Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Forward (+)

59759613 .. 59763713

Gene Structure 4101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG411800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAAGGTGCCTTCGCCAAAGCCTCTGCGATCACTGATCAGAGGCAGAAAATCGAGCAGTACAAGCACATTCTCTCCACCGTGTTCTCATCCGACGACGTCGTTCCGGCCAAGAAGTTCATCGATCACATGTTGTCGGACGACGTCCCTCTGGTGGTTTCCCGGCAGCTGTTGCAGAGTTTTGCGCAGGACTTGGGGCGGTTGGAGCCGGAATCGCAGAAGGAGATTGCCCATTATACCCTTGCTCAGATTCAGCCTCGCAGCGTTTCATTTGAAGAACAGGTTTTGATAATAAGGGAGAAACTTGCAGAACTGTATGAGTCTGAGCAGCAGTGGTCAAAAGCAGCTCAGATGCTCAGTGGAATTAATCTAGACTCCTCAATGAGAGTGATTGATGACAAGTTCAAGTTAGCAAAGTGTGTTCAAGTTGCCCGCCTGTATCTTGAGGATGATGATGCTGTCAATGCAGAAGCATTTATTAATAAAGCTTCATTCTTGGTTAGCAGCAGTCAGCATGAAGTATTGAATTTGCAGTATAAGGTTTGTTATGCAAGGATTTTAGATTTGAAGAGGAAGTTCTTGGAAGCAGCATTACGTTATTATGACATTTCTCAGATTGAGAAGAGGCAAATAGGAGATGAAGAGATTGATGAGGATGCCTTGGAGCAAGCCTTATCTGCTGCAGTTACATGCACAATTTTGGCCGCTGCAGGACCACAACGTTCCCGTGTTCTTGCCACTTTGTACAAAGATGAGCGATGCTCAAAACTGAAAGTTTATCCAATACTTCAAAAGGTGTATTTGGAGAGAATTTTGAGGAAACCAGAAATTGATGCATTTGCTGAAGAGTTGAAGCCGCATCAGAAAGCACTTCTGCCAGACAATTTTACGGTGTTAGATCGTGCAATGATTGAACATAATCTTCTCAGTGCCAGCAAACTTTACACCAATATAAGTTTTGATGAGTTGGGAACCTTGCTGGGAATTGAGCCTCCAAAGGCTGAGAAGATTGCTTCAAGAATGATATACGAGGACAGAATGAGGGGATCTATTGATCAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

354

Amino Acids

40.33

Weight (kDa)

