Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007266

Physical Location & Seq

Genomic Coordinates Reverse (-)

28601121 .. 28605031

Gene Structure 3911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40000.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAAGCCGCCTTCGCACAAGCCTCTGCAATCGCTGATCAGAGGCAGAAGATCGAGCAGTACAAGCACATTCTCTCCACCGTGTTCTCCTCCAAAGACGACGTCGTTCCGGCCAAGAAGTTCATCGATCACATGTTGTCCGACGACGTGCCTCTGGTGGTTTCGCGGCAGCTGTTGCAGAGTTTTGCGCAGGACCTGGGGCGGTTGAGGCCGGAATTGCAGAAGGAGATTGCCCATTATGCCCTTGCTCAGATTCAGCCTCGCAGCGTTTCATTTGAAGAACAGGTTTTGATAATAAGGGAGAAACTCGCAGAATTGTATGAGTCTGAGCAGCAGTGGTCAAAAGCAGCTCAGATGCTCAGTGGAATTAATCTGGATTCTTCGATGAGAGTGATTGATGACAAGTTCAAGTTAGCAAAGTGTGTTCAAGTTGCTCGCCTGTATCTTGAGGATGATGATGCTGTCAATGCAGAAGCGTTTATTAACAAAGCTTCATTCTTGGTTAGCAGCAGTCAGCATGAAGTATTGAATTTGCAGTATAAGGTTTGTTATGCGAGGATTTTAGATTTAAAGAGGAAGTTCTTGGAAGCAGCATTACGTTATTATGACATTTCTCAGATTGAGAAGAGGCAGATAGGAGAGGAAGAGATTGATGAGGAAGCCTTGCAGCAAGCCCTATCTGCTGCAGTTACATGTACAATTTTGGCCGCTGCAGGACCCCAACGGTCTCGTGTTCTTGCCACTCTATACAAAGATGAGCGATGCTCAAAGCTGAAAGTTTATCCAATACTTCAAAAGGTGTATTTGGAGAGAATTTTGAGGAAACCAGAAATCGATGCGTTTGCTGAAGAGTTAAAGCCACATCAGAAAGCACTTCTGCCAGACAATTTTACGGTGTTGGATCGTGCAATGATTGAACATAATCTTCTCAGTGCCAGCAAACTTTACACAAATATAAGTTTCGAGGAGTTGGGAACCTTGCTGGGAATTGAGCCTCCAAAGGCTGAGAAGATTGCTTCAAGAATGATATATGAGGACAGAATGAGGGGATCTATTGATCAGGTGGAAGCTGTCATACATTTTGAGGATGATACTGAAGAGCTGCAGCAATGGGATCAGCAGATTGTTGGCTTGTGTCAAGCGCTGAATGACATCTTGGATAGCATGGCAAAGAAAGGCTTGGCAATTCCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0008180 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

399

Amino Acids

45.32

Weight (kDa)

