Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Reverse (-)

32172456 .. 32179611

Gene Structure 7156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAAGCAAATGCTTCGTGACTACGGAATCTCACAAGGTAAGTTGACCATAGTTTATGATAACTCTAGTGCTATCAATATTTCCAAAAATCTTATGATCCCAAGGGTGATCCGTGAAAATTTGACCTTTCTTTGCAATTTCAAAAAGTTGGTTAAGTTATCGCGTTTCAGATTCGAATATCTTTATTTGAAATTCGGGGATGATGATGCTGTCAATGCAGAAGCATTTATTAATAAAGCTTCATTCCTGGTTAGCAGCAGTCAGCATGAAGTATTGAATTTGCAGTATAAGGTTTGTTATGCAAGGATTTTAGATTTGAAGAGGAAGTTCTTGGAAGCAGCATTACGTTATTATGACATTTCTCAGATTGAGAAGAGGCAAATAGGAGATGAAGAGATTGATGAGGATGCCTTGGAGCAAGCCTTATCTGCTACAGTTACATGCACAATTTTGGCCGCTGCAGGACCACAACGTTCCCGTGTTCTTGCCACTTTGTACAAAGATGAGCGATGCTCAAAACTGAAAGTTTATCCAATACTTCAAAAGGTGTATTTGGAGAGAATTTTAAGGAAACCAGAAATTGATGCATTTGCTGAAGAGTTGAAGTCGCATCAGAAAGCACTTCTGCCAGACAATTTTACGGTGTTAGATCGTGCAATGATTGAACATAATCTTCTCAGTGCCAGCAAACTTTACACCAATATAAGTTTTGATGAGTTGGGAACCTTGCTGGGAATTGAGCCTCCAAAGGCTGAGAAGATTGCTTCAAGAATGATATATGAGGACAGAATGAGGGGATCTATTGATCAGGTGGAAGCTGTCATACATTTTGAAGATGATACTGAAGAGCTGCAACAATGGGATCAGCAGATTGTTGGCTTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

295

Amino Acids

34.03

Weight (kDa)

