Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008484

Physical Location & Seq

Genomic Coordinates Forward (+)

20922230 .. 20924337

Gene Structure 2108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0209300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTGGCCGGGCTGTGCGAGGAGTCCTGTCTGCGGCGGCAGAAGAAGTTGTAATTGATGGGATTGAAACTAATCCTGATCGTGTTCGACACTTTCTGGCAGGGGAGATCCTCACGACGAAATCCCTTAATAAGGGTACTATTACAAAGGTTGAAATGGTTGTGACACAAGGAGATGAAGAAGGGAAGAAGATTGCAGCAATGGTGAGGCAGATTGGGGCTTCTAAGTTTGTTCTTGGACTCCATGATCACAGCTTTCTTTACAAGTTGGCAATGGCCCAAGGCAACAATACTGCAAACAACTTCATGAATTGCAGAGTCCTAGCCATCAAGCAACCATCTTCTTCACCATTGAGGATCAACAAGGCCAGTGCTCCTAGTGATCAAAAAGTTTTCAGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Efg1

Protein Analysis

134

Amino Acids

14.43

Weight (kDa)

9.61

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04230 AT1G04230 AT5G43720
fragaria_vesca	FvH4_3g24470 FvH4_3g24470
malus_domestica	MD13G1204100.v1.1 MD16G1206200.v1.1
prunus_persica	Prupe.1G027200_v2.0.a1 Prupe.1G027200_v2.0.a1
pyrus_communis	pycom13g17740 pycom16g17340
rosa_chinensis	RchiOBHm_Chr5g0043971
rosa_laevigata	RLG00000034229
rosa_multiflora	Rmu_sc0002988.1_g000010 Rmu_sc0006669.1_g000008
rosa_roxburghii	Rroxscaffold_1G00037090
rosa_rugosa	Rorug05G0209200 Rorug05G0209300
rosa_samantha	Rh5AG293900 Rh5BG301900 Rh5CG329300 Rh5DG310900
rosa_wichuraiana	Rw5G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 38
AclWI	GGATC	2 cut(s)	103, 365
AcoI	YGGCCR	1 cut(s)	7
AfaI	GTAC	2 cut(s)	139, 400
AfiI	CCNNNNNNNGG	2 cut(s)	34, 133
AgsI	TTSAA	2 cut(s)	68, 155
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
Alw21I	GWGCWC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	103, 365
AlwNI	CAGNNNCTG	1 cut(s)	402
AoxI	GGCC	3 cut(s)	7, 276, 366
ApeKI	GCWGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	217, 339
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	3 cut(s)	53, 335, 346
BclI	TGATCA	2 cut(s)	247, 382
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	2 cut(s)	323, 378
BisI	GCNGC	3 cut(s)	36, 39, 198
BlsI	GCNGC	3 cut(s)	37, 40, 199
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 133
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	2 cut(s)	207, 279
BseDI	CCNNGG	1 cut(s)	280
BseLI	CCNNNNNNNGG	2 cut(s)	34, 133
BseMI	GCAATG	2 cut(s)	207, 279
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	3 cut(s)	9, 278, 368
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	34, 133
BsnI	GGCC	3 cut(s)	9, 278, 368
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	5 cut(s)	79, 108, 247, 357, 382
BspACI	CCGC	2 cut(s)	35, 38
BspANI	GGCC	3 cut(s)	9, 278, 368
BspHI	TCATGA	1 cut(s)	306
BspPI	GGATC	2 cut(s)	103, 365
BsrDI	GCAATG	2 cut(s)	207, 279
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	5 cut(s)	79, 108, 247, 357, 382
BssT1I	CCWWGG	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	225
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstKTI	GATC	5 cut(s)	82, 111, 250, 360, 385
BstMBI	GATC	5 cut(s)	79, 108, 247, 357, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	9, 278, 368
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	402
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	138, 399
CviAII	CATG	2 cut(s)	245, 307
CviJI	RGCY	8 cut(s)	5, 9, 14, 221, 255, 278, 326, 368
CviKI_1	RGCY	8 cut(s)	5, 9, 14, 221, 255, 278, 326, 368
CviQI	GTAC	2 cut(s)	138, 399
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	5 cut(s)	81, 110, 249, 359, 384
DpnII	GATC	5 cut(s)	79, 108, 247, 357, 382
EaeI	YGGCCR	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	2 cut(s)	248, 310
FaiI	YATR	2 cut(s)	246, 308
FatI	CATG	2 cut(s)	244, 306
FbaI	TGATCA	2 cut(s)	247, 382
Fnu4HI	GCNGC	3 cut(s)	36, 39, 198
Fsp4HI	GCNGC	3 cut(s)	36, 39, 198
FspBI	CTAG	2 cut(s)	323, 378
GluI	GCNGC	3 cut(s)	36, 39, 198
HaeIII	GGCC	3 cut(s)	9, 278, 368
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	2 cut(s)	248, 310
HinfI	GANTC	3 cut(s)	24, 240, 318
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	2 cut(s)	217, 339
Hpy188III	TCNNGA	3 cut(s)	77, 115, 307
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	197, 296, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	248, 310
Ksp22I	TGATCA	2 cut(s)	247, 382
Kzo9I	GATC	5 cut(s)	79, 108, 247, 357, 382
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	6 cut(s)	23, 41, 83, 87, 90, 382
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	323, 378
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	5 cut(s)	81, 110, 249, 359, 384
MboI	GATC	5 cut(s)	79, 108, 247, 357, 382
MboII	GAAGA	6 cut(s)	56, 191, 199, 202, 333, 336
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	2 cut(s)	54, 310
MlyI	GAGTC	3 cut(s)	33, 234, 327
MnlI	CCTC	4 cut(s)	14, 122, 201, 348
MseI	TTAA	1 cut(s)	129
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	5 cut(s)	79, 108, 247, 357, 382
NlaIII	CATG	2 cut(s)	248, 310
NmuCI	GTSAC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	37, 40, 199
PleI	GAGTC	3 cut(s)	32, 234, 326
PpsI	GAGTC	3 cut(s)	32, 234, 326
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	108
RsaI	GTAC	2 cut(s)	139, 400
RsaNI	GTAC	2 cut(s)	138, 399
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	36, 39, 198
Sau3AI	GATC	5 cut(s)	79, 108, 247, 357, 382
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	3 cut(s)	33, 234, 327
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	3 cut(s)	153, 257, 404
Sse9I	AATT	2 cut(s)	54, 310
SsiI	CCGC	2 cut(s)	35, 38
SspMI	CTAG	2 cut(s)	323, 378
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	280
TaqI	TCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	54, 310
TauI	GCSGC	2 cut(s)	38, 41
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	192, 295, 323
TspRI	CASTG	1 cut(s)	376
XagI	CCTNNNNNAGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	323, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.