5.2

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSMD12-CSN4_N	PF22241	2 - 90	3.6e-13	PSMD12/CSN4, N-terminal
PCI	PF01399	171 - 245	1.7e-18	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42970
fragaria_vesca	FvH4_2g40000 FvH4_2g40000
malus_domestica	MD08G1033300.v1.1 MD15G1029900.v1.1
prunus_persica	Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1 Prupe.1G381600_v2.0.a1
pyrus_communis	pycom08g02640 pycom15g02630
rosa_chinensis	RchiOBHm_Chr2g0166611 RchiOBHm_Chr6g0300751
rosa_laevigata	RLG00000011305
rosa_multiflora	Rmu_sc0000829.1_g000026 Rmu_sc0003626.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167450
rosa_rugosa	Rorug06G0298900
rosa_samantha	Rh2BG602500 Rh4DG219900 Rh6AG411700 Rh6BG418900 Rh6CG426400 Rh6DG411800
rosa_wichuraiana	Rw1G020280 Rw7G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
Acc16I	TGCGCA	1 cut(s)	189
AccII	CGCG	1 cut(s)	166
AciI	CCGC	4 cut(s)	9, 166, 202, 708
AclWI	GGATC	3 cut(s)	909, 1057, 1122
AcoI	YGGCCR	2 cut(s)	111, 705
AcsI	RAATTY	2 cut(s)	529, 813
AcuI	CTGAAG	2 cut(s)	867, 1116
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	62, 697
AfeI	AGCGCT	1 cut(s)	1143
AflIII	ACRYGT	2 cut(s)	132, 692
AgsI	TTSAA	7 cut(s)	278, 409, 428, 529, 794, 917, 1020
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	195
AjuI	GAANNNNNNNTTGG	2 cut(s)	1139, 1171
AluBI	AGCT	6 cut(s)	172, 350, 491, 772, 1070, 1102
AluI	AGCT	6 cut(s)	172, 350, 491, 772, 1070, 1102
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	3 cut(s)	909, 1057, 1122
AlwNI	CAGNNNCTG	1 cut(s)	196
Aor51HI	AGCGCT	1 cut(s)	1143
AoxI	GGCC	3 cut(s)	111, 209, 705
ApoI	RAATTY	2 cut(s)	529, 813
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AseI	ATTAAT	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	190, 1144
AspS9I	GGNCC	2 cut(s)	193, 716
AvaII	GGWCC	2 cut(s)	193, 716
BarI	GAAGNNNNNNTAC	4 cut(s)	579, 611, 1059, 1091
BauI	CACGAG	1 cut(s)	729
BcgI	CGANNNNNNTGC	2 cut(s)	824, 858
BciT130I	CCWGG	1 cut(s)	197
BclI	TGATCA	2 cut(s)	37, 1057
BcoDI	GTCTC	1 cut(s)	732
BfmI	CTRYAG	3 cut(s)	684, 711, 1103
BfoI	RGCGCY	1 cut(s)	1145
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	2 cut(s)	193, 716
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	193, 716
BmiI	GGNNCC	2 cut(s)	718, 976
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	4 cut(s)	345, 448, 752, 826
BplI	GAGNNNNNCTC	2 cut(s)	749, 781
BpuEI	CTTGAG	1 cut(s)	467
Bsa29I	ATCGAT	2 cut(s)	126, 834
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	732
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse3DI	GCAATG	2 cut(s)	915, 1115
BseBI	CCWGG	1 cut(s)	197
BseCI	ATCGAT	2 cut(s)	126, 834
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	457, 1093
BseMI	GCAATG	2 cut(s)	915, 1115
BseMII	CTCAG	7 cut(s)	263, 318, 365, 373, 629, 943, 996
BseRI	GAGGAG	2 cut(s)	79, 980
BseYI	CCCAGC	1 cut(s)	982
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	3 cut(s)	113, 211, 707
BshVI	ATCGAT	2 cut(s)	126, 834
BsiSI	CCGG	2 cut(s)	110, 212
BsmAI	GTCTC	1 cut(s)	732
BsnI	GGCC	3 cut(s)	113, 211, 707
Bso31I	GGTCTC	1 cut(s)	732
Bsp1407I	TGTACA	1 cut(s)	695
Bsp143I	GATC	7 cut(s)	37, 51, 127, 901, 1049, 1057, 1114
BspACI	CCGC	4 cut(s)	9, 166, 202, 708
BspANI	GGCC	3 cut(s)	113, 211, 707