5.39

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	13 - 207	4.5e-33	PSMD12/CSN4, N-terminal
PCI	PF01399	288 - 354	5.6e-16	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	102, 147
Acc16I	TGCGCA	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	8
AciI	CCGC	4 cut(s)	199, 433, 705, 857
AclI	AACGTT	1 cut(s)	721
AclWI	GGATC	1 cut(s)	1054
AcoI	YGGCCR	2 cut(s)	108, 702
AcsI	RAATTY	2 cut(s)	526, 810
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	2 cut(s)	99, 144
AfaI	GTAC	2 cut(s)	62, 746
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	9 cut(s)	275, 406, 425, 526, 568, 791, 853, 914, 1017
AluBI	AGCT	3 cut(s)	169, 347, 488
AluI	AGCT	3 cut(s)	169, 347, 488
AlwI	GGATC	1 cut(s)	1054
AoxI	GGCC	2 cut(s)	108, 702
ApeKI	GCWGC	8 cut(s)	166, 261, 328, 344, 504, 587, 680, 707
ApoI	RAATTY	2 cut(s)	526, 810
AseI	ATTAAT	2 cut(s)	366, 480
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	713
AsuC2I	CCSGG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	576, 608
BbvI	GCAGC	8 cut(s)	178, 273, 340, 356, 516, 599, 667, 694
BclI	TGATCA	2 cut(s)	37, 1054
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	2 cut(s)	681, 708
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	3 cut(s)	10, 207, 973
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	6 cut(s)	342, 445, 646, 749, 823, 868
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	123
BsaHI	GRCGYC	2 cut(s)	99, 144
BsaJI	CCNNGG	1 cut(s)	660
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	912
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	3 cut(s)	89, 454, 661
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	7 cut(s)	260, 315, 362, 370, 626, 940, 993
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	8 cut(s)	178, 273, 340, 356, 516, 599, 667, 694
BseYI	CCCAGC	1 cut(s)	979
BshFI	GGCC	2 cut(s)	110, 704
BshNI	GGYRCC	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	107, 163, 209
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	110, 704
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	6 cut(s)	30, 37, 124, 898, 1046, 1054
BspACI	CCGC	4 cut(s)	199, 433, 705, 857
BspANI	GGCC	2 cut(s)	110, 704
BspCNI	CTCAG	7 cut(s)	259, 316, 361, 369, 625, 939, 994
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	10, 207, 973
BspMAI	CTGCAG	2 cut(s)	685, 712
BspPI	GGATC	1 cut(s)	1054
BspT107I	GGYRCC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	744
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	6 cut(s)	30, 37, 124, 898, 1046, 1054
BssNI	GRCGYC	2 cut(s)	99, 144
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	3 cut(s)	82, 315, 892
Bst6I	CTCTTC	4 cut(s)	563, 617, 636, 840
BstACI	GRCGYC	2 cut(s)	99, 144
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	3 cut(s)	433, 669, 934
BstDEI	CTNAG	7 cut(s)	246, 324, 348, 356, 612, 926, 1002
BstF5I	GGATG	3 cut(s)	89, 454, 661
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	6 cut(s)	33, 40, 127, 901, 1049, 1057
BstMBI	GATC	6 cut(s)	30, 37, 124, 898, 1046, 1054
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 172, 205, 214, 464, 677
BstNSI	RCATGY	2 cut(s)	133, 693
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	681, 708
BstV1I	GCAGC	8 cut(s)	178, 273, 340, 356, 516, 599, 667, 694
BstX2I	RGATCY	1 cut(s)	1046
BstYI	RGATCY	1 cut(s)	1046
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	110, 704
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	772
BtsCI	GGATG	3 cut(s)	89, 454, 661
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	4 cut(s)	33, 338, 364, 934
Cac8I	GCNNGC	3 cut(s)	433, 669, 934
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	713
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	61, 745
CviAII	CATG	3 cut(s)	130, 515, 690
CviQI	GTAC	2 cut(s)	61, 745
DdeI	CTNAG	7 cut(s)	246, 324, 348, 356, 612, 926, 1002
DpnI	GATC	6 cut(s)	32, 39, 126, 900, 1048, 1056
DpnII	GATC	6 cut(s)	30, 37, 124, 898, 1046, 1054
EaeI	YGGCCR	2 cut(s)	108, 702
Eam1104I	CTCTTC	4 cut(s)	563, 617, 636, 840
EarI	CTCTTC	4 cut(s)	563, 617, 636, 840
Eco130I	CCWWGG	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	713
Eco57I	CTGAAG	1 cut(s)	864
