Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008484

Physical Location & Seq

Genomic Coordinates Forward (+)

20912561 .. 20913961

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0209200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCTCAAACCCAAAATGGACTTCTCCGGCCCAAAACCAAACGGCCCACAACTTAAAGACAAGCTCCTCGTCATCATGGGCGCCACCGGCGCCGGCAAGTCGCGGCTCTCCCTCGACCTCGCCGCCCGCTTCCCTCCGGCCACCTTCGAAGTCATCAACGCCGACAAAATGCAGGTCTACAAGGGGCTCGACATCACCACCAACAAGCTCTCCGCTCCCGAACGGCGAGTCGTTCCGCACTATCTTCTCGGCGAGTTCGACTCCCGCGACGGCGACGTCACCCCAGCCGAGTTTCGCCGACTCGCGGCTCAGGCGGTGTCTAGCGTCGTCTCCCGGAGGAAAGTACCTGTGCTTGTCGGCGGGTCCAACTCGTTCATCCACGCGCTCGTAGTCGACCGGTTCGAACCGGACTGTGATGTATTTAACTGCGAGTCTGTAACGGTAGCGGTCTCGTCGGAGCTCAGGTACGACTGCTGCTTTCTCTGGGTCGACGTGTCGCTGCCGGTGTTGACGGCGTACTTGTCGCAGCGAGTAGAGGAAATGCTCGACTCGGGGATGTTCCACGAGCTGGCCGAGTTCTACGGGGAAAACTCGGCGGGTCGAACCGGTCTGAGAAAGGCGATCGGAGTGGCGGAGTTCAGCCGGTACTTTAAGGAGTACTCGCCGCCACCGGCGGCGGAGGATGAAGATCCGGTGCGGCGGGGAGCATATGATGAGGCGGTGGGAGAGATTAAAAAGAACACGTGTCGGCTGGCGAAGAGGCAGATGGGAAAGATTGCGAGGTTGAGGAAGGCGGGGTGGGATCTACGGAGGCTGGACGCGACGGAGGCGTTTAGGGCGGCGGTGACGTCAGATGACGAGGAAGAGGGGAAGAGGTGGTCGGAGATTTGGGAGAGAGAGGTGGTTGAGCCAAGCGTGAAGATTGTGAGGCATTTCTTGGTGGAGGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Efg1

Protein Analysis

317

Amino Acids

35.54

Weight (kDa)

