Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Forward (+)

42106776 .. 42109714

Gene Structure 2939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG219900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCTGTCCCCGCCGCCCCTAGATCCTCGATTGAGTAGCTCTATCGCCGCCAGTCCTGCAACCACGCGAAAGACGAGTCGGGCATCGCACACGCGATTGGGAAGGATTTTAGATTTGAAGAGGAAGTTCTTGGAAGCAGCATTACGTTATTATGACATTTCTCAGATTGAGAAGAGGCAAATAGGAGATGAAGAGATTGATGAGGATGCCTTGGAGCAAGCCTTATCTGCTGCAGTTACATGCACAATTTTGGCCGCTGCAGGACCACAACGTTCCCGTGTTCTTGCCACTTTGTACAAAGATGAGCGATGTTCAAAACTGAAAGTTTATCCAATACTTCAAAAGGTGTATTTGGAGAGAATTTTAAGGAAACCAGAAATTGATGCATTTGCTGAAGAGTTGAAGCCGCATCAGAAAGCACTTCTGCCAGACAATTTTACGGTGTTAGATAGTGCAATGATTGAACATAATCTTCTCAGTGCCAGCAAACTTTACACCAATATAAGTTTTGATGAGTTGGGAACCTTGCTGGGAATTGAGCCTCCAAAGGTACACTCTTGTATACCCTTTTTGTTGAATCTTGTGCTTCATTTGTTAAGTAGCACTACTCCGTATTCAGGTCTCTGTTACCATTATTACTATGCTTCATGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

218

Amino Acids

24.44

Weight (kDa)

7.65

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	138 - 186	8.4e-07	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	2 cut(s)	67, 94
AciI	CCGC	5 cut(s)	11, 14, 48, 255, 407
AclI	AACGTT	1 cut(s)	271
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	2 cut(s)	296, 552
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	6 cut(s)	118, 315, 341, 403, 464, 577
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	626
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	3 cut(s)	137, 230, 257
ApoI	RAATTY	1 cut(s)	360
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	126, 158
BbvI	GCAGC	3 cut(s)	149, 217, 244
BcoDI	GTCTC	1 cut(s)	626
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	2 cut(s)	231, 258
BisI	GCNGC	7 cut(s)	14, 48, 138, 231, 255, 258, 407
BlsI	GCNGC	7 cut(s)	15, 49, 139, 232, 256, 259, 408
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	523
BmsI	GCATC	4 cut(s)	92, 196, 373, 418
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	176, 490
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	3 cut(s)	149, 217, 244
BseYI	CCCAGC	1 cut(s)	529
Bsh1236I	CGCG	2 cut(s)	67, 94
BshFI	GGCC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	626
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	626
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	5 cut(s)	11, 14, 48, 255, 407
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	2 cut(s)	175, 489
BspFNI	CGCG	2 cut(s)	67, 94
BspLI	GGNNCC	1 cut(s)	523
BspMAI	CTGCAG	2 cut(s)	235, 262
BspPI	GGATC	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	462
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	22
BssNAI	GTATAC	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	210
Bst1107I	GTATAC	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	4 cut(s)	113, 167, 186, 390
BstAUI	TGTACA	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	219, 484
BstDEI	CTNAG	2 cut(s)	162, 476
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	2 cut(s)	67, 94
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	626
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 56, 227
BstNSI	RCATGY	1 cut(s)	243
BstSFI	CTRYAG	2 cut(s)	231, 258
BstUI	CGCG	2 cut(s)	67, 94
BstV1I	GCAGC	3 cut(s)	149, 217, 244
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BstZ17I	GTATAC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	254
BtgZI	GCGATG	2 cut(s)	69, 322
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	219, 484
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	295, 551
CviAII	CATG	2 cut(s)	240, 648
CviJI	RGCY	5 cut(s)	39, 221, 254, 406, 541
CviKI_1	RGCY	5 cut(s)	39, 221, 254, 406, 541
CviQI	GTAC	2 cut(s)	295, 551
DdeI	CTNAG	2 cut(s)	162, 476
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	4 cut(s)	113, 167, 186, 390
EarI	CTCTTC	4 cut(s)	113, 167, 186, 390
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	626
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	243, 651
FaiI	YATR	7 cut(s)	153, 241, 468, 503, 563, 642, 649
FatI	CATG	2 cut(s)	239, 647
FauI	CCCGC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	7 cut(s)	14, 48, 138, 231, 255, 258, 407
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	7 cut(s)	14, 48, 138, 231, 255, 258, 407
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	7 cut(s)	14, 48, 138, 231, 255, 258, 407
GsaI	CCCAGC	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	243, 651
HinfI	GANTC	2 cut(s)	76, 577
Hpy166II	GTNNAC	2 cut(s)	553, 563
Hpy188I	TCNGA	2 cut(s)	165, 414
Hpy8I	GTNNAC	2 cut(s)	553, 563
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	2 cut(s)	145, 271
HpyCH4V	TGCA	6 cut(s)	59, 233, 243, 260, 386, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 56, 227
HpyF3I	CTNAG	2 cut(s)	162, 476
HpySE526I	ACGT	2 cut(s)	145, 271
Hsp92II	CATG	2 cut(s)	243, 651
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	8 cut(s)	64, 69, 246, 387, 441, 496, 515, 603
Lsp1109I	GCAGC	3 cut(s)	149, 217, 244
LweI	GCATC	4 cut(s)	92, 196, 373, 418
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	2 cut(s)	145, 271
MaeIII	GTNAC	2 cut(s)	235, 626
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	5 cut(s)	130, 184, 203, 407, 464
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	5 cut(s)	246, 360, 378, 433, 534
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	5 cut(s)	36, 114, 168, 196, 552
Mph1103I	ATGCAT	1 cut(s)	388
MseI	TTAA	2 cut(s)	365, 596
MspA1I	CMGCKG	1 cut(s)	257
MvnI	CGCG	2 cut(s)	67, 94
MwoI	GCNNNNNNNGC	3 cut(s)	10, 56, 227
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	243, 651
NlaIV	GGNNCC	1 cut(s)	523
NsiI	ATGCAT	1 cut(s)	388
NspI	RCATGY	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	577
PkrI	GCNGC	7 cut(s)	15, 49, 139, 232, 256, 259, 408
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	2 cut(s)	235, 262
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	2 cut(s)	296, 552
RsaNI	GTAC	2 cut(s)	295, 551
SaqAI	TTAA	2 cut(s)	365, 596
SatI	GCNGC	7 cut(s)	14, 48, 138, 231, 255, 258, 407
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	85
SetI	ASST	7 cut(s)	41, 148, 274, 348, 527, 552, 622
SfaNI	GCATC	4 cut(s)	92, 196, 373, 418
SfcI	CTRYAG	2 cut(s)	231, 258
SinI	GGWCC	1 cut(s)	263
Sse9I	AATT	5 cut(s)	246, 360, 378, 433, 534
SsiI	CCGC	5 cut(s)	11, 14, 48, 255, 407
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	2 cut(s)	148, 274
TaqI	TCGA	1 cut(s)	28
TasI	AATT	5 cut(s)	246, 360, 378, 433, 534
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	4 cut(s)	16, 50, 257, 409
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	2 cut(s)	365, 596
Tru9I	TTAA	2 cut(s)	365, 596
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	3 cut(s)	137, 230, 257
TspDTI	ATGAA	3 cut(s)	204, 578, 636
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	562
XspI	CTAG	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.