Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003626.1

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Reverse (-)

3456 .. 6831

Gene Structure 3376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003626.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atggaaggtgccttcgccaaagcctctgcgatcactgatcagaggcagaagatcgagcagtacaagcacattctctccaccgtgttctcatccgacgacgtcgttccggccaagaagttcatcgatcacatgttgtcggacgacgtccctctggtggtttcccggcagctgttgcagagttttgcgcaggacttggggcggttggagccggaatcgcagaaggagattgcccattatacccttgctcagattcagcctcgcagtgtttcatttgaagaacaggttttgataataagggagaaacttgcagaactgtatgagtctgagcagcagtggtcaaaagcagctcagatgctcagtggaattaatctagactcctcaatgagagtgattgatgacaagttcaagttagcaaagtgtgttcaagttgctcgcctgtatcttgaggatgatgatgctgtcaatgcagaagcatttattaataaagcttcattctccttaatatccattgcgactaatgcagattttatgatattgaacatacttgtttgttatgcaaggattttagatttgaagaggaagttcttggaagcagcattacgttattatgacatttctcagattgagaagaggcaaataggagatgaagagattgatgaggatgccttggagcaagccttatctgctgcagttacatgcacaattttggccgctgcaggaccacaacgttcccgtgttcttgccactttgtacaaagatgagcgatgctcaaaactgaaagtttatccaatacttcaaaaggtttatttggagagaattttgaggaaaccagaaattgatgcatttgctgaagagttgaagtcgcatcagaaagcacttctgccagacaattttacggtgttagatcgtgcaatgattgaacataatcttctcagtgccagcaaactttacaccaatataagttttgatgagttgggaaccttgctgggaattgagcctccaaaggctgagaagattgcttcaagaatgatatatgaggacagaatgaggggatctattgatcaggtggaagctgtcatacattttgaagatgatactgaagagctgcaacaatgggatcagcagattgttggcttatgtcaagcgctcaatgacgtcttggatagcatggcaaagaaaggcttggcaattcctgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

399

Amino Acids

45.22

Weight (kDa)