5.81

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPT	PF01745	22 - 135	1.8e-07	Isopentenyl transferase
IPPT	PF01715	58 - 134	2.3e-16	IPP transferase
IPPT	PF01715	153 - 256	1.4e-13	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04230 AT1G04230 AT5G43720
fragaria_vesca	FvH4_3g24470 FvH4_3g24470
malus_domestica	MD13G1204100.v1.1 MD16G1206200.v1.1
prunus_persica	Prupe.1G027200_v2.0.a1 Prupe.1G027200_v2.0.a1
pyrus_communis	pycom13g17740 pycom16g17340
rosa_chinensis	RchiOBHm_Chr5g0043971
rosa_laevigata	RLG00000034229
rosa_multiflora	Rmu_sc0002988.1_g000010 Rmu_sc0006669.1_g000008
rosa_roxburghii	Rroxscaffold_1G00037090
rosa_rugosa	Rorug05G0209200 Rorug05G0209300
rosa_samantha	Rh5AG293900 Rh5BG301900 Rh5CG329300 Rh5DG310900
rosa_wichuraiana	Rw5G027230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AatII	GACGTC	2 cut(s)	279, 851
Acc36I	ACCTGC	1 cut(s)	163
AccB1I	GGYRCC	2 cut(s)	80, 89
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccBSI	CCGCTC	1 cut(s)	215
AccI	GTMKAC	3 cut(s)	177, 393, 489
AccII	CGCG	5 cut(s)	103, 267, 305, 383, 821
AclWI	GGATC	2 cut(s)	683, 810
AcoI	YGGCCR	2 cut(s)	138, 570
AcvI	CACGTG	1 cut(s)	744
AcyI	GRCGYC	4 cut(s)	81, 90, 276, 848
AfaI	GTAC	5 cut(s)	345, 467, 518, 647, 659
AfiI	CCNNNNNNNGG	2 cut(s)	304, 568
AflIII	ACRYGT	3 cut(s)	492, 741, 743
AgeI	ACCGGT	2 cut(s)	396, 605
AjiI	CACGTC	1 cut(s)	493
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	4 cut(s)	64, 208, 460, 568
AluI	AGCT	4 cut(s)	64, 208, 460, 568
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	2 cut(s)	334, 454
AlwI	GGATC	2 cut(s)	683, 810
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	4 cut(s)	28, 43, 138, 570
ApeKI	GCWGC	3 cut(s)	474, 499, 526
ArsI	GACNNNNNNTTYG	4 cut(s)	159, 191, 213, 245
AsiGI	ACCGGT	2 cut(s)	396, 605
AspLEI	GCGC	3 cut(s)	83, 92, 385
AspS9I	GGNCC	3 cut(s)	29, 44, 363
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	187, 271, 856
AsuII	TTCGAA	2 cut(s)	147, 402
AvaI	CYCGRG	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	363
BanI	GGYRCC	2 cut(s)	80, 89
BanII	GRGCYC	2 cut(s)	189, 462
BauI	CACGAG	1 cut(s)	563
BbrPI	CACGTG	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	461, 486, 538
BccI	CCATC	1 cut(s)	760
BceAI	ACGGC	4 cut(s)	58, 239, 286, 528
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	334, 454
BfaI	CTAG	1 cut(s)	321
BfoI	RGCGCY	2 cut(s)	84, 93
BfuAI	ACCTGC	1 cut(s)	163
BmcAI	AGTACT	1 cut(s)	659
Bme1390I	CCNGG	1 cut(s)	334
Bme18I	GGWCC	1 cut(s)	363
BmeT110I	CYCGRG	1 cut(s)	550
BmgBI	CACGTC	1 cut(s)	493
BmgT120I	GGNCC	3 cut(s)	29, 44, 363
BmiI	GGNNCC	3 cut(s)	82, 91, 364
BmrFI	CCNGG	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
Bpu10I	CCTNAGC	2 cut(s)	309, 461
Bpu14I	TTCGAA	2 cut(s)	147, 402
BpuMI	CCSGG	1 cut(s)	334
BsaAI	YACGTR	1 cut(s)	744
BsaBI	GATNNNNATC	1 cut(s)	687
BsaHI	GRCGYC	4 cut(s)	81, 90, 276, 848
BsaI	GGTCTC	1 cut(s)	454
BsaWI	WCCGGW	4 cut(s)	396, 406, 605, 691
BsaXI	ACNNNNNCTCC	5 cut(s)	194, 224, 449, 479, 935
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 568
Bse118I	RCCGGY	7 cut(s)	86, 92, 396, 502, 605, 642, 670
Bse8I	GATNNNNATC	1 cut(s)	687
BseGI	GGATG	3 cut(s)	375, 561, 688
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	2 cut(s)	304, 568
BseMII	CTCAG	3 cut(s)	323, 475, 602
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	461, 486, 538
BseYI	CCCAGC	1 cut(s)	283
Bsh1236I	CGCG	5 cut(s)	103, 267, 305, 383, 821
Bsh1285I	CGRYCG	2 cut(s)	397, 624
BshFI	GGCC	4 cut(s)	30, 45, 140, 572
BshNI	GGYRCC	2 cut(s)	80, 89
BshTI	ACCGGT	2 cut(s)	396, 605
BsiEI	CGRYCG	2 cut(s)	397, 624
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	550
BslI	CCNNNNNNNGG	2 cut(s)	304, 568
BsmAI	GTCTC	2 cut(s)	334, 454
BsmBI	CGTCTC	1 cut(s)	334
BsnI	GGCC	4 cut(s)	30, 45, 140, 572
Bso31I	GGTCTC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	550
Bsp119I	TTCGAA	2 cut(s)	147, 402
Bsp1286I	GDGCHC	2 cut(s)	189, 462
Bsp143I	GATC	3 cut(s)	621, 688, 802
BspANI	GGCC	4 cut(s)	30, 45, 140, 572
BspCNI	CTCAG	3 cut(s)	322, 474, 603
BspFNI	CGCG	5 cut(s)	103, 267, 305, 383, 821
BspLI	GGNNCC	3 cut(s)	82, 91, 364
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	683, 810
BspT104I	TTCGAA	2 cut(s