Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002988.1

Orthogroup ID

OG0008484

Physical Location & Seq

Genomic Coordinates Reverse (-)

41896 .. 46463

Gene Structure 4568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002988.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atggctcacggcggctacggaaagcggagggtgaagcctgctgccggccgtcgctcccggacgggcttgggcgtcgagaagaagcccaagtccgcctccctcaagaatcagattcgctccgtcgagcgcatgctccgtaagaatctaccgcctgaagttagggaggttcaggaaaagaagttagaaggactcaagaaacagcaagatattcatactcggcttgcagtagaacgcaaaatatttttgcgagaccggaagataaaattttttgagagaagaaagatagagagaagaataagacgcttggagaaacttcaacgtactacagctgctcaggttcaagatgcagagaattctgtgcaactttccaacttgaaagaagatcttgaatatgttaggttctttcccaagaccgagaaatatgtcgctctgtttactggaggtgatgattcagagcttgttgataggagaaataggctgcgtaagcagattaaggccaatttaattgctgcagctgctagtgggaaggatttggaagaaacagggagtgaggatgatgggcttttggatctcagtgaagatgatttctttctaagcggaagctcaagtgatgaagcaaatgcagatgatgaatggacagataagagtacaagggaacaggcttccagtgcttctgggaaagcagcatctggcatgtcaagtgatgagagaaatcagagacagatttcagctagagctttgatgcctccccctaggccatcaagcaattctcgctcaagttcagtacgtgctcaatcaagattcggtccttcatcaagcaaaagttcatcaaaacgtgctgaaatgtctacatccagcaatacatctagtagcagaagtggaacttcttttaaagctaggggttcctcaagttcaggggcaactcaaagtagtaatctgagctccaactctgatgctcataaaccccgtagaaagaggaggccaaaaaagaaaaagcagcaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Efg1

Protein Analysis

335

Amino Acids

37.42

Weight (kDa)

10.52

Isoelectric Point (pI)

