Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Forward (+)

82272972 .. 82288550

Gene Structure 15579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG602500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAGTGATGAAGGGTCAAGGATGAAACTTATCACCAATGCGGGTTTTGCCTCTGGTTATTATAAGGTTTGTTATGCAAGGATTTTAGATTTAAAGAGGAAGTTCTTGGAAGCAGCATTATGTTATTATGACATTTCTCAGATTGAGAAGAGGCAAATAGGAGATGAAGAGATTGCTGAGGATGCCTTGGAGCAAGCCTTATCTGCTGCAGTTACATGCACAATTTTGGCCGCTGCAGGACCACAACGTTCCCGTGTTCTTGCCACTTTGTACAAAGATGAGCGATGCTCAAAACTGAAAGTTTATCCAATACTTCAAAAGGTGTATTTGGAGAGAATTTTAAGGAAACCAGAAATTGATGCATTTGCTGAAGAGTTGAAGCCGCATCAGAAAGCACTTCTGCCAGACAATTTTATGGTGTTAGATCGTGCAATGATTGAACATAATCTTCTCAGTGCCAGCAAACTTTACACCAATATAAGTTTTGATGAGTTGGGAACCTTGCTGGGAATTGAGCCTCCAAAGGCTGAGAAGATTGCTTCAAGAATTATATATGAGGACAGAATGAGGGGATCTATTGATCAGGTGGAAGCTGTCATACATTTTGAAGATGATACTGAAGAGCTGCAACAATGGGATCAGCAGAATGCAAATGCCAAACTATCTCGTATGAATGACTTTGGAATCCCTGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

232

Amino Acids

26.4

Weight (kDa)

