AT5G43720

rRNA-processing protein Efg1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008484
Physical Location & Seq
Reverse (-)
17557088 .. 17559412
2325 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43720.1

Sequence Viewer

Length: 990 bp
ATGGCGCACGGAGGCTATGCCAAGAGAAGGGATTCGGAACCAAAACAGACGGCGGGAAGCAGTCGGAGGTCGAAAGTATTGCGTGTAGAGAAGAAACCTAAGACTGTCTCCATCAAGAATCAGATGCGTTCTGTTGAACGCTTTCTTCGTAAAGATTTGCCTCCTGAAGTAAGAGAGTCTCTAGTAGAGAAGTTGGAAGATTTGAAGAAGCAGCAAGACGCTCATGCCCGTCTTGCTGTTGAACGTAAAATATTCTTTAGGAACAGAAAGATTAAGTTCTTTGAGCGGAGAAAGATCGAAAGAAGCATTAGACGTCTTGAGAAGTTACAACGTACTTCATCTGCTCATGTGGGAGATGTAGATATAGCTGAGCAACTCAGTAAACTCAAAGAAGATCTTGAATATGTTCGGTTCTTCCCGAAAAATGAGAAATATGTATCACTTTTTACTGGAGCTGAGGATTCAGAAGTAATTGAGAAGAGAGGTAAAATGCGGCAGCAGATCAAAGCCAATATTATTGTTGCTGCTGCTAGTGGGAAGGAGTTAGAAGAGACGGGGAGTGAAGATGATGGTCTTCTGGACCTTAGTGATGATGATTTCTTTGATAAAGGGAGTTCAAGCGATGAAGCAGACGCAGATGATGAATTGACTGATAAAAGCGCAAAGGAGGCTGCTTCTAGTGCTTCTGGTAGAGCAACTTCTGGCATGTCTAGTGATGAACGGAATCAGAAGCAAAACTCTGATAGAGCTTTAATGCCACCACCACAAGCAAGGTTTGAATCAAATTCTAGGAAGAATTTATATGTACAGAGGAATGAGATGCCATCATCCTCGAGAAACAACACTTCAAACAGAAGAAGTGAGTCTTCATATAATGCAAGGGCTTCTGCGGCGAATTCATATAGCAGTCAGAGTAGCAACTTGAGCTCCAATTCTGATGCTCATAAACCCAAAAGGAAGAGAAGGCCTAAGAAGAAGAAGCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Efg1

Protein Analysis

329

Amino Acids

37.47

Weight (kDa)

9.86

Isoelectric Point (pI)

