FvH4_3g24470

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008484
Physical Location & Seq
Reverse (-)
17523216 .. 17528382
5167 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24470.t2

Sequence Viewer

Length: 1008 bp
ATGGCTCATGGCGGCTATGTAAAGCGGAGGGTGAAAACTGCTGCCGGCCGCCGCTCCCGCACGGGGGGATTGGGCGTCGAGAAGAAGCCCAAGTCCGCCTCCCTCAAGAATCAGATTCGCTCCGTCGAGCGCATGCTCCGTAAGAATCTACCGCCTGAAGTTAGGGAGGTTCAGGAGAAGAAGTTAGAAGGACTCAAGAAACAGCAAGATATTCATACCCGGCTTGCGGTGGAACGTAAAATATTTTTGCGAGACCGAAAGATAAAGTTCTTTGAGAGAAGAAAGATAGAGAGAAGAATAAGACGCTTGGAGAGACTTCAACGTACTGCTGCTCAGGCGCAAGATGCAGAAAATTCTGTGCAACTTTCCAAATTGAAAGAAGATCTTGAATATGTTAGGTTCTTTCCCAAGACCGAGAAATATGTTGCTTTGTTTACTGGAGGTGACGATTCAGAGGTTGTTGATAGGAGAAATAGGCTGCGTAAGCAGATTAAGGCCAATTTAATTGCTGCAGCTGCTAGTGGCAAGGATTTGGAAGAAACAGGGAGTGAGGACGACGGGCTTTTGGATCTTAGTGAAGATGATTTCTTCCTAAGTGGAAGCTCAAGTGATGAAGCAAATGCAGATGACGAATGGACAGATAAGAGTACAAGGGAACAGGCTTCCAGTGCCTCTGGGAAAGCAGCATCTGGCATGTCCAGTGATGAGAGAAATCAGAGACAGATTTCAGCTAGAGCTTTGATGCCTCCCCCTGGACCATCAAGTAATTATCGCTCAAGTTCAACACGTGCTCAATCGAGATTCGGTCCTTCATCAAGCAAAAGTTCATCAAAACGTGCTGAAGTGTCTACATCCTGCAATTCATCAAGTGGCAGAAGTGGAACTTCTTTTAAAGCTAGGGGTTCCTCAAGTTCAGGGGCAACTCCAAGTAGTAATCTGAGCTCCAACTCTGATGCTCATAAACCACGTAGAAAGAGGAGGCCAAAAAAGAAAAAGCAGCAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Efg1

Protein Analysis

336

Amino Acids

37.31

Weight (kDa)

10.43

Isoelectric Point (pI)