EcoT14I	CCWWGG	1 cut(s)	660
EcoT22I	ATGCAT	1 cut(s)	838
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	3 cut(s)	133, 518, 693
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	3 cut(s)	129, 514, 689
FauI	CCCGC	1 cut(s)	440
FbaI	TGATCA	2 cut(s)	37, 1054
FokI	GGATG	3 cut(s)	76, 461, 668
FspBI	CTAG	1 cut(s)	371
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	983
HaeIII	GGCC	2 cut(s)	110, 704
HapII	CCGG	3 cut(s)	107, 163, 209
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	2 cut(s)	99, 144
Hin1II	CATG	3 cut(s)	133, 518, 693
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	4 cut(s)	212, 250, 320, 374
HpaII	CCGG	3 cut(s)	107, 163, 209
Hpy188I	TCNGA	8 cut(s)	42, 94, 139, 249, 325, 351, 615, 864
Hpy188III	TCNNGA	3 cut(s)	371, 443, 1017
Hpy99I	CGWCG	4 cut(s)	98, 101, 104, 146
HpyAV	CCTTC	2 cut(s)	22, 214
HpyCH4III	ACNGT	3 cut(s)	82, 315, 892
HpyCH4IV	ACGT	4 cut(s)	99, 144, 595, 721
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 172, 205, 214, 464, 677
HpyF3I	CTNAG	7 cut(s)	246, 324, 348, 356, 612, 926, 1002
HpySE526I	ACGT	4 cut(s)	99, 144, 595, 721
Hsp92I	GRCGYC	2 cut(s)	99, 144
Hsp92II	CATG	3 cut(s)	133, 518, 693
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	2 cut(s)	37, 1054
Kzo9I	GATC	6 cut(s)	30, 37, 124, 898, 1046, 1054
LmnI	GCTCC	2 cut(s)	205, 664
Lsp1109I	GCAGC	8 cut(s)	178, 273, 340, 356, 516, 599, 667, 694
LweI	GCATC	6 cut(s)	342, 445, 646, 749, 823, 868
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	4 cut(s)	99, 144, 595, 721
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	6 cut(s)	32, 39, 126, 900, 1048, 1056
MboI	GATC	6 cut(s)	30, 37, 124, 898, 1046, 1054
MboII	GAAGA	7 cut(s)	287, 580, 634, 653, 857, 914, 1018
MflI	RGATCY	1 cut(s)	1046
MluCI	AATT	7 cut(s)	363, 526, 696, 810, 828, 883, 984
MlyI	GAGTC	2 cut(s)	329, 368
MmeI	TCCRAC	3 cut(s)	117, 117, 183
Mph1103I	ATGCAT	1 cut(s)	838
MseI	TTAA	2 cut(s)	366, 480
MspA1I	CMGCKG	2 cut(s)	169, 707
MspI	CCGG	3 cut(s)	107, 163, 209
MspR9I	CCNGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	6 cut(s)	64, 172, 205, 214, 464, 677
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	6 cut(s)	30, 37, 124, 898, 1046, 1054
NlaIII	CATG	3 cut(s)	133, 518, 693
NlaIV	GGNNCC	3 cut(s)	10, 207, 973
NsbI	TGCGCA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	838
NspI	RCATGY	2 cut(s)	133, 693
PciI	ACATGT	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	212, 250
PflFI	GACNNNGTC	2 cut(s)	98, 143
PleI	GAGTC	2 cut(s)	328, 368
PpsI	GAGTC	2 cut(s)	328, 368
PscI	ACATGT	1 cut(s)	129
PshBI	ATTAAT	2 cut(s)	366, 480
Psp1406I	AACGTT	1 cut(s)	721
PspFI	CCCAGC	1 cut(s)	979
PspN4I	GGNNCC	3 cut(s)	10, 207, 973
PspPI	GGNCC	1 cut(s)	713
PstI	CTGCAG	2 cut(s)	685, 712
PsuI	RGATCY	1 cut(s)	1046
PsyI	GACNNNGTC	2 cut(s)	98, 143
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	62, 746
RsaNI	GTAC	2 cut(s)	61, 745
SaqAI	TTAA	2 cut(s)	366, 480
Sau3AI	GATC	6 cut(s)	30, 37, 124, 898, 1046, 1054
Sau96I	GGNCC	1 cut(s)	713
SchI	GAGTC	2 cut(s)	329, 368
ScrFI	CCNGG	1 cut(s)	163
SfaNI	GCATC	6 cut(s)	342, 445, 646, 749, 823, 868
SfcI	CTRYAG	2 cut(s)	681, 708
SinI	GGWCC	1 cut(s)	713
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	7 cut(s)	363, 526, 696, 810, 828, 883, 984
SsiI	CCGC	4 cut(s)	199, 433, 705, 857
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	3 cut(s)	82, 315, 892
TaiI	ACGT	4 cut(s)	102, 147, 598, 724
TaqI	TCGA	2 cut(s)	54, 123
TasI	AATT	7 cut(s)	363, 526, 696, 810, 828, 883, 984
TatI	WGTACW	2 cut(s)	60, 744
TauI	GCSGC	2 cut(s)	707, 859
TfiI	GAWTC	2 cut(s)	212, 250
Tru1I	TTAA	2 cut(s)	366, 480
Tru9I	TTAA	2 cut(s)	366, 480
TscAI	CASTG	4 cut(s)	40, 338, 364, 934
TseI	GCWGC	8 cut(s)	166, 261, 328, 344, 504, 587, 680, 707
TspDTI	ATGAA	5 cut(s)	109, 258, 480, 531, 654
TspRI	CASTG	4 cut(s)	40, 338, 364, 934
Tth111I	GACNNNGTC	2 cut(s)	98, 143
VpaK11BI	GGWCC	1 cut(s)	713
VspI	ATTAAT	2 cut(s)	366, 480
XapI	RAATTY	2 cut(s)	526, 810
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	2 cut(s)	133, 693
XspI	CTAG	1 cut(s)	371
ZraI	GACGTC	2 cut(s)	100, 145
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.