65.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Efg1 PF10153 38 - 149 2.4e-29 rRNA-processing protein Efg1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 316
AccBSI CCGCTC 1 cut(s) 286
AciI CCGC 4 cut(s) 53, 286, 493, 890
AcsI RAATTY 3 cut(s) 784, 796, 895
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 313
AfaI GTAC 2 cut(s) 334, 807
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 7 cut(s) 137, 205, 242, 401, 618, 779, 849
AluBI AGCT 4 cut(s) 368, 455, 749, 927
AluI AGCT 4 cut(s) 368, 455, 749, 927
Alw21I GWGCWC 1 cut(s) 929
Alw26I GTCTC 3 cut(s) 112, 183, 545
Ama87I CYCGRG 1 cut(s) 832
AoxI GGCC 1 cut(s) 965
ApeKI GCWGC 5 cut(s) 211, 496, 524, 527, 671
ApoI RAATTY 3 cut(s) 784, 796, 895
Asp700I GAANNNNTTC 3 cut(s) 31, 141, 405
AspLEI GCGC 2 cut(s) 7, 662
AspS9I GGNCC 1 cut(s) 580
AvaI CYCGRG 1 cut(s) 832
AvaII GGWCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 929
BarI GAAGNNNNNNTAC 2 cut(s) 682, 714
BbsI GAAGAC 2 cut(s) 566, 858
Bbv12I GWGCWC 1 cut(s) 929
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 5 cut(s) 223, 508, 511, 514, 658
BccI CCATC 3 cut(s) 119, 563, 832
BceAI ACGGC 1 cut(s) 66
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BcoDI GTCTC 3 cut(s) 112, 183, 545
BfaI CTAG 5 cut(s) 182, 531, 678, 711, 789
BglII AGATCT 1 cut(s) 394
BisI GCNGC 7 cut(s) 212, 494, 497, 525, 528, 672, 891
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 7 cut(s) 213, 495, 498, 526, 529, 673, 892
Bme18I GGWCC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 832
BmgT120I GGNCC 1 cut(s) 580
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 3 cut(s) 114, 810, 928
BpiI GAAGAC 2 cut(s) 566, 858
BpmI CTGGAG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 456
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 338, 943
BsaHI GRCGYC 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 911, 941
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 454
BseGI GGATG 1 cut(s) 827
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 3 cut(s) 360, 391, 447
BseNI ACTGG 1 cut(s) 454
BseXI GCAGC 5 cut(s) 223, 508, 511, 514, 658
BshFI GGCC 1 cut(s) 967
BsiHKAI GWGCWC 1 cut(s) 929
BsiHKCI CYCGRG 1 cut(s) 832
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 3 cut(s) 112, 183, 545
BsmBI CGTCTC 1 cut(s) 545
BsnI GGCC 1 cut(s) 967
BsoBI CYCGRG 1 cut(s) 832
Bsp1286I GDGCHC 1 cut(s) 929
Bsp1407I TGTACA 1 cut(s) 805
Bsp143I GATC 3 cut(s) 294, 394, 501
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 4 cut(s) 53, 286, 493, 890
BspANI GGCC 1 cut(s) 967
BspCNI CTCAG 3 cut(s) 361, 390, 448
BspLI GGNNCC 1 cut(s) 39
BsrBI CCGCTC 1 cut(s) 286
BsrGI TGTACA 1 cut(s) 805
BsrI ACTGG 1 cut(s) 454
BssMI GATC 3 cut(s) 294, 394, 501
BssNI GRCGYC 1 cut(s) 313
Bst4CI ACNGT 2 cut(s) 106, 987
Bst6I CTCTTC 3 cut(s) 473, 543, 953
BstACI GRCGYC 1 cut(s) 313
BstAUI TGTACA 1 cut(s) 805
BstDEI CTNAG 6 cut(s) 99, 369, 377, 456, 584, 969
BstF5I GGATG 1 cut(s) 827
BstHHI GCGC 2 cut(s) 7, 662
BstKTI GATC 3 cut(s) 297, 397, 504
BstMAI GTCTC 3 cut(s) 112, 183, 545
BstMBI GATC 3 cut(s) 294, 394, 501
BstMWI GCNNNNNNNGC 5 cut(s) 233, 668, 680, 890, 924
BstNSI RCATGY 1 cut(s) 709
BstV1I GCAGC 5 cut(s) 223, 508, 511, 514, 658
BstV2I GAAGAC 2 cut(s) 566, 858
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 1 cut(s) 967
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 1 cut(s) 827
CfoI GCGC 2 cut(s) 7, 662
Cfr13I GGNCC 1 cut(s) 580
CseI GACGC 2 cut(s) 227, 641
Csp6I GTAC 2 cut(s) 333, 806
CviAII CATG 3 cut(s) 224, 347, 706
CviJI RGCY 9 cut(s) 15, 368, 455, 509, 671, 749, 884, 927, 967
CviKI_1 RGCY 9 cut(s) 15, 368, 455, 509, 671, 749, 884, 927, 967
CviQI GTAC 2 cut(s) 333, 806
DdeI CTNAG 6 cut(s) 99, 369, 377, 456, 584, 969
DpnI GATC 3 cut(s) 296, 396, 503
DpnII GATC 3 cut(s) 294, 394, 501
Eam1104I CTCTTC 3 cut(s) 473, 543, 953
EarI CTCTTC 3 cut(s) 473, 543, 953
Ecl136II GAGCTC 1 cut(s) 927
Eco147I AGGCCT 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 929
Eco47I GGWCC 1 cut(s) 580
Eco53kI GAGCTC 1 cut(s) 927
Eco57I CTGAAG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 927