62.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Efg1 PF10153 35 - 145 1.2e-28 rRNA-processing protein Efg1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 848
AciI CCGC 8 cut(s) 12, 25, 49, 52, 58, 96, 152, 227
AclWI GGATC 1 cut(s) 576
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 2 cut(s) 177, 861
AcvI CACGTG 1 cut(s) 788
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 325, 649
AfiI CCNNNNNNNGG 4 cut(s) 63, 64, 226, 752
AflIII ACRYGT 1 cut(s) 785
AgsI TTSAA 4 cut(s) 320, 376, 389, 783
AjnI CCWGG 1 cut(s) 751
AluBI AGCT 6 cut(s) 515, 603, 731, 737, 896, 942
AluI AGCT 6 cut(s) 515, 603, 731, 737, 896, 942
Alw21I GWGCWC 2 cut(s) 793, 944
Alw26I GTCTC 3 cut(s) 246, 307, 712
AlwI GGATC 1 cut(s) 576
AlwNI CAGNNNCTG 1 cut(s) 689
AoxI GGCC 3 cut(s) 46, 495, 980
ApeKI GCWGC 8 cut(s) 41, 329, 478, 509, 512, 515, 683, 997
ApoI RAATTY 1 cut(s) 352
AspLEI GCGC 2 cut(s) 132, 340
AspS9I GGNCC 2 cut(s) 755, 806
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 43, 455
AvaII GGWCC 2 cut(s) 755, 806
BanII GRGCYC 1 cut(s) 944
BbrPI CACGTG 1 cut(s) 788
Bbv12I GWGCWC 2 cut(s) 793, 944
BbvI GCAGC 7 cut(s) 28, 316, 465, 496, 502, 524, 695
BccI CCATC 1 cut(s) 766
BciT130I CCWGG 1 cut(s) 753
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 3 cut(s) 246, 307, 712
BfaI CTAG 3 cut(s) 519, 732, 897
BfmI CTRYAG 1 cut(s) 510
BglII AGATCT 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 220, 753
Bme18I GGWCC 2 cut(s) 755, 806
BmgT120I GGNCC 2 cut(s) 755, 806
BmiI GGNNCC 1 cut(s) 904
BmrFI CCNGG 2 cut(s) 220, 753
BmsI GCATC 4 cut(s) 334, 695, 732, 943
BpmI CTGGAG 1 cut(s) 459
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 5 cut(s) 89, 179, 589, 760, 892
BpuMI CCSGG 1 cut(s) 220
BsaAI YACGTR 2 cut(s) 788, 968
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 751
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 64, 226, 752
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 442, 666, 699
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 1 cut(s) 751
BseGI GGATG 1 cut(s) 851
BseLI CCNNNNNNNGG 4 cut(s) 63, 64, 226, 752
BseMII CTCAG 2 cut(s) 347, 929
BseNI ACTGG 3 cut(s) 442, 666, 699
BseRI GAGGAG 1 cut(s) 991
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 7 cut(s) 28, 316, 465, 496, 502, 524, 695
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 3 cut(s) 48, 497, 982
BsiEI CGRYCG 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 793, 944
BsiSI CCGG 2 cut(s) 45, 220
BslI CCNNNNNNNGG 4 cut(s) 63, 64, 226, 752
BsmAI GTCTC 3 cut(s) 246, 307, 712
BsnI GGCC 3 cut(s) 48, 497, 982
Bso31I GGTCTC 1 cut(s) 246
Bsp1286I GDGCHC 2 cut(s) 793, 944
Bsp143I GATC 2 cut(s) 382, 568
BspACI CCGC 8 cut(s) 12, 25, 49, 52, 58, 96, 152, 227
BspANI GGCC 3 cut(s) 48, 497, 982
BspCNI CTCAG 2 cut(s) 346, 930
BspLI GGNNCC 1 cut(s) 904
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 1 cut(s) 576
BspTNI GGTCTC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 3 cut(s) 442, 666, 699
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 751
BssMI GATC 2 cut(s) 382, 568
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 753
