Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Reverse (-)

43904043 .. 43906635

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G020280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCTCCAAGCGCATCTTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACTTCCTGCAGCGCCGGACTAAGGTCTTCCAACCGAATATCAATAGAAATGGAGTCCACTACAGATGATGATGCTGTCAATGCAGAAGCATTTATTAATAAAGCTTCATTCCTGGTTAGCAGCAGTCAGCATGAAGTATTGAATTTGCAGTATAAGGTTTGTTATGCAAGGATTTTAGATTTGAAGAGGAAGTTCTTGGAAGCAGCATTACGTTATTATGACATTTCTCAGATTGAGAAGAGGCAAATAGGAGATGAAGAGATTGATGAGGATGCCTTGGAGCAAGCCTTATCTGCTGCAGTTACATGCACAATTTTGGCCGCTGCAGGACCACAACGTTCCCGTGTTCTTGCTACTTTGTACAAAGATGAGCGATGCTCAAAACTGAAAGTTTATCCAATACTTCAAAAGGTGTATTTGGAGAGAATTTTAAGGAAACCAGAAATTGATGCATTTGCTGAAGAGTTGAAGCCGCATCAGAAAGCACTTCTGCCAGACAATTTTACGGTGTTAGATCGTGCAATGATTGAACATAATCTTCTCAGTGCCAGCAAACTTTACACCAATATAAGTTTTGATGAGTTGGGAACCTTGCTGGGAATTGAGCCTCCAAAGGCTGAGAAGATTGCTTCAAGAATGATATATGAGGACATAATGAGGGGATCTATTGATCAGGTGGAAGCTGTCATACATTTTGAAGATGATACTGAAGAGCTGCAACAATGGGATCAGCAGATTGTTGGCTTATGTCAGGCGCTCAATGACGTCTTGGATAGCATGGCAAAGAAAGGCTTGGCAATTCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

287

Amino Acids

32.39

Weight (kDa)

