Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Forward (+)

1944077 .. 1945723

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGAGTGCCTTCGCGAGCGCCTCTGCGATCTCTGACCAGCGGCAGAAGATTGAGCAGTACAAGCACATTCTCTCCACCGTGATTTCCTCAAGCGACGTTGTTCAGGCCAAGAAGTTCATCGATCACTTGTTGTCGGATGATGTTCCATTGGTGGTTTCCCGGCAGCTTTTGCACACTTTTGCCCAGGAGTTGGGGCGGTGGGAGCCGGAGACCCAGAAGGATATTGCCCATTATGCCCTTTCTCAGATTCGCGTCGTTTCATTTGAAGAACAGGTGACGATAATAAGAGAGAAACTTGCGGAATTGTATGAATCTGAGCAACAATGGTCAAAAGCAGCTCAGATGCTCAGTGGAATTAACCTCGACTCAGGAACGAGAGCTGTTGATGACACATTCAAGTTATCAAAATGTGTCCAAATTGCTCGCCTATATCTCGAGGATGATGATGCTGTCAATGCAGAAGCTTTTATTCATAAAGCTTCATTCTTGATTACAACTATTCAGCATGAAGTATTGACTTTAGAGTATAAGTTGTTATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

182

Amino Acids

20.56

Weight (kDa)

5.1

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccII	CGCG	2 cut(s)	17, 255
AciI	CCGC	3 cut(s)	43, 199, 302
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	269, 400
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	5 cut(s)	169, 341, 383, 467, 482
AluI	AGCT	5 cut(s)	169, 341, 383, 467, 482
Alw26I	GTCTC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	166, 338
AspLEI	GCGC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	437
BbvI	GCAGC	2 cut(s)	178, 350
BciT130I	CCWGG	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	544
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	3 cut(s)	44, 167, 339
BlsI	GCNGC	3 cut(s)	45, 168, 340
Bme1390I	CCNGG	2 cut(s)	163, 188
BmeT110I	CYCGRG	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	163, 188
BmsI	GCATC	2 cut(s)	336, 439
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	145, 448
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	5 cut(s)	260, 309, 356, 364, 384
BseXI	GCAGC	2 cut(s)	178, 350
Bsh1236I	CGCG	2 cut(s)	17, 255
BshFI	GGCC	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	163, 209
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	110
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	30, 124
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	3 cut(s)	43, 199, 302
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	5 cut(s)	259, 310, 355, 363, 383
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	17, 255
BspLI	GGNNCC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	30, 124
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	82
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	19, 427
BstDEI	CTNAG	5 cut(s)	246, 318, 342, 350, 370
BstF5I	GGATG	2 cut(s)	145, 448
BstFNI	CGCG	2 cut(s)	17, 255
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	2 cut(s)	33, 127
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	30, 124
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 172, 205, 236, 458
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	161, 186
BstUI	CGCG	2 cut(s)	17, 255
BstV1I	GCAGC	2 cut(s)	178, 350
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	110
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	145, 448
BtsIMutI	CAGTG	1 cut(s)	358
BtuMI	TCGCGA	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	19, 427
CfoI	GCGC	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	123
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	509
CviJI	RGCY	7 cut(s)	110, 169, 208, 341, 383, 467, 482
CviKI_1	RGCY	7 cut(s)	110, 169, 208, 341, 383, 467, 482
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	5 cut(s)	246, 318, 342, 350, 370
DpnI	GATC	2 cut(s)	32, 126
DpnII	GATC	2 cut(s)	30, 124
Eco31I	GGTCTC	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	512
FaiI	YATR	7 cut(s)	237, 312, 433, 477, 510, 531, 541
FatI	CATG	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	44, 167, 339
FokI	GGATG	2 cut(s)	152, 455
Fsp4HI	GCNGC	3 cut(s)	44, 167, 339
FspBI	CTAG	1 cut(s)	544
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	44, 167, 339
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	2 cut(s)	163, 209
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	512
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HindIII	AAGCTT	2 cut(s)	465, 480
HinfI	GANTC	3 cut(s)	250, 314, 368
HpaII	CCGG	2 cut(s)	163, 209
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	5 cut(s)	37, 139, 249, 319, 345
Hpy188III	TCNNGA	4 cut(s)	16, 372, 437, 490
Hpy99I	CGWCG	2 cut(s)	101, 260
HpyAV	CCTTC	2 cut(s)	22, 214
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	175, 461
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 172, 205, 236, 458
HpyF3I	CTNAG	5 cut(s)	246, 318, 342, 350, 370
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	512
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	30, 124
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	9 cut(s)	53, 92, 173, 176, 200, 222, 230, 260, 357
Lsp1109I	GCAGC	2 cut(s)	178, 350
LweI	GCATC	2 cut(s)	336, 439
MaeI	CTAG	1 cut(s)	544
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	32, 126
MboI	GATC	2 cut(s)	30, 124
MboII	GAAGA	2 cut(s)	61, 281
MluCI	AATT	3 cut(s)	305, 357, 420
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	34, 100, 374, 433
MseI	TTAA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	2 cut(s)	163, 209
MspR9I	CCNGG	2 cut(s)	163, 188
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	2 cut(s)	17, 255
MwoI	GCNNNNNNNGC	5 cut(s)	64, 172, 205, 236, 458
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	30, 124
NlaIII	CATG	1 cut(s)	512
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	277
NruI	TCGCGA	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	250, 314
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	45, 168, 340
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	207
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	3 cut(s)	44, 167, 339
Sau3AI	GATC	2 cut(s)	30, 124
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	163, 188
SetI	ASST	8 cut(s)	102, 171, 279, 343, 366, 385, 469, 484
SfaNI	GCATC	2 cut(s)	336, 439
Sfr274I	CTCGAG	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	91, 437
SmoI	CTYRAG	2 cut(s)	91, 437
Sse9I	AATT	3 cut(s)	305, 357, 420
SsiI	CCGC	3 cut(s)	43, 199, 302
SspMI	CTAG	1 cut(s)	544
StyD4I	CCNGG	2 cut(s)	161, 186
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	123, 366, 438
TasI	AATT	3 cut(s)	305, 357, 420
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	250, 314
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	166, 338
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	6 cut(s)	109, 252, 327, 464, 474, 525
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	437
XspI	CTAG	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.