EcoRI GAATTC 1 cut(s) 895
EcoT38I GRGCYC 1 cut(s) 929
Esp3I CGTCTC 1 cut(s) 545
FaeI CATG 3 cut(s) 227, 350, 709
FalI AAGNNNNNCTT 4 cut(s) 381, 413, 850, 882
FatI CATG 3 cut(s) 223, 346, 705
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 7 cut(s) 212, 494, 497, 525, 528, 672, 891
FokI GGATG 1 cut(s) 814
FriOI GRGCYC 1 cut(s) 929
Fsp4HI GCNGC 7 cut(s) 212, 494, 497, 525, 528, 672, 891
FspBI CTAG 5 cut(s) 182, 531, 678, 711, 789
GlaI GCGC 2 cut(s) 6, 661
GluI GCNGC 7 cut(s) 212, 494, 497, 525, 528, 672, 891
GsuI CTGGAG 1 cut(s) 471
HaeIII GGCC 1 cut(s) 967
HgaI GACGC 2 cut(s) 227, 641
HhaI GCGC 2 cut(s) 7, 662
Hin1I GRCGYC 1 cut(s) 313
Hin1II CATG 3 cut(s) 227, 350, 709
Hin6I GCGC 2 cut(s) 5, 660
HinP1I GCGC 2 cut(s) 5, 660
HinfI GANTC 7 cut(s) 32, 118, 176, 461, 724, 779, 863
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 8 cut(s) 37, 66, 123, 466, 729, 742, 912, 937
Hpy188III TCNNGA 7 cut(s) 115, 164, 317, 398, 418, 578, 834
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 21, 532, 957
HpyCH4III ACNGT 2 cut(s) 106, 987
HpyCH4IV ACGT 3 cut(s) 244, 313, 331
HpyCH4V TGCA 1 cut(s) 878
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 668, 680, 890, 924
HpyF3I CTNAG 6 cut(s) 99, 369, 377, 456, 584, 969
HpySE526I ACGT 3 cut(s) 244, 313, 331
Hsp92I GRCGYC 1 cut(s) 313
Hsp92II CATG 3 cut(s) 227, 350, 709
HspAI GCGC 2 cut(s) 5, 660
Kzo9I GATC 3 cut(s) 294, 394, 501
LmnI GCTCC 2 cut(s) 452, 932
LpnPI CCDG 5 cut(s) 177, 435, 563, 672, 687
Lsp1109I GCAGC 5 cut(s) 223, 508, 511, 514, 658
LweI GCATC 3 cut(s) 114, 810, 928
MaeI CTAG 5 cut(s) 182, 531, 678, 711, 789
MaeII ACGT 3 cut(s) 244, 313, 331
MaeIII GTNAC 1 cut(s) 324
MalI GATC 3 cut(s) 296, 396, 503
MbiI CCGCTC 1 cut(s) 286
MboI GATC 3 cut(s) 294, 394, 501
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 929
MluCI AATT 6 cut(s) 471, 644, 784, 796, 895, 931
MlyI GAGTC 2 cut(s) 185, 872
MmeI TCCRAC 2 cut(s) 44, 174
MnlI CCTC 8 cut(s) 5, 60, 171, 451, 476, 661, 804, 841
MroXI GAANNNNTTC 3 cut(s) 31, 141, 405
MseI TTAA 2 cut(s) 273, 752
MwoI GCNNNNNNNGC 5 cut(s) 233, 668, 680, 890, 924
NdeII GATC 3 cut(s) 294, 394, 501
NlaIII CATG 3 cut(s) 227, 350, 709
NlaIV GGNNCC 1 cut(s) 39
NspI RCATGY 1 cut(s) 709
PaeR7I CTCGAG 1 cut(s) 832
PceI AGGCCT 1 cut(s) 967
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdmI GAANNNNTTC 3 cut(s) 31, 141, 405
PfeI GAWTC 5 cut(s) 32, 118, 461, 724, 779
PkrI GCNGC 7 cut(s) 213, 495, 498, 526, 529, 673, 892
PleI GAGTC 2 cut(s) 184, 871
PpsI GAGTC 2 cut(s) 184, 871
Psp124BI GAGCTC 1 cut(s) 929
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 580
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 2 cut(s) 334, 807
RsaNI GTAC 2 cut(s) 333, 806
SacI GAGCTC 1 cut(s) 929
SaqAI TTAA 2 cut(s) 273, 752
SatI GCNGC 7 cut(s) 212, 494, 497, 525, 528, 672, 891
Sau3AI GATC 3 cut(s) 294, 394, 501
Sau96I GGNCC 1 cut(s) 580
SchI GAGTC 2 cut(s) 185, 872
SduI GDGCHC 1 cut(s) 929
SfaNI GCATC 3 cut(s) 114, 810, 928
Sfr274I CTCGAG 1 cut(s) 832
SinI GGWCC 1 cut(s) 580
SlaI CTCGAG 1 cut(s) 832
SmlI CTYRAG 3 cut(s) 317, 832, 922
SmoI CTYRAG 3 cut(s) 317, 832, 922
Sse9I AATT 6 cut(s) 471, 644, 784, 796, 895, 931
SseBI AGGCCT 1 cut(s) 967
SsiI CCGC 4 cut(s) 53, 286, 493, 890
SspI AATATT 2 cut(s) 252, 514
SspMI CTAG 5 cut(s) 182, 531, 678, 711, 789
SstI GAGCTC 1 cut(s) 929
StuI AGGCCT 1 cut(s) 967
TaaI ACNGT 2 cut(s) 106, 987
TaiI ACGT 3 cut(s) 247, 316, 334
TaqI TCGA 3 cut(s) 71, 297, 833
TasI AATT 6 cut(s) 471, 644, 784, 796, 895, 931
TatI WGTACW 1 cut(s) 805
TauI GCSGC 2 cut(s) 496, 893
TfiI GAWTC 5 cut(s) 32, 118, 461, 724, 779
Tru1I TTAA 2 cut(s) 273, 752
Tru9I TTAA 2 cut(s) 273, 752
TseI GCWGC 5 cut(s) 211, 496, 524, 527, 671
TspDTI ATGAA 6 cut(s) 327, 639, 657, 732, 858, 888
TspGWI ACGGA 2 cut(s) 24, 736
VpaK11BI GGWCC 1 cut(s) 580
XapI RAATTY 3 cut(s) 784, 796, 895
XceI RCATGY 1 cut(s) 709
XhoI CTCGAG 1 cut(s) 832
XmnI GAANNNNTTC 3 cut(s) 31, 141, 405
XspI CTAG 5 cut(s) 182, 531, 678, 711, 789
ZraI GACGTC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.