4.95

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	102, 147, 1158
Acc16I	TGCGCA	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	8
AciI	CCGC	2 cut(s)	199, 711
AclI	AACGTT	1 cut(s)	727
AclWI	GGATC	2 cut(s)	1060, 1125
AcoI	YGGCCR	2 cut(s)	108, 708
AcsI	RAATTY	1 cut(s)	816
AcuI	CTGAAG	2 cut(s)	870, 1119
AcyI	GRCGYC	3 cut(s)	99, 144, 1155
AfaI	GTAC	2 cut(s)	62, 752
AfeI	AGCGCT	1 cut(s)	1146
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	129
AluBI	AGCT	5 cut(s)	169, 347, 488, 1073, 1105
AluI	AGCT	5 cut(s)	169, 347, 488, 1073, 1105
AlwI	GGATC	2 cut(s)	1060, 1125
Aor51HI	AGCGCT	1 cut(s)	1146
AoxI	GGCC	2 cut(s)	108, 708
ApeKI	GCWGC	7 cut(s)	166, 328, 344, 593, 686, 713, 1105
ApoI	RAATTY	1 cut(s)	816
AseI	ATTAAT	2 cut(s)	366, 480
AspLEI	GCGC	2 cut(s)	187, 1147
AspS9I	GGNCC	1 cut(s)	719
AsuC2I	CCSGG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	4 cut(s)	582, 614, 1062, 1094
BbvI	GCAGC	7 cut(s)	178, 340, 356, 605, 673, 700, 1092
BclI	TGATCA	2 cut(s)	37, 1060
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	2 cut(s)	687, 714
BfoI	RGCGCY	1 cut(s)	1148
BisI	GCNGC	8 cut(s)	167, 329, 345, 594, 687, 711, 714, 1106
BlsI	GCNGC	8 cut(s)	168, 330, 346, 595, 688, 712, 715, 1107
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	3 cut(s)	10, 207, 979
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	6 cut(s)	342, 445, 652, 755, 829, 874
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	123
BsaHI	GRCGYC	3 cut(s)	99, 144, 1155
BsaJI	CCNNGG	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse3DI	GCAATG	2 cut(s)	507, 918
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	3 cut(s)	89, 454, 667
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	2 cut(s)	507, 918
BseMII	CTCAG	7 cut(s)	260, 315, 362, 370, 632, 946, 999
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	7 cut(s)	178, 340, 356, 605, 673, 700, 1092
BseYI	CCCAGC	1 cut(s)	985
BshFI	GGCC	2 cut(s)	110, 710
BshNI	GGYRCC	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	107, 163, 209
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	110, 710
Bsp1407I	TGTACA	1 cut(s)	750
Bsp143I	GATC	8 cut(s)	30, 37, 51, 124, 904, 1052, 1060, 1117
BspACI	CCGC	2 cut(s)	199, 711
BspANI	GGCC	2 cut(s)	110, 710
BspCNI	CTCAG	7 cut(s)	259, 316, 361, 369, 631, 945, 1000
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	10, 207, 979
BspMAI	CTGCAG	2 cut(s)	691, 718
BspPI	GGATC	2 cut(s)	1060, 1125
BspQI	GCTCTTC	1 cut(s)	1095
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	2 cut(s)	507, 918
BsrGI	TGTACA	1 cut(s)	750
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	8 cut(s)	30, 37, 51, 124, 904, 1052, 1060, 1117
BssNI	GRCGYC	3 cut(s)	99, 144, 1155
BssT1I	CCWWGG	1 cut(s)	666
Bst4CI	ACNGT	3 cut(s)	82, 315, 898
Bst6I	CTCTTC	5 cut(s)	569, 623, 642, 846, 1095
BstACI	GRCGYC	3 cut(s)	99, 144, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	750
BstC8I	GCNNGC	3 cut(s)	433, 675, 940
BstDEI	CTNAG	7 cut(s)	246, 324, 348, 356, 618, 932, 1008