5.02

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	39 - 97	4.1e-07	PSMD12/CSN4, N-terminal
PCI	PF01399	178 - 252	4.5e-18	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	822
AciI	CCGC	2 cut(s)	375, 527
AclI	AACGTT	1 cut(s)	391
AclWI	GGATC	4 cut(s)	41, 54, 724, 789
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	196, 480
AcuI	CTGAAG	2 cut(s)	534, 783
AcyI	GRCGYC	1 cut(s)	819
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	8 cut(s)	22, 196, 238, 461, 523, 584, 687, 752
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	4 cut(s)	28, 158, 737, 769
AluI	AGCT	4 cut(s)	28, 158, 737, 769
AlwI	GGATC	4 cut(s)	41, 54, 724, 789
AoxI	GGCC	2 cut(s)	3, 372
ApeKI	GCWGC	6 cut(s)	63, 174, 257, 350, 377, 769
ApoI	RAATTY	2 cut(s)	196, 480
AseI	ATTAAT	1 cut(s)	150
AspLEI	GCGC	3 cut(s)	15, 68, 811
AspS9I	GGNCC	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	383
BamHI	GGATCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	4 cut(s)	246, 278, 726, 758
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	6 cut(s)	75, 186, 269, 337, 364, 756
BciT130I	CCWGG	1 cut(s)	167
BclI	TGATCA	1 cut(s)	724
BfmI	CTRYAG	4 cut(s)	61, 114, 351, 378
BfoI	RGCGCY	2 cut(s)	69, 812
BfrI	CTTAAG	1 cut(s)	29
BisI	GCNGC	8 cut(s)	64, 175, 258, 351, 375, 378, 527, 770
BlsI	GCNGC	8 cut(s)	65, 176, 259, 352, 376, 379, 528, 771
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	48, 643
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	6 cut(s)	24, 115, 316, 419, 493, 538
BoxI	GACNNNNGTC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BsaHI	GRCGYC	1 cut(s)	819
BsaJI	CCNNGG	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	3 cut(s)	296, 610, 663
BseXI	GCAGC	6 cut(s)	75, 186, 269, 337, 364, 756
BseYI	CCCAGC	1 cut(s)	649
BshFI	GGCC	2 cut(s)	5, 374
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	2 cut(s)	5, 374
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	5 cut(s)	46, 568, 716, 724, 781
BspACI	CCGC	2 cut(s)	375, 527
BspANI	GGCC	2 cut(s)	5, 374
BspCNI	CTCAG	3 cut(s)	295, 609, 664
BspLI	GGNNCC	2 cut(s)	48, 643
BspMAI	CTGCAG	3 cut(s)	65, 355, 382
BspPI	GGATC	4 cut(s)	41, 54, 724, 789
BspQI	GCTCTTC	1 cut(s)	759
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	5 cut(s)	46, 568, 716, 724, 781
BssNI	GRCGYC	1 cut(s)	819
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	5 cut(s)	233, 287, 306, 510, 759
BstACI	GRCGYC	1 cut(s)	819
BstAFI	CTTAAG	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	339, 604
BstDEI	CTNAG	4 cut(s)	74, 282, 596, 672
BstF5I	GGATG	1 cut(s)	331
BstH2I	RGCGCY	2 cut(s)	69, 812
BstHHI	GCGC	3 cut(s)	15, 68, 811
BstKTI	GATC	5 cut(s)	49, 571, 719, 727, 784
BstMBI	GATC	5 cut(s)	46, 568, 716, 724, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 347
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	363
BstPAI	GACNNNNGTC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	4 cut(s)	61, 114, 351, 378
BstV1I	GCAGC	6 cut(s)	75, 186, 269, 337, 364, 756
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	46, 716
BstYI	RGATCY	2 cut(s)	46, 716
BsuRI	GGCC	2 cut(s)	5, 374
BtgZI	GCGATG	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	2 cut(s)	339, 604
CfoI	GCGC	3 cut(s)	15, 68, 811
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	3 cut(s)	185, 360, 832
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	4 cut(s)	74, 282, 596, 672
DpnI	GATC	5 cut(s)	48, 570, 718, 726, 783
DpnII	GATC	5 cut(s)	46, 568, 716, 724, 781
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	5 cut(s)	233, 287, 306, 510, 759
EarI	CTCTTC	5 cut(s)	233, 287, 306, 510, 759
Eco130I	CCWWGG	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	534, 783
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	188, 363, 835
FalI	AAGNNNNNCTT	3 cut(s)	34, 830, 862
FatI	CATG	3 cut(s)	184, 359, 831
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	8 cut(s)	64, 175, 258, 351, 375, 378, 527, 770
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	8 cut(s)	64, 175, 258, 351, 375, 378, 527, 770
GlaI	GCGC	3 cut(s)	14, 67, 810
GluI	GCNGC	8 cut(s)	64, 175, 258, 351, 375, 378, 527, 770
GsaI	CCCAGC	1 cut(s)	653
HaeII	RGCGCY	2 cut(s)	69, 812
HaeIII	GGCC	2 cut(s)	5, 374
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	3 cut(s)	15, 68, 811
Hin1I	GRCGYC	1 cut(s)	819
Hin1II	CATG	3 cut(s)	188, 363, 835
Hin6I	GCGC	3 cut(s)	13, 66, 809
HinP1I	GCGC	3 cut(s)	13, 66, 809
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	3 cut(s)	285, 534, 863
Hpy188III	TCNNGA	2 cut(s)	19, 687
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	16, 37
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	3 cut(s)	265, 391, 819
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 347
HpyF3I	CTNAG	4 cut(s)	74, 282, 596, 672
HpySE526I	ACGT	3 cut(s)	265, 391, 819
Hsp92I	GRCGYC	1 cut(s)	819
Hsp92II	CATG	3 cut(s)	188, 363, 835
HspAI	GCGC	3 cut(s)	13, 66, 809
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	5 cut(s)	46, 568, 716, 724, 781
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	2 cut(s)	25, 334
Lsp1109I	GCAGC	6 cut(s)	75, 186, 269, 337, 364, 756
LweI	GCATC	6 cut(s)	24, 115, 316, 419, 493, 538
MaeII	ACGT	3 cut(s)	265, 391, 819
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	5 cut(s)	48, 570, 718, 726, 783
MboI	GATC	5 cut(s)	46, 568, 716, 724, 781
MboII	GAAGA	9 cut(s)	72, 250, 304, 323, 527, 584, 688, 764, 776
MflI	RGATCY	2 cut(s)	46, 716
MluCI	AATT	7 cut(s)	196, 366, 480, 498, 553, 654, 852
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	8 cut(s)	16, 60, 234, 288, 316, 672, 694, 705
Mph1103I	ATGCAT	1 cut(s)	508
MseI	TTAA	3 cut(s)	30, 150, 485
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	29
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	134, 347
NdeII	GATC	5 cut(s)	46, 568, 716, 724, 781
NlaIII	CATG	3 cut(s)	188, 363, 835
NlaIV	GGNNCC	2 cut(s)	48, 643
NsiI	ATGCAT	1 cut(s)	508
NspI	RCATGY	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	759
PkrI	GCNGC	8 cut(s)	65, 176, 259, 352, 376, 379, 528, 771
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PshAI	GACNNNNGTC	1 cut(s)	76
PshBI	ATTAAT	1 cut(s)	150
Psp1406I	AACGTT	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	48, 643
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	3 cut(s)	65, 355, 382
PsuI	RGATCY	2 cut(s)	46, 716
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	30, 150, 485
SatI	GCNGC	8 cut(s)	64, 175, 258, 351, 375, 378, 527, 770
Sau3AI	GATC	5 cut(s)	46, 568, 716, 724, 781
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	167
SfaNI	GCATC	6 cut(s)	24, 115, 316, 419, 493, 538
SfcI	CTRYAG	4 cut(s)	61, 114, 351, 378
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	7 cut(s)	196, 366, 480, 498, 553, 654, 852
SsiI	CCGC	2 cut(s)	375, 527
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	3 cut(s)	268, 394, 822
TasI	AATT	7 cut(s)	196, 366, 480, 498, 553, 654, 852
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	2 cut(s)	377, 529
Tru1I	TTAA	3 cut(s)	30, 150, 485
Tru9I	TTAA	3 cut(s)	30, 150, 485
TscAI	CASTG	1 cut(s)	604
TseI	GCWGC	6 cut(s)	63, 174, 257, 350, 377, 769
TspDTI	ATGAA	3 cut(s)	150, 201, 324
TspRI	CASTG	1 cut(s)	604
Vha464I	CTTAAG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	150
XapI	RAATTY	2 cut(s)	196, 480
XceI	RCATGY	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	820
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.