Prupe.1G027200_v2.0.a1

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008484
Physical Location & Seq
Forward (+)
1899262 .. 1903561
4300 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G027200.1

Sequence Viewer

Length: 1047 bp
ATGGCTCATGGTGGCTACGCCAAGCGGAGGGTGAGTCCGGCGGGAGGACGACGGCCCAAGTCGGCGTTGGGCCCAGAGAAGAAGCCCAAAACCGTCAACCTCAAAAAGCAGATTCGCTCCATCGAGCGCCTGCTCCGTAAGAATCTATCAGCTGAAATGAAGGAGGCTCAGGAAAAGAAGTTAGAAGGACTCAAGAAACAGCAGGAGATTCAGTTTCGTCTTGCTGTGGAGCGCAAGATATTTATGCGTGACAGGAAGATTAAGTTTTTCGAGAGAAGAAAAATAGAGAGAAGAATAAGACGTTTGGAGAAACTCCAACGTGCTTCTTCGTCTGGTCAGGCACAAGATGCAGAGAGTTCTGTGCAACTTTCCAAATTGAAAGAAGATCTTGAATATGTTAGGTTCTTTCCCAAGACCGAGAAGTATGTCCCTTTGTTTACTGGTGGTGAAGTTTCAGATATAGTTGATAAGAGAAATAAGTTGCGTGAGAAGATTAAGGCCAATTTAATTGCTGCAGCAGCTAGTGGAAAGGATGTTGAAGAAACAGGGAGCGAGGACGATGGGCTTCTGGATCTGAGTGAAGATGATTTCTTCCTAAATGGGAGTTCAAGTGATGAAGCAGATGCAGACGATGAATGGACGGATAAGAGTACAAGAGAACAGGCTTCCAGTGCTTCTGGAAAAGCAACTTCTGGCATGTCCAGTGATGAGAGAAATCAGCGACAGGTTTCTGCTAGAGCTTTGATGCCTCCTCCCCGGCCATCTAGCAATTCTCGCACAAGTTCAGTTCGTGCTCAGTCAAGGTTTGGTCCTTCATCAAGCAAAAATTCCTCAAAAAAGATTGCTGAAATGTCTACATCCAGCAATACATCAAATAGCAGAAGTGGGACTTCCTTCAGTACATCAACTAGCAGAAGTGGAACTTCCTTCAAAGCTAGGGGATCCTCAAATTCAACAGCTGCCCAAAGTAGTAATTTGAGCTCCAACTCTGATGCTCGTAAGCCCCGTAGAAAGAGGAGGCCAAAGAAGAAAAAGCAGCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Efg1

Protein Analysis

349

Amino Acids

38.73

Weight (kDa)