64.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04230 AT1G04230 AT5G43720
fragaria_vesca	FvH4_3g24470 FvH4_3g24470
malus_domestica	MD13G1204100.v1.1 MD16G1206200.v1.1
prunus_persica	Prupe.1G027200_v2.0.a1 Prupe.1G027200_v2.0.a1
pyrus_communis	pycom13g17740 pycom16g17340
rosa_chinensis	RchiOBHm_Chr5g0043971
rosa_laevigata	RLG00000034229
rosa_multiflora	Rmu_sc0002988.1_g000010 Rmu_sc0006669.1_g000008
rosa_roxburghii	Rroxscaffold_1G00037090
rosa_rugosa	Rorug05G0209200 Rorug05G0209300
rosa_samantha	Rh5AG293900 Rh5BG301900 Rh5CG329300 Rh5DG310900
rosa_wichuraiana	Rw5G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	848
AciI	CCGC	5 cut(s)	12, 25, 93, 149, 597
AclWI	GGATC	1 cut(s)	576
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	263, 352
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	322, 649, 786
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	317, 341, 376, 389
AluBI	AGCT	8 cut(s)	329, 457, 515, 603, 731, 737, 896, 942
AluI	AGCT	8 cut(s)	329, 457, 515, 603, 731, 737, 896, 942
Alw21I	GWGCWC	2 cut(s)	793, 944
Alw26I	GTCTC	2 cut(s)	243, 712
AlwI	GGATC	1 cut(s)	576
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	4 cut(s)	46, 495, 755, 980
ApeKI	GCWGC	8 cut(s)	41, 329, 478, 509, 512, 515, 683, 997
ApoI	RAATTY	2 cut(s)	263, 352
AspA2I	CCTAGG	1 cut(s)	752
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	806
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	43, 455
AvaII	GGWCC	1 cut(s)	806
AvrII	CCTAGG	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	944
Bbv12I	GWGCWC	2 cut(s)	793, 944
BbvI	GCAGC	7 cut(s)	28, 316, 465, 496, 502, 524, 695
BccI	CCATC	2 cut(s)	551, 766
BceAI	ACGGC	2 cut(s)	25, 33
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	243, 712
BfaI	CTAG	5 cut(s)	519, 732, 753, 867, 897
BfmI	CTRYAG	2 cut(s)	324, 510
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	9 cut(s)	13, 42, 330, 479, 510, 513, 516, 684, 998
BlnI	CCTAGG	1 cut(s)	752
BlsI	GCNGC	9 cut(s)	14, 43, 331, 480, 511, 514, 517, 685, 999
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	1 cut(s)	904
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	4 cut(s)	334, 695, 732, 943
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	5 cut(s)	86, 176, 589, 760, 892
BpuMI	CCSGG	1 cut(s)	58
BsaAI	YACGTR	1 cut(s)	788
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	752
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	442, 666
BseDI	CCNNGG	1 cut(s)	752
BseGI	GGATG	2 cut(s)	559, 851
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	3 cut(s)	347, 586, 929
BseNI	ACTGG	2 cut(s)	442, 666
BseRI	GAGGAG	1 cut(s)	991
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	7 cut(s)	28, 316, 465, 496, 502, 524, 695
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	4 cut(s)	48, 497, 757, 982
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	793, 944
BsiSI	CCGG	3 cut(s)	45, 58, 253
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	243, 712
BsnI	GGCC	4 cut(s)	48, 497, 757, 982
Bso31I	GGTCTC	1 cut(s)	243
Bsp1286I	GDGCHC	2 cut(s)	793, 944
Bsp143I	GATC	2 cut(s)	382, 568
BspACI	CCGC	5 cut(s)	12, 25, 93, 149, 597
BspANI	GGCC	4 cut(s)	48, 497, 757, 982
BspCNI	CTCAG	3 cut(s)	346, 585, 930
BspLI	GGNNCC	1 cut(s)	904
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	1 cut(s)	576
BspTNI	GGTCTC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	442, 666
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	752
BssMI	GATC	2 cut(s)	382, 568
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	752
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	788
BstC8I	GCNNGC	5 cut(s)	39, 46, 131, 222, 1002
BstDEI	CTNAG	4 cut(s)	333, 572, 593, 938
BstF5I	GGATG	2 cut(s)	559, 851
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	385, 571
BstMAI	GTCTC	2 cut(s)	243, 712
BstMBI	GATC	2 cut(s)	382, 568
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	484, 515, 668, 771
BstNSI	RCATGY	2 cut(s)	133, 697
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	2 cut(s)	324, 510
BstV1I	GCAGC	7 cut(s)	28, 316, 465, 496, 502, 524, 695
BstX2I	RGATCY	2 cut(s)	382, 568
BstYI	RGATCY	2 cut(s)	382, 568
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	4 cut(s)	48, 497, 757, 982
BtsCI	GGATG	2 cut(s)	559, 851
BtsIMutI	CAGTG	2 cut(s)	580, 673
Cac8I	GCNNGC	5 cut(s)	39, 46, 131, 222, 1002
CaiI	CAGNNNCTG	1 cut(s)	689
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	806
CseI	GACGC	2 cut(s)	61, 309
Csp6I	GTAC	3 cut(s)	321, 648, 785
CviAII	CATG	2 cut(s)	130, 694
CviQI	GTAC	3 cut(s)	321, 648, 785
DdeI	CTNAG	4 cut(s)	333, 572, 593, 938
DpnI	GATC	2 cut(s)	384, 570
DpnII	GATC	2 cut(s)	382, 568
DraI	TTTAAA	1 cut(s)	892
EaeI	YGGCCR	1 cut(s)	46
EagI	CGGCCG	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	942
EclXI	CGGCCG	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	752
Eco24I	GRGCYC	1 cut(s)	944