BspCNI	CTCAG	7 cut(s)	262, 319, 364, 372, 628, 942, 997
BspDI	ATCGAT	2 cut(s)	126, 834
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	718, 976
BspMAI	CTGCAG	3 cut(s)	688, 715, 1107
BspPI	GGATC	3 cut(s)	909, 1057, 1122
BspQI	GCTCTTC	1 cut(s)	1092
BspTNI	GGTCTC	1 cut(s)	732
BsrDI	GCAATG	2 cut(s)	915, 1115
BsrGI	TGTACA	1 cut(s)	695
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	7 cut(s)	37, 51, 127, 901, 1049, 1057, 1114
BssNI	GRCGYC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	729
Bst2BI	CACGAG	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	3 cut(s)	82, 726, 895
Bst6I	CTCTTC	4 cut(s)	620, 639, 843, 1092
BstACI	GRCGYC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	695
BstC8I	GCNNGC	3 cut(s)	436, 672, 937
BstDEI	CTNAG	7 cut(s)	249, 327, 351, 359, 615, 929, 1005
BstF5I	GGATG	2 cut(s)	457, 1093
BstFNI	CGCG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	1145
BstHHI	GCGC	2 cut(s)	190, 1144
BstKTI	GATC	7 cut(s)	40, 54, 130, 904, 1052, 1060, 1117
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	7 cut(s)	37, 51, 127, 901, 1049, 1057, 1114
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 64, 175, 208, 217, 239, 467, 680
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	136, 696
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	3 cut(s)	684, 711, 1103
BstUI	CGCG	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	1049
BstYI	RGATCY	1 cut(s)	1049
Bsu15I	ATCGAT	2 cut(s)	126, 834
BsuRI	GGCC	3 cut(s)	113, 211, 707
BsuTUI	ATCGAT	2 cut(s)	126, 834
BtgZI	GCGATG	1 cut(s)	775
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	457, 1093
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	3 cut(s)	341, 367, 937
Cac8I	GCNNGC	3 cut(s)	436, 672, 937
CaiI	CAGNNNCTG	1 cut(s)	196
CfoI	GCGC	2 cut(s)	190, 1144
Cfr13I	GGNCC	2 cut(s)	193, 716
ClaI	ATCGAT	2 cut(s)	126, 834
Csp6I	GTAC	2 cut(s)	61, 696
CviAII	CATG	4 cut(s)	133, 518, 693, 1165
CviQI	GTAC	2 cut(s)	61, 696
DdeI	CTNAG	7 cut(s)	249, 327, 351, 359, 615, 929, 1005
DpnI	GATC	7 cut(s)	39, 53, 129, 903, 1051, 1059, 1116
DpnII	GATC	7 cut(s)	37, 51, 127, 901, 1049, 1057, 1114
DraI	TTTAAA	1 cut(s)	570
EaeI	YGGCCR	2 cut(s)	111, 705
Eam1104I	CTCTTC	4 cut(s)	620, 639, 843, 1092
EarI	CTCTTC	4 cut(s)	620, 639, 843, 1092
Eco31I	GGTCTC	1 cut(s)	732
Eco47I	GGWCC	2 cut(s)	193, 716
Eco47III	AGCGCT	1 cut(s)	1143
Eco57I	CTGAAG	2 cut(s)	867, 1116
EcoO109I	RGGNCCY	2 cut(s)	193, 716
EcoRII	CCWGG	1 cut(s)	195
FaeI	CATG	4 cut(s)	136, 521, 696, 1168
FalI	AAGNNNNNCTT	2 cut(s)	1163, 1195
FatI	CATG	4 cut(s)	132, 517, 692, 1164
FbaI	TGATCA	2 cut(s)	37, 1057
FokI	GGATG	2 cut(s)	464, 1100
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	2 cut(s)	189, 1143
GsaI	CCCAGC	1 cut(s)	986
HaeII	RGCGCY	1 cut(s)	1145
HaeIII	GGCC	3 cut(s)	113, 211, 707
HapII	CCGG	2 cut(s)	110, 212
HhaI	GCGC	2 cut(s)	190, 1144
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	136, 521, 696, 1168
Hin6I	GCGC	2 cut(s)	188, 1142
HinP1I	GCGC	2 cut(s)	188, 1142
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	3 cut(s)	253, 323, 377
HpaII	CCGG	2 cut(s)	110, 212
Hpy188I	TCNGA	8 cut(s)	42, 142, 252, 328, 354, 618, 867, 1196
Hpy188III	TCNNGA	3 cut(s)	374, 446, 1020