5.18

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	130 - 204	4e-17	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AciI	CCGC	3 cut(s)	41, 231, 383
AclI	AACGTT	1 cut(s)	247
AclWI	GGATC	2 cut(s)	580, 645
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	336
AcuI	CTGAAG	2 cut(s)	390, 639
AfaI	GTAC	1 cut(s)	272
AgsI	TTSAA	5 cut(s)	317, 379, 440, 543, 608
AjnI	CCWGG	1 cut(s)	688
AluBI	AGCT	2 cut(s)	593, 625
AluI	AGCT	2 cut(s)	593, 625
AlwI	GGATC	2 cut(s)	580, 645
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	4 cut(s)	113, 206, 233, 625
ApoI	RAATTY	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	239
BarI	GAAGNNNNNNTAC	2 cut(s)	582, 614
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	125, 193, 220, 612
BciT130I	CCWGG	1 cut(s)	690
BclI	TGATCA	1 cut(s)	580
BfmI	CTRYAG	2 cut(s)	207, 234
BisI	GCNGC	6 cut(s)	114, 207, 231, 234, 383, 626
BlsI	GCNGC	6 cut(s)	115, 208, 232, 235, 384, 627
Bme1390I	CCNGG	1 cut(s)	690
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	690
BmsI	GCATC	4 cut(s)	172, 275, 349, 394
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu10I	CCTNAGC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	186, 688
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	2 cut(s)	186, 688
BseGI	GGATG	2 cut(s)	27, 187
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	4 cut(s)	152, 168, 466, 519
BseXI	GCAGC	4 cut(s)	125, 193, 220, 612
BseYI	CCCAGC	1 cut(s)	505
BshFI	GGCC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	4 cut(s)	424, 572, 580, 637
BspACI	CCGC	3 cut(s)	41, 231, 383
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	4 cut(s)	151, 169, 465, 520
BspLI	GGNNCC	1 cut(s)	499
BspMAI	CTGCAG	2 cut(s)	211, 238
BspPI	GGATC	2 cut(s)	580, 645
BspQI	GCTCTTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	438
BsrGI	TGTACA	1 cut(s)	270
BssECI	CCNNGG	2 cut(s)	186, 688
BssMI	GATC	4 cut(s)	424, 572, 580, 637
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	690
Bst6I	CTCTTC	4 cut(s)	143, 162, 366, 615
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	195, 460
BstDEI	CTNAG	4 cut(s)	138, 177, 452, 528
BstF5I	GGATG	2 cut(s)	27, 187
BstKTI	GATC	4 cut(s)	427, 575, 583, 640
BstMBI	GATC	4 cut(s)	424, 572, 580, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 182, 203
BstNI	CCWGG	1 cut(s)	690
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	688
BstSFI	CTRYAG	2 cut(s)	207, 234
BstV1I	GCAGC	4 cut(s)	125, 193, 220, 612
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BsuRI	GGCC	1 cut(s)	230
BtgZI	GCGATG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	27, 187
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	195, 460
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	7 cut(s)	197, 230, 382, 517, 527, 593, 625
CviKI_1	RGCY	7 cut(s)	197, 230, 382, 517, 527, 593, 625
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	4 cut(s)	138, 177, 452, 528
DpnI	GATC	4 cut(s)	426, 574, 582, 639
DpnII	GATC	4 cut(s)	424, 572, 580, 637
DraI	TTTAAA	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	4 cut(s)	143, 162, 366, 615
EarI	CTCTTC	4 cut(s)	143, 162, 366, 615
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	2 cut(s)	390, 639
EcoRII	CCWGG	1 cut(s)	688
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	219
FatI	CATG	1 cut(s)	215
FauI	CCCGC	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	6 cut(s)	114, 207, 231, 234, 383, 626
FokI	GGATG	2 cut(s)	34, 194
Fsp4HI	GCNGC	6 cut(s)	114, 207, 231, 234, 383, 626
GluI	GCNGC	6 cut(s)	114, 207, 231, 234, 383, 626
GsaI	CCCAGC	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	219
HinfI	GANTC	2 cut(s)	684, 693
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	141, 390
Hpy188III	TCNNGA	1 cut(s)	543
HpyAV	CCTTC	1 cut(s)	5
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	8 cut(s)	77, 209, 219, 236, 362, 431, 628, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 182, 203
HpyF3I	CTNAG	4 cut(s)	138, 177, 452, 528
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	4 cut(s)	424, 572, 580, 637
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	8 cut(s)	39, 222, 363, 417, 472, 491, 569, 675
Lsp1109I	GCAGC	4 cut(s)	125, 193, 220, 612
LweI	GCATC	4 cut(s)	172, 275, 349, 394
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	4 cut(s)	426, 574, 582, 639
MboI	GATC	4 cut(s)	424, 572, 580, 637
MboII	GAAGA	7 cut(s)	160, 179, 383, 440, 544, 620, 632
MflI	RGATCY	1 cut(s)	572
MluCI	AATT	6 cut(s)	222, 336, 354, 409, 510, 546
MnlI	CCTC	7 cut(s)	61, 90, 144, 172, 528, 550, 561
Mph1103I	ATGCAT	1 cut(s)	364
MseI	TTAA	2 cut(s)	92, 341
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	690
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	3 cut(s)	47, 182, 203
NdeII	GATC	4 cut(s)	424, 572, 580, 637
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	1 cut(s)	499
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	615
PctI	GAATGC	1 cut(s)	652
PfeI	GAWTC	2 cut(s)	684, 693
PkrI	GCNGC	6 cut(s)	115, 208, 232, 235, 384, 627
PsiI	TTATAA	1 cut(s)	63
Psp1406I	AACGTT	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	688
PspFI	CCCAGC	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	239
PstI	CTGCAG	2 cut(s)	211, 238
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	92, 341
SatI	GCNGC	6 cut(s)	114, 207, 231, 234, 383, 626
Sau3AI	GATC	4 cut(s)	424, 572, 580, 637
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	690
SetI	ASST	7 cut(s)	69, 250, 324, 503, 588, 595, 627
SfaNI	GCATC	4 cut(s)	172, 275, 349, 394
SfcI	CTRYAG	2 cut(s)	207, 234
SinI	GGWCC	1 cut(s)	239
Sse9I	AATT	6 cut(s)	222, 336, 354, 409, 510, 546
SsiI	CCGC	3 cut(s)	41, 231, 383
StyD4I	CCNGG	1 cut(s)	688
StyI	CCWWGG	1 cut(s)	186
TaiI	ACGT	1 cut(s)	250
TasI	AATT	6 cut(s)	222, 336, 354, 409, 510, 546
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	2 cut(s)	233, 385
TfiI	GAWTC	2 cut(s)	684, 693
Tru1I	TTAA	2 cut(s)	92, 341
Tru9I	TTAA	2 cut(s)	92, 341
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	4 cut(s)	113, 206, 233, 625
TspDTI	ATGAA	4 cut(s)	24, 38, 180, 686
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.