Eco31I	GGTCTC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	806
Eco52I	CGGCCG	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	942
Eco57I	CTGAAG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	942
EcoRI	GAATTC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	752
EcoT38I	GRGCYC	1 cut(s)	944
ErhI	CCWWGG	1 cut(s)	752
FaeI	CATG	2 cut(s)	133, 697
FaiI	YATR	6 cut(s)	131, 213, 393, 423, 695, 960
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 868, 900
FatI	CATG	2 cut(s)	129, 693
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	9 cut(s)	13, 42, 330, 479, 510, 513, 516, 684, 998
FokI	GGATG	2 cut(s)	566, 838
FriOI	GRGCYC	1 cut(s)	944
Fsp4HI	GCNGC	9 cut(s)	13, 42, 330, 479, 510, 513, 516, 684, 998
FspBI	CTAG	5 cut(s)	519, 732, 753, 867, 897
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	9 cut(s)	13, 42, 330, 479, 510, 513, 516, 684, 998
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	4 cut(s)	48, 497, 757, 982
HapII	CCGG	3 cut(s)	45, 58, 253
HgaI	GACGC	2 cut(s)	61, 309
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	133, 697
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	6 cut(s)	106, 112, 142, 189, 449, 801
HpaII	CCGG	3 cut(s)	45, 58, 253
HphI	GGTGA	2 cut(s)	43, 455
Hpy166II	GTNNAC	2 cut(s)	435, 849
Hpy188I	TCNGA	5 cut(s)	111, 454, 717, 939, 952
Hpy188III	TCNNGA	7 cut(s)	76, 103, 170, 193, 341, 386, 798
Hpy8I	GTNNAC	2 cut(s)	435, 849
Hpy99I	CGWCG	3 cut(s)	54, 77, 125
HpyAV	CCTTC	3 cut(s)	179, 520, 819
HpyCH4IV	ACGT	3 cut(s)	319, 787, 835
HpyCH4V	TGCA	5 cut(s)	224, 347, 361, 512, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	484, 515, 668, 771
HpyF3I	CTNAG	4 cut(s)	333, 572, 593, 938
HpySE526I	ACGT	3 cut(s)	319, 787, 835
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	133, 697
HspAI	GCGC	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	382, 568
LmnI	GCTCC	4 cut(s)	59, 122, 138, 947
Lsp1109I	GCAGC	7 cut(s)	28, 316, 465, 496, 502, 524, 695
LweI	GCATC	4 cut(s)	334, 695, 732, 943
MaeI	CTAG	5 cut(s)	519, 732, 753, 867, 897
MaeII	ACGT	3 cut(s)	319, 787, 835
MalI	GATC	2 cut(s)	384, 570
MboI	GATC	2 cut(s)	382, 568
MboII	GAAGA	7 cut(s)	91, 268, 288, 303, 392, 548, 590
MflI	RGATCY	2 cut(s)	382, 568
MhlI	GDGCHC	2 cut(s)	793, 944
MluCI	AATT	5 cut(s)	263, 352, 499, 504, 766
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	2 cut(s)	393, 969
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	3 cut(s)	492, 503, 891
MspA1I	CMGCKG	2 cut(s)	329, 515
MspI	CCGG	3 cut(s)	45, 58, 253
MspR9I	CCNGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	4 cut(s)	484, 515, 668, 771
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	382, 568
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	133, 697
NlaIV	GGNNCC	1 cut(s)	904
NmeAIII	GCCGAG	1 cut(s)	196
NspI	RCATGY	2 cut(s)	133, 697
PaeI	GCATGC	1 cut(s)	133
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	5 cut(s)	106, 112, 142, 449, 801
PfoI	TCCNGGA	1 cut(s)	56
PkrI	GCNGC	9 cut(s)	14, 43, 331, 480, 511, 514, 517, 685, 999
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Ppu21I	YACGTR	1 cut(s)	788
Psp124BI	GAGCTC	1 cut(s)	944
PspN4I	GGNNCC	1 cut(s)	904
PspPI	GGNCC	1 cut(s)	806
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	2 cut(s)	382, 568
PvuII	CAGCTG	2 cut(s)	329, 515
RsaI	GTAC	3 cut(s)	322, 649, 786
RsaNI	GTAC	3 cut(s)	321, 648, 785
SacI	GAGCTC	1 cut(s)	944
SaqAI	TTAA	3 cut(s)	492, 503, 891
SatI	GCNGC	9 cut(s)	13, 42, 330, 479, 510, 513, 516, 684, 998
Sau3AI	GATC	2 cut(s)	382, 568
Sau96I	GGNCC	1 cut(s)	806
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	2 cut(s)	793, 944
SfaNI	GCATC	4 cut(s)	334, 695, 732, 943
SfcI	CTRYAG	2 cut(s)	324, 510
SinI	GGWCC	1 cut(s)	806
SmlI	CTYRAG	5 cut(s)	101, 191, 604, 775, 907
SmoI	CTYRAG	5 cut(s)	101, 191, 604, 775, 907
SphI	GCATGC	1 cut(s)	133
Sse9I	AATT	5 cut(s)	263, 352, 499, 504, 766
SsiI	CCGC	5 cut(s)	12, 25, 93, 149, 597
SspI	AATATT	1 cut(s)	240
SspMI	CTAG	5 cut(s)	519, 732, 753, 867, 897
SstI	GAGCTC	1 cut(s)	944
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	752
TaiI	ACGT	3 cut(s)	322, 790, 838
TaqI	TCGA	2 cut(s)	75, 123
TaqII	GACCGA	2 cut(s)	428, 794
TasI	AATT	5 cut(s)	263, 352, 499, 504, 766
TatI	WGTACW	1 cut(s)	647
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	5 cut(s)	106, 112, 142, 449, 801
Tru1I	TTAA	3 cut(s)	492, 503, 891
Tru9I	TTAA	3 cut(s)	492, 503, 891
TscAI	CASTG	2 cut(s)	580, 673
TseI	GCWGC	8 cut(s)	41, 329, 478, 509, 512, 515, 683, 997
TspDTI	ATGAA	5 cut(s)	200, 627, 645, 801, 816
TspGWI	ACGGA	3 cut(s)	33, 109, 125
TspRI	CASTG	2 cut(s)	580, 673
VpaK11BI	GGWCC	1 cut(s)	806
XapI	RAATTY	2 cut(s)	263, 352
XceI	RCATGY	2 cut(s)	133, 697
XmaJI	CCTAGG	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	848
XspI	CTAG	5 cut(s)	519, 732, 753, 867, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.