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 2 cut(s) 788, 968
BstC8I GCNNGC 4 cut(s) 46, 134, 225, 1002
BstDEI CTNAG 4 cut(s) 333, 572, 593, 938
BstF5I GGATG 1 cut(s) 851
BstHHI GCGC 2 cut(s) 132, 340
BstKTI GATC 2 cut(s) 385, 571
BstMAI GTCTC 3 cut(s) 246, 307, 712
BstMBI GATC 2 cut(s) 382, 568
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 6 cut(s) 57, 335, 344, 484, 515, 668
BstNI CCWGG 1 cut(s) 753
BstNSI RCATGY 2 cut(s) 136, 697
BstSCI CCNGG 2 cut(s) 218, 751
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 7 cut(s) 28, 316, 465, 496, 502, 524, 695
BstX2I RGATCY 2 cut(s) 382, 568
BstYI RGATCY 2 cut(s) 382, 568
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 3 cut(s) 48, 497, 982
BtsCI GGATG 1 cut(s) 851
BtsIMutI CAGTG 2 cut(s) 673, 706
Cac8I GCNNGC 4 cut(s) 46, 134, 225, 1002
CaiI CAGNNNCTG 1 cut(s) 689
CfoI GCGC 2 cut(s) 132, 340
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 755, 806
CseI GACGC 2 cut(s) 64, 312
Csp6I GTAC 2 cut(s) 324, 648
CviAII CATG 4 cut(s) 8, 133, 694, 1005
CviQI GTAC 2 cut(s) 324, 648
DdeI CTNAG 4 cut(s) 333, 572, 593, 938
DpnI GATC 2 cut(s) 384, 570
DpnII GATC 2 cut(s) 382, 568
DraI TTTAAA 1 cut(s) 892
EaeI YGGCCR 1 cut(s) 46
EagI CGGCCG 1 cut(s) 46
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 942
EclXI CGGCCG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 944
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 755, 806
Eco52I CGGCCG 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 942
Eco57I CTGAAG 2 cut(s) 177, 861
Eco72I CACGTG 1 cut(s) 788
EcoICRI GAGCTC 1 cut(s) 942
EcoRII CCWGG 1 cut(s) 751
EcoT38I GRGCYC 1 cut(s) 944
FaeI CATG 4 cut(s) 11, 136, 697, 1008
FaiI YATR 9 cut(s) 9, 18, 134, 216, 393, 423, 695, 960, 1006
FalI AAGNNNNNCTT 4 cut(s) 369, 401, 868, 900
FatI CATG 4 cut(s) 7, 132, 693, 1004
FauI CCCGC 1 cut(s) 65
FblI GTMKAC 1 cut(s) 848
FokI GGATG 1 cut(s) 838
FriOI GRGCYC 1 cut(s) 944
FspBI CTAG 3 cut(s) 519, 732, 897
GlaI GCGC 2 cut(s) 131, 339
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 3 cut(s) 48, 497, 982
HapII CCGG 2 cut(s) 45, 220
HgaI GACGC 2 cut(s) 64, 312
HhaI GCGC 2 cut(s) 132, 340
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 4 cut(s) 11, 136, 697, 1008
Hin6I GCGC 2 cut(s) 130, 338
HinP1I GCGC 2 cut(s) 130, 338
HinfI GANTC 6 cut(s) 109, 115, 145, 192, 449, 801
HpaII CCGG 2 cut(s) 45, 220
HphI GGTGA 2 cut(s) 43, 455
Hpy166II GTNNAC 2 cut(s) 435, 849
Hpy188I TCNGA 5 cut(s) 114, 454, 717, 939, 952
Hpy188III TCNNGA 6 cut(s) 79, 106, 173, 196, 386, 798
Hpy8I GTNNAC 2 cut(s) 435, 849
Hpy99I CGWCG 3 cut(s) 80, 128, 560
HpyAV CCTTC 2 cut(s) 182, 819
HpyCH4IV ACGT 5 cut(s) 235, 322, 787, 835, 967
HpyCH4V TGCA 5 cut(s) 347, 361, 512, 623, 858
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 335, 344, 484, 515, 668
HpyF3I CTNAG 4 cut(s) 333, 572, 593, 938
HpySE526I ACGT 5 cut(s) 235, 322, 787, 835, 967
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 4 cut(s) 11, 136, 697, 1008
HspAI GCGC 2 cut(s) 130, 338
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 382, 568
LmnI GCTCC 4 cut(s) 59, 125, 141, 947