Hpy99I	CGWCG	4 cut(s)	104, 107, 146, 149
HpyAV	CCTTC	2 cut(s)	22, 217
HpyCH4III	ACNGT	3 cut(s)	82, 726, 895
HpyCH4IV	ACGT	3 cut(s)	102, 147, 598
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 64, 175, 208, 217, 239, 467, 680
HpyF3I	CTNAG	7 cut(s)	249, 327, 351, 359, 615, 929, 1005
HpySE526I	ACGT	3 cut(s)	102, 147, 598
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	136, 521, 696, 1168
HspAI	GCGC	2 cut(s)	188, 1142
Ksp22I	TGATCA	2 cut(s)	37, 1057
Kzo9I	GATC	7 cut(s)	37, 51, 127, 901, 1049, 1057, 1114
LguI	GCTCTTC	1 cut(s)	1092
LweI	GCATC	4 cut(s)	345, 448, 752, 826
MaeII	ACGT	3 cut(s)	102, 147, 598
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	7 cut(s)	39, 53, 129, 903, 1051, 1059, 1116
MboI	GATC	7 cut(s)	37, 51, 127, 901, 1049, 1057, 1114
MboII	GAAGA	9 cut(s)	61, 290, 372, 637, 656, 860, 917, 1021, 1109
MflI	RGATCY	1 cut(s)	1049
MluCI	AATT	9 cut(s)	215, 314, 366, 529, 699, 813, 886, 987, 1185
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	165, 879
MseI	TTAA	4 cut(s)	369, 483, 569, 854
MspA1I	CMGCKG	2 cut(s)	172, 710
MspI	CCGG	2 cut(s)	110, 212
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	8 cut(s)	14, 64, 175, 208, 217, 239, 467, 680
NdeII	GATC	7 cut(s)	37, 51, 127, 901, 1049, 1057, 1114
NlaIII	CATG	4 cut(s)	136, 521, 696, 1168
NlaIV	GGNNCC	2 cut(s)	718, 976
NsbI	TGCGCA	1 cut(s)	189
NspI	RCATGY	2 cut(s)	136, 696
PciI	ACATGT	2 cut(s)	132, 692
PciSI	GCTCTTC	1 cut(s)	1092
PfeI	GAWTC	2 cut(s)	253, 377
PflFI	GACNNNGTC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	2 cut(s)	193, 716
PscI	ACATGT	2 cut(s)	132, 692
PshBI	ATTAAT	1 cut(s)	369
Psp5II	RGGWCCY	2 cut(s)	193, 716
Psp6I	CCWGG	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	982
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	718, 976
PspPI	GGNCC	2 cut(s)	193, 716
PspPPI	RGGWCCY	2 cut(s)	193, 716
PstI	CTGCAG	3 cut(s)	688, 715, 1107
PstNI	CAGNNNCTG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	1049
PsyI	GACNNNGTC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	62, 697
RsaNI	GTAC	2 cut(s)	61, 696
SapI	GCTCTTC	1 cut(s)	1092
SaqAI	TTAA	4 cut(s)	369, 483, 569, 854
Sau3AI	GATC	7 cut(s)	37, 51, 127, 901, 1049, 1057, 1114
Sau96I	GGNCC	2 cut(s)	193, 716
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	197
SfaNI	GCATC	4 cut(s)	345, 448, 752, 826
SfcI	CTRYAG	3 cut(s)	684, 711, 1103
SinI	GGWCC	2 cut(s)	193, 716
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	9 cut(s)	215, 314, 366, 529, 699, 813, 886, 987, 1185
SsiI	CCGC	4 cut(s)	9, 166, 202, 708
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	82, 726, 895
TaiI	ACGT	3 cut(s)	105, 150, 601
TaqI	TCGA	5 cut(s)	54, 126, 383, 834, 963
TasI	AATT	9 cut(s)	215, 314, 366, 529, 699, 813, 886, 987, 1185
TatI	WGTACW	2 cut(s)	60, 695
TauI	GCSGC	3 cut(s)	11, 169, 710
TfiI	GAWTC	2 cut(s)	253, 377
Tru1I	TTAA	4 cut(s)	369, 483, 569, 854
Tru9I	TTAA	4 cut(s)	369, 483, 569, 854
TscAI	CASTG	3 cut(s)	341, 367, 937
TspDTI	ATGAA	4 cut(s)	112, 261, 483, 534
TspRI	CASTG	3 cut(s)	341, 367, 937
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	193, 716
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	2 cut(s)	529, 813
XceI	RCATGY	2 cut(s)	136, 696
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.