10.4

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 854
AciI CCGC 2 cut(s) 25, 41
AclWI GGATC 3 cut(s) 579, 936, 949
AcoI YGGCCR 1 cut(s) 758
AcsI RAATTY 2 cut(s) 826, 949
AcuI CTGAAG 1 cut(s) 880
AfaI GTAC 2 cut(s) 652, 901
AfiI CCNNNNNNNGG 2 cut(s) 27, 44
AgsI TTSAA 6 cut(s) 379, 392, 539, 609, 931, 954
AluBI AGCT 6 cut(s) 152, 521, 740, 935, 959, 981
AluI AGCT 6 cut(s) 152, 521, 740, 935, 959, 981
Alw21I GWGCWC 2 cut(s) 796, 983
AlwI GGATC 3 cut(s) 579, 936, 949
AoxI GGCC 5 cut(s) 53, 70, 498, 758, 1019
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 5 cut(s) 512, 515, 518, 959, 1036
ApoI RAATTY 2 cut(s) 826, 949
AspLEI GCGC 2 cut(s) 129, 234
AspS9I GGNCC 4 cut(s) 54, 70, 71, 809
AsuC2I CCSGG 1 cut(s) 757
AsuHPI GGTGA 2 cut(s) 43, 458
AvaII GGWCC 1 cut(s) 809
BaeGI GKGCMC 1 cut(s) 74
BamHI GGATCC 1 cut(s) 941
BanII GRGCYC 2 cut(s) 74, 983
Bbv12I GWGCWC 2 cut(s) 796, 983
BbvI GCAGC 4 cut(s) 499, 527, 530, 946
BccI CCATC 3 cut(s) 128, 554, 769
BceAI ACGGC 1 cut(s) 68
BcnI CCSGG 1 cut(s) 757
BfaI CTAG 5 cut(s) 522, 735, 765, 909, 936
BfmI CTRYAG 1 cut(s) 513
BfoI RGCGCY 1 cut(s) 130
BglII AGATCT 1 cut(s) 385
BisI GCNGC 5 cut(s) 513, 516, 519, 960, 1037
BlsI GCNGC 5 cut(s) 514, 517, 520, 961, 1038
Bme1390I CCNGG 1 cut(s) 757
Bme18I GGWCC 1 cut(s) 809
BmgT120I GGNCC 4 cut(s) 54, 70, 71, 809
BmiI GGNNCC 2 cut(s) 72, 943
BmrFI CCNGG 1 cut(s) 757
BmsI GCATC 4 cut(s) 337, 613, 735, 982
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 757
BsaJI CCNNGG 1 cut(s) 755
BsaXI ACNNNNNCTCC 6 cut(s) 19, 49, 197, 227, 595, 625
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 44
Bse1I ACTGG 3 cut(s) 445, 669, 702
BseDI CCNNGG 1 cut(s) 755
BseGI GGATG 2 cut(s) 538, 857
BseLI CCNNNNNNNGG 2 cut(s) 27, 44
BseMII CTCAG 3 cut(s) 182, 566, 809
BseNI ACTGG 3 cut(s) 445, 669, 702
BseRI GAGGAG 2 cut(s) 741, 1030
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 4 cut(s) 499, 527, 530, 946
BshFI GGCC 5 cut(s) 55, 72, 500, 760, 1021
BsiHKAI GWGCWC 2 cut(s) 796, 983
BsiSI CCGG 2 cut(s) 38, 757
BslFI GGGAC 2 cut(s) 413, 901
BslI CCNNNNNNNGG 2 cut(s) 27, 44
BsmFI GGGAC 2 cut(s) 413, 901
BsnI GGCC 5 cut(s) 55, 72, 500, 760, 1021
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 3 cut(s) 74, 796, 983
Bsp143I GATC 3 cut(s) 385, 571, 941
BspACI CCGC 2 cut(s) 25, 41
BspANI GGCC 5 cut(s) 55, 72, 500, 760, 1021
BspCNI CTCAG 3 cut(s) 181, 567, 808
BspLI GGNNCC 2 cut(s) 72, 943
BspMAI CTGCAG 1 cut(s) 517
BspPI GGATC 3 cut(s) 579, 936, 949
BsrI ACTGG 3 cut(s) 445, 669, 702
BssECI CCNNGG 1 cut(s) 755
BssMI GATC 3 cut(s) 385, 571, 941
Bst4CI ACNGT 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 3 cut(s) 168, 575, 795
BstF5I GGATG 2 cut(s) 538, 857
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 2 cut(s) 129, 234
BstKTI GATC 3 cut(s) 388, 574, 944
BstMBI GATC 3 cut(s) 385, 571, 941
BstMWI GCNNNNNNNGC 4 cut(s) 347, 518, 671, 774
BstNSI RCATGY 1 cut(s) 700
BstSCI CCNGG 1 cut(s) 755
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 1 cut(s) 74
BstV1I GCAGC 4 cut(s) 499, 527, 530, 946
BstX2I RGATCY 3 cut(s) 385, 571, 941
BstYI RGATCY 3 cut(s) 385, 571, 941
BsuRI GGCC 5 cut(s) 55, 72, 500, 760, 1021
BtsCI GGATG 2 cut(s) 538, 857
BtsIMutI CAGTG 2 cut(s) 676, 709
Cac8I GCNNGC 1 cut(s) 131
CfoI GCGC 2 cut(s) 129, 234
Cfr13I GGNCC 4 cut(s) 54, 70, 71, 809
Csp6I GTAC 2 cut(s) 651, 900
CviAII CATG 2 cut(s) 8, 697
CviQI GTAC 2 cut(s) 651, 900
DdeI CTNAG 3 cut(s) 168, 575, 795
DpnI GATC 3 cut(s) 387, 573, 943
DpnII GATC 3 cut(s) 385, 571, 941
EaeI YGGCCR 1 cut(s) 758
Ecl136II GAGCTC 1 cut(s) 981
Eco24I GRGCYC 2 cut(s) 74, 983
Eco47I GGWCC 1 cut(s) 809
Eco53kI GAGCTC 1 cut(s) 981
Eco57I CTGAAG 1 cut(s) 880
EcoICRI GAGCTC 1 cut(s) 981
EcoT38I GRGCYC 2 cut(s) 74, 983
FaeI CATG 2 cut(s) 11, 700
FaiI YATR 6 cut(s) 9, 245, 396, 426, 461, 698
FalI AAGNNNNNCTT 6 cut(s) 372, 404, 874, 906, 907, 939
FaqI GGGAC 2 cut(s) 413, 901
FatI CATG 2 cut(s) 7, 696
FauI CCCGC 1 cut(s) 34