BstF5I	GGATG	3 cut(s)	89, 454, 667
BstH2I	RGCGCY	1 cut(s)	1148
BstHHI	GCGC	2 cut(s)	187, 1147
BstKTI	GATC	8 cut(s)	33, 40, 54, 127, 907, 1055, 1063, 1120
BstMBI	GATC	8 cut(s)	30, 37, 51, 124, 904, 1052, 1060, 1117
BstMWI	GCNNNNNNNGC	7 cut(s)	64, 172, 205, 214, 464, 518, 683
BstNSI	RCATGY	2 cut(s)	133, 699
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	687, 714
BstV1I	GCAGC	7 cut(s)	178, 340, 356, 605, 673, 700, 1092
BstX2I	RGATCY	1 cut(s)	1052
BstYI	RGATCY	1 cut(s)	1052
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	110, 710
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	778
BtsCI	GGATG	3 cut(s)	89, 454, 667
BtsI	GCAGTG	2 cut(s)	268, 338
BtsIMutI	CAGTG	5 cut(s)	33, 268, 338, 364, 940
Cac8I	GCNNGC	3 cut(s)	433, 675, 940
CfoI	GCGC	2 cut(s)	187, 1147
Cfr13I	GGNCC	1 cut(s)	719
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	61, 751
CviAII	CATG	3 cut(s)	130, 696, 1168
CviQI	GTAC	2 cut(s)	61, 751
DdeI	CTNAG	7 cut(s)	246, 324, 348, 356, 618, 932, 1008
DpnI	GATC	8 cut(s)	32, 39, 53, 126, 906, 1054, 1062, 1119
DpnII	GATC	8 cut(s)	30, 37, 51, 124, 904, 1052, 1060, 1117
EaeI	YGGCCR	2 cut(s)	108, 708
Eam1104I	CTCTTC	5 cut(s)	569, 623, 642, 846, 1095
EarI	CTCTTC	5 cut(s)	569, 623, 642, 846, 1095
Eco130I	CCWWGG	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	719
Eco47III	AGCGCT	1 cut(s)	1146
Eco57I	CTGAAG	2 cut(s)	870, 1119
EcoT14I	CCWWGG	1 cut(s)	666
EcoT22I	ATGCAT	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	3 cut(s)	133, 699, 1171
FalI	AAGNNNNNCTT	2 cut(s)	1166, 1198
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	129, 695, 1167
FbaI	TGATCA	2 cut(s)	37, 1060
Fnu4HI	GCNGC	8 cut(s)	167, 329, 345, 594, 687, 711, 714, 1106
FokI	GGATG	3 cut(s)	76, 461, 674
Fsp4HI	GCNGC	8 cut(s)	167, 329, 345, 594, 687, 711, 714, 1106
FspBI	CTAG	1 cut(s)	371
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	2 cut(s)	186, 1146
GluI	GCNGC	8 cut(s)	167, 329, 345, 594, 687, 711, 714, 1106
GsaI	CCCAGC	1 cut(s)	989
HaeII	RGCGCY	1 cut(s)	1148
HaeIII	GGCC	2 cut(s)	110, 710
HapII	CCGG	3 cut(s)	107, 163, 209
HhaI	GCGC	2 cut(s)	187, 1147
Hin1I	GRCGYC	3 cut(s)	99, 144, 1155
Hin1II	CATG	3 cut(s)	133, 699, 1171
Hin6I	GCGC	2 cut(s)	185, 1145
HinP1I	GCGC	2 cut(s)	185, 1145
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	4 cut(s)	212, 250, 320, 374
HpaII	CCGG	3 cut(s)	107, 163, 209
Hpy188I	TCNGA	9 cut(s)	42, 94, 139, 249, 325, 351, 621, 870, 1199
Hpy188III	TCNNGA	3 cut(s)	371, 443, 1023
Hpy99I	CGWCG	4 cut(s)	98, 101, 104, 146
HpyAV	CCTTC	2 cut(s)	22, 214
HpyCH4III	ACNGT	3 cut(s)	82, 315, 898
HpyCH4IV	ACGT	5 cut(s)	99, 144, 601, 727, 1155
HpyF10VI	GCNNNNNNNGC	7 cut(s)	64, 172, 205, 214, 464, 518, 683
HpyF3I	CTNAG	7 cut(s)	246, 324, 348, 356, 618, 932, 1008
HpySE526I	ACGT	5 cut(s)	99, 144, 601, 727, 1155
Hsp92I	GRCGYC	3 cut(s)	99, 144, 1155
Hsp92II	CATG	3 cut(s)	133, 699, 1171
HspAI	GCGC	2 cut(s)	185, 1145
Ksp22I	TGATCA	2 cut(s)	37, 1060
Kzo9I	GATC	8 cut(s)	30, 37, 51, 124, 904, 1052, 1060, 1117
LguI	GCTCTTC	1 cut(s)	1095