5.75

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	63 - 124	3.8e-07	PSMD12/CSN4, N-terminal
PCI	PF01399	203 - 279	1.8e-18	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	163
AciI	CCGC	1 cut(s)	456
AclI	AACGTT	1 cut(s)	472
AclWI	GGATC	4 cut(s)	91, 103, 805, 870
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	4 cut(s)	118, 191, 277, 561
AcuI	CTGAAG	2 cut(s)	615, 864
AfaI	GTAC	1 cut(s)	497
AgsI	TTSAA	9 cut(s)	142, 190, 277, 319, 542, 604, 665, 768, 833
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	239, 818, 850
AluI	AGCT	3 cut(s)	239, 818, 850
AlwI	GGATC	4 cut(s)	91, 103, 805, 870
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	4 cut(s)	255, 338, 458, 850
ApoI	RAATTY	4 cut(s)	118, 191, 277, 561
AseI	ATTAAT	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	4 cut(s)	327, 359, 807, 839
BbvI	GCAGC	4 cut(s)	267, 350, 445, 837
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	248
BclI	TGATCA	1 cut(s)	805
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	2 cut(s)	432, 459
BisI	GCNGC	5 cut(s)	256, 339, 456, 459, 851
BlsI	GCNGC	5 cut(s)	257, 340, 457, 460, 852
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	5 cut(s)	196, 397, 500, 574, 619
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
Bpu14I	TTCGAA	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	101, 411
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	101, 411
BseGI	GGATG	2 cut(s)	205, 412
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	3 cut(s)	377, 691, 744
BseXI	GCAGC	4 cut(s)	267, 350, 445, 837
BseYI	CCCAGC	1 cut(s)	730
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	6 cut(s)	96, 108, 649, 797, 805, 862
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	3 cut(s)	376, 690, 745
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	724
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	4 cut(s)	91, 103, 805, 870
BspQI	GCTCTTC	1 cut(s)	840
BspT104I	TTCGAA	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	663
BsrGI	TGTACA	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	101, 411
BssMI	GATC	6 cut(s)	96, 108, 649, 797, 805, 862
BssT1I	CCWWGG	2 cut(s)	101, 411
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	436, 643
Bst6I	CTCTTC	5 cut(s)	314, 368, 387, 591, 840
BstAUI	TGTACA	1 cut(s)	495
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	420, 685
BstDEI	CTNAG	3 cut(s)	363, 677, 753
BstF5I	GGATG	2 cut(s)	205, 412
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	6 cut(s)	99, 111, 652, 800, 808, 865
BstMBI	GATC	6 cut(s)	96, 108, 649, 797, 805, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 428
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	432, 459
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	4 cut(s)	267, 350, 445, 837
BstX2I	RGATCY	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	797
BsuRI	GGCC	1 cut(s)	455
BtgZI	GCGATG	1 cut(s)	523
BtsCI	GGATG	2 cut(s)	205, 412
BtsIMutI	CAGTG	1 cut(s)	685
Cac8I	GCNNGC	2 cut(s)	420, 685
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	2 cut(s)	266, 441
CviJI	RGCY	8 cut(s)	239, 422, 455, 742, 752, 818, 850, 879
CviKI_1	RGCY	8 cut(s)	239, 422, 455, 742, 752, 818, 850, 879
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	3 cut(s)	363, 677, 753
DpnI	GATC	6 cut(s)	98, 110, 651, 799, 807, 864
DpnII	GATC	6 cut(s)	96, 108, 649, 797, 805, 862
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	5 cut(s)	314, 368, 387, 591, 840
EarI	CTCTTC	5 cut(s)	314, 368, 387, 591, 840
Eco130I	CCWWGG	2 cut(s)	101, 411
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	615, 864
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	101, 411
EcoT22I	ATGCAT	1 cut(s)	589
ErhI	CCWWGG	2 cut(s)	101, 411
FaeI	CATG	2 cut(s)	269, 444
FatI	CATG	2 cut(s)	265, 440
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	5 cut(s)	256, 339, 456, 459, 851
FokI	GGATG	2 cut(s)	212, 419
Fsp4HI	GCNGC	5 cut(s)	256, 339, 456, 459, 851
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	5 cut(s)	256, 339, 456, 459, 851
GsaI	CCCAGC	1 cut(s)	734
HaeIII	GGCC	1 cut(s)	455
Hin1II	CATG	2 cut(s)	269, 444
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	2 cut(s)	27, 171
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	3 cut(s)	170, 366, 615
Hpy188III	TCNNGA	2 cut(s)	17, 768
Hpy8I	GTNNAC	1 cut(s)	45
HpyCH4III	ACNGT	2 cut(s)	436, 643
HpyCH4IV	ACGT	2 cut(s)	346, 472
HpyCH4V	TGCA	9 cut(s)	135, 218, 283, 302, 444, 461, 587, 656, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 428
HpyF3I	CTNAG	3 cut(s)	363, 677, 753
HpySE526I	ACGT	2 cut(s)	346, 472
Hsp92II	CATG	2 cut(s)	269, 444
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	6 cut(s)	96, 108, 649, 797, 805, 862
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	1 cut(s)	415
LpnPI	CCDG	8 cut(s)	233, 260, 447, 588, 642, 697, 716, 794
Lsp1109I	GCAGC	4 cut(s)	267, 350, 445, 837
LweI	GCATC	5 cut(s)	196, 397, 500, 574, 619
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	2 cut(s)	346, 472
MaeIII	GTNAC	2 cut(s)	17, 436
MalI	GATC	6 cut(s)	98, 110, 651, 799, 807, 864
MboI	GATC	6 cut(s)	96, 108, 649, 797, 805, 862
MboII	GAAGA	8 cut(s)	331, 385, 404, 608, 665, 769, 845, 857
MflI	RGATCY	1 cut(s)	797
MluCI	AATT	9 cut(s)	118, 136, 191, 277, 447, 561, 579, 634, 735
MnlI	CCTC	6 cut(s)	315, 369, 397, 753, 775, 786
Mph1103I	ATGCAT	1 cut(s)	589
MseI	TTAA	3 cut(s)	153, 231, 566
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	215, 428
NdeII	GATC	6 cut(s)	96, 108, 649, 797, 805, 862
NlaIII	CATG	2 cut(s)	269, 444
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	1 cut(s)	444
NspV	TTCGAA	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	840
PfeI	GAWTC	2 cut(s)	27, 171
PkrI	GCNGC	5 cut(s)	257, 340, 457, 460, 852
PshBI	ATTAAT	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	724
PspPI	GGNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	797
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	153, 231, 566
SatI	GCNGC	5 cut(s)	256, 339, 456, 459, 851
Sau3AI	GATC	6 cut(s)	96, 108, 649, 797, 805, 862
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	248
SfaNI	GCATC	5 cut(s)	196, 397, 500, 574, 619
SfcI	CTRYAG	2 cut(s)	432, 459
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	1 cut(s)	464
Sse9I	AATT	9 cut(s)	118, 136, 191, 277, 447, 561, 579, 634, 735
SsiI	CCGC	1 cut(s)	456
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	2 cut(s)	101, 411
TaaI	ACNGT	2 cut(s)	436, 643
TaiI	ACGT	2 cut(s)	349, 475
TaqI	TCGA	1 cut(s)	174
TasI	AATT	9 cut(s)	118, 136, 191, 277, 447, 561, 579, 634, 735
TatI	WGTACW	1 cut(s)	495
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	27, 171
Tru1I	TTAA	3 cut(s)	153, 231, 566
Tru9I	TTAA	3 cut(s)	153, 231, 566
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	4 cut(s)	255, 338, 458, 850
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	17, 231, 282, 405
TspGWI	ACGGA	2 cut(s)	39, 101
TspRI	CASTG	1 cut(s)	685
VpaK11BI	GGWCC	1 cut(s)	464
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	4 cut(s)	118, 191, 277, 561
XceI	RCATGY	1 cut(s)	444
XspI	CTAG	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.