FblI GTMKAC 1 cut(s) 854
Fnu4HI GCNGC 5 cut(s) 513, 516, 519, 960, 1037
FokI GGATG 2 cut(s) 545, 844
FriOI GRGCYC 2 cut(s) 74, 983
Fsp4HI GCNGC 5 cut(s) 513, 516, 519, 960, 1037
FspBI CTAG 5 cut(s) 522, 735, 765, 909, 936
GlaI GCGC 2 cut(s) 128, 233
GluI GCNGC 5 cut(s) 513, 516, 519, 960, 1037
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 5 cut(s) 55, 72, 500, 760, 1021
HapII CCGG 2 cut(s) 38, 757
HhaI GCGC 2 cut(s) 129, 234
Hin1II CATG 2 cut(s) 11, 700
Hin6I GCGC 2 cut(s) 127, 232
HinP1I GCGC 2 cut(s) 127, 232
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 5 cut(s) 34, 112, 142, 189, 208
HpaII CCGG 2 cut(s) 38, 757
HphI GGTGA 2 cut(s) 43, 458
Hpy166II GTNNAC 3 cut(s) 97, 438, 855
Hpy188I TCNGA 3 cut(s) 457, 576, 991
Hpy188III TCNNGA 6 cut(s) 170, 193, 271, 389, 569, 678
Hpy8I GTNNAC 3 cut(s) 97, 438, 855
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 5 cut(s) 154, 179, 822, 904, 937
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 2 cut(s) 301, 319
HpyCH4V TGCA 4 cut(s) 350, 364, 515, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 518, 671, 774
HpyF3I CTNAG 3 cut(s) 168, 575, 795
HpySE526I ACGT 2 cut(s) 301, 319
Hsp92II CATG 2 cut(s) 11, 700
HspAI GCGC 2 cut(s) 127, 232
Kzo9I GATC 3 cut(s) 385, 571, 941
LmnI GCTCC 5 cut(s) 122, 138, 229, 549, 986
Lsp1109I GCAGC 4 cut(s) 499, 527, 530, 946
LweI GCATC 4 cut(s) 337, 613, 735, 982
MaeI CTAG 5 cut(s) 522, 735, 765, 909, 936
MaeII ACGT 2 cut(s) 301, 319
MaeIII GTNAC 1 cut(s) 248
MalI GATC 3 cut(s) 387, 573, 943
MboI GATC 3 cut(s) 385, 571, 941
MflI RGATCY 3 cut(s) 385, 571, 941
MhlI GDGCHC 3 cut(s) 74, 796, 983
MluCI AATT 7 cut(s) 374, 502, 507, 769, 826, 949, 973
MlyI GAGTC 2 cut(s) 43, 183
MmeI TCCRAC 2 cut(s) 340, 1008
MseI TTAA 3 cut(s) 261, 495, 506
MspA1I CMGCKG 2 cut(s) 152, 959
MspI CCGG 2 cut(s) 38, 757
MspR9I CCNGG 1 cut(s) 757
MwoI GCNNNNNNNGC 4 cut(s) 347, 518, 671, 774
NciI CCSGG 1 cut(s) 757
NdeII GATC 3 cut(s) 385, 571, 941
NlaIII CATG 2 cut(s) 11, 700
NlaIV GGNNCC 2 cut(s) 72, 943
NmuCI GTSAC 1 cut(s) 248
NspI RCATGY 1 cut(s) 700
PcsI WCGNNNNNNNCGW 1 cut(s) 1003
PfeI GAWTC 3 cut(s) 112, 142, 208
PkrI GCNGC 5 cut(s) 514, 517, 520, 961, 1038
PleI GAGTC 2 cut(s) 42, 183
PpsI GAGTC 2 cut(s) 42, 183
Psp124BI GAGCTC 1 cut(s) 983
PspN4I GGNNCC 2 cut(s) 72, 943
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 4 cut(s) 54, 70, 71, 809
PstI CTGCAG 1 cut(s) 517
PsuI RGATCY 3 cut(s) 385, 571, 941
PvuII CAGCTG 2 cut(s) 152, 959
RsaI GTAC 2 cut(s) 652, 901
RsaNI GTAC 2 cut(s) 651, 900
SacI GAGCTC 1 cut(s) 983
SaqAI TTAA 3 cut(s) 261, 495, 506
SatI GCNGC 5 cut(s) 513, 516, 519, 960, 1037
Sau3AI GATC 3 cut(s) 385, 571, 941
Sau96I GGNCC 4 cut(s) 54, 70, 71, 809
SchI GAGTC 2 cut(s) 43, 183
ScrFI CCNGG 1 cut(s) 757
SduI GDGCHC 3 cut(s) 74, 796, 983
SfaNI GCATC 4 cut(s) 337, 613, 735, 982
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 1 cut(s) 809
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 7 cut(s) 374, 502, 507, 769, 826, 949, 973
SsiI CCGC 2 cut(s) 25, 41
SspMI CTAG 5 cut(s) 522, 735, 765, 909, 936
SstI GAGCTC 1 cut(s) 983
StyD4I CCNGG 1 cut(s) 755
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 2 cut(s) 304, 322
TaqI TCGA 2 cut(s) 123, 270
TaqII GACCGA 1 cut(s) 431
TasI AATT 7 cut(s) 374, 502, 507, 769, 826, 949, 973
TatI WGTACW 2 cut(s) 650, 899
TfiI GAWTC 3 cut(s) 112, 142, 208
Tru1I TTAA 3 cut(s) 261, 495, 506
Tru9I TTAA 3 cut(s) 261, 495, 506
TscAI CASTG 2 cut(s) 676, 709
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 5 cut(s) 512, 515, 518, 959, 1036
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 4 cut(s) 173, 630, 648, 804
TspGWI ACGGA 2 cut(s) 125, 656
TspRI CASTG 2 cut(s) 676, 709
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 2 cut(s) 826, 949
XceI RCATGY 1 cut(s) 700
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 854
XspI CTAG 5 cut(s) 522, 735, 765, 909, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.