LmnI	GCTCC	2 cut(s)	205, 670
Lsp1109I	GCAGC	7 cut(s)	178, 340, 356, 605, 673, 700, 1092
LweI	GCATC	6 cut(s)	342, 445, 652, 755, 829, 874
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	5 cut(s)	99, 144, 601, 727, 1155
MaeIII	GTNAC	1 cut(s)	691
MalI	GATC	8 cut(s)	32, 39, 53, 126, 906, 1054, 1062, 1119
MboI	GATC	8 cut(s)	30, 37, 51, 124, 904, 1052, 1060, 1117
MflI	RGATCY	1 cut(s)	1052
MluCI	AATT	7 cut(s)	363, 702, 816, 834, 889, 990, 1188
MlyI	GAGTC	2 cut(s)	329, 368
MmeI	TCCRAC	3 cut(s)	117, 117, 183
Mph1103I	ATGCAT	1 cut(s)	844
MseI	TTAA	3 cut(s)	366, 480, 500
MspA1I	CMGCKG	2 cut(s)	169, 713
MspI	CCGG	3 cut(s)	107, 163, 209
MspR9I	CCNGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	7 cut(s)	64, 172, 205, 214, 464, 518, 683
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	8 cut(s)	30, 37, 51, 124, 904, 1052, 1060, 1117
NlaIII	CATG	3 cut(s)	133, 699, 1171
NlaIV	GGNNCC	3 cut(s)	10, 207, 979
NsbI	TGCGCA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	844
NspI	RCATGY	2 cut(s)	133, 699
PciI	ACATGT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	1095
PfeI	GAWTC	2 cut(s)	212, 250
PflFI	GACNNNGTC	2 cut(s)	98, 143
PkrI	GCNGC	8 cut(s)	168, 330, 346, 595, 688, 712, 715, 1107
PleI	GAGTC	2 cut(s)	328, 368
PpsI	GAGTC	2 cut(s)	328, 368
PscI	ACATGT	1 cut(s)	129
PshBI	ATTAAT	2 cut(s)	366, 480
Psp1406I	AACGTT	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	985
PspN4I	GGNNCC	3 cut(s)	10, 207, 979
PspPI	GGNCC	1 cut(s)	719
PstI	CTGCAG	2 cut(s)	691, 718
PsuI	RGATCY	1 cut(s)	1052
PsyI	GACNNNGTC	2 cut(s)	98, 143
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	62, 752
RsaNI	GTAC	2 cut(s)	61, 751
SapI	GCTCTTC	1 cut(s)	1095
SaqAI	TTAA	3 cut(s)	366, 480, 500
SatI	GCNGC	8 cut(s)	167, 329, 345, 594, 687, 711, 714, 1106
Sau3AI	GATC	8 cut(s)	30, 37, 51, 124, 904, 1052, 1060, 1117
Sau96I	GGNCC	1 cut(s)	719
SchI	GAGTC	2 cut(s)	329, 368
ScrFI	CCNGG	1 cut(s)	163
SfaNI	GCATC	6 cut(s)	342, 445, 652, 755, 829, 874
SfcI	CTRYAG	2 cut(s)	687, 714
SinI	GGWCC	1 cut(s)	719
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	7 cut(s)	363, 702, 816, 834, 889, 990, 1188
SsiI	CCGC	2 cut(s)	199, 711
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	3 cut(s)	82, 315, 898
TaiI	ACGT	5 cut(s)	102, 147, 604, 730, 1158
TaqI	TCGA	2 cut(s)	54, 123
TasI	AATT	7 cut(s)	363, 702, 816, 834, 889, 990, 1188
TatI	WGTACW	2 cut(s)	60, 750
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	2 cut(s)	212, 250
Tru1I	TTAA	3 cut(s)	366, 480, 500
Tru9I	TTAA	3 cut(s)	366, 480, 500
TscAI	CASTG	5 cut(s)	40, 268, 338, 364, 940
TseI	GCWGC	7 cut(s)	166, 328, 344, 593, 686, 713, 1105
TspDTI	ATGAA	4 cut(s)	109, 258, 480, 660
TspRI	CASTG	5 cut(s)	40, 268, 338, 364, 940
Tth111I	GACNNNGTC	2 cut(s)	98, 143
VpaK11BI	GGWCC	1 cut(s)	719
VspI	ATTAAT	2 cut(s)	366, 480
XapI	RAATTY	1 cut(s)	816
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	2 cut(s)	133, 699
XspI	CTAG	1 cut(s)	371
ZraI	GACGTC	3 cut(s)	100, 145, 1156
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.