI ATGAA 6 cut(s) 109, 252, 488, 498, 549, 684
TspRI CASTG 2 cut(s) 358, 684
Van91I CCANNNNNTGG 1 cut(s) 193
VpaK11BI GGWCC 2 cut(s) 381, 731
VspI ATTAAT 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 1151
XapI RAATTY 1 cut(s) 828
XceI RCATGY 1 cut(s) 711
XhoI CTCGAG 1 cut(s) 461
ZraI GACGTC 2 cut(s) 100, 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.