Lsp1109I GCAGC 7 cut(s) 28, 316, 465, 496, 502, 524, 695
LweI GCATC 4 cut(s) 334, 695, 732, 943
MaeI CTAG 3 cut(s) 519, 732, 897
MaeII ACGT 5 cut(s) 235, 322, 787, 835, 967
MaeIII GTNAC 1 cut(s) 443
MalI GATC 2 cut(s) 384, 570
MbiI CCGCTC 1 cut(s) 54
MboI GATC 2 cut(s) 382, 568
MboII GAAGA 8 cut(s) 94, 190, 291, 306, 392, 548, 580, 590
MflI RGATCY 2 cut(s) 382, 568
MhlI GDGCHC 2 cut(s) 793, 944
MluCI AATT 6 cut(s) 352, 371, 499, 504, 766, 859
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 969
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 3 cut(s) 492, 503, 891
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 2 cut(s) 45, 220
MspR9I CCNGG 2 cut(s) 220, 753
MvaI CCWGG 1 cut(s) 753
MwoI GCNNNNNNNGC 6 cut(s) 57, 335, 344, 484, 515, 668
NaeI GCCGGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 220
NdeII GATC 2 cut(s) 382, 568
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 4 cut(s) 11, 136, 697, 1008
NlaIV GGNNCC 1 cut(s) 904
NmuCI GTSAC 1 cut(s) 443
NspI RCATGY 2 cut(s) 136, 697
PaeI GCATGC 1 cut(s) 136
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 5 cut(s) 109, 115, 145, 449, 801
PleI GAGTC 1 cut(s) 186
PmaCI CACGTG 1 cut(s) 788
PmlI CACGTG 1 cut(s) 788
PpsI GAGTC 1 cut(s) 186
Ppu21I YACGTR 2 cut(s) 788, 968
Psp124BI GAGCTC 1 cut(s) 944
Psp6I CCWGG 1 cut(s) 751
PspCI CACGTG 1 cut(s) 788
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 1 cut(s) 904
PspPI GGNCC 2 cut(s) 755, 806
PstI CTGCAG 1 cut(s) 514
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 2 cut(s) 382, 568
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 325, 649
RsaNI GTAC 2 cut(s) 324, 648
SacI GAGCTC 1 cut(s) 944
SaqAI TTAA 3 cut(s) 492, 503, 891
Sau3AI GATC 2 cut(s) 382, 568
Sau96I GGNCC 2 cut(s) 755, 806
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 220, 753
SduI GDGCHC 2 cut(s) 793, 944
SfaNI GCATC 4 cut(s) 334, 695, 732, 943
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 2 cut(s) 755, 806
SmlI CTYRAG 5 cut(s) 104, 194, 604, 775, 907
SmoI CTYRAG 5 cut(s) 104, 194, 604, 775, 907
SphI GCATGC 1 cut(s) 136
Sse9I AATT 6 cut(s) 352, 371, 499, 504, 766, 859
SsiI CCGC 8 cut(s) 12, 25, 49, 52, 58, 96, 152, 227
SspI AATATT 1 cut(s) 243
SspMI CTAG 3 cut(s) 519, 732, 897
SstI GAGCTC 1 cut(s) 944
StyD4I CCNGG 2 cut(s) 218, 751
TaiI ACGT 5 cut(s) 238, 325, 790, 838, 970
TaqI TCGA 3 cut(s) 78, 126, 797
TaqII GACCGA 3 cut(s) 270, 428, 794
TasI AATT 6 cut(s) 352, 371, 499, 504, 766, 859
TatI WGTACW 1 cut(s) 647
TauI GCSGC 3 cut(s) 15, 51, 54
TfiI GAWTC 5 cut(s) 109, 115, 145, 449, 801
Tru1I TTAA 3 cut(s) 492, 503, 891
Tru9I TTAA 3 cut(s) 492, 503, 891
TscAI CASTG 2 cut(s) 673, 706
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 8 cut(s) 41, 329, 478, 509, 512, 515, 683, 997
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 5 cut(s) 203, 627, 801, 816, 852
TspGWI ACGGA 2 cut(s) 112, 128
TspRI CASTG 2 cut(s) 673, 706
VpaK11BI GGWCC 2 cut(s) 755, 806
XapI RAATTY 1 cut(s) 352
XceI RCATGY 2 cut(s) 136, 697
XmiI GTMKAC 1 cut(s) 848
XspI CTAG 3 cut(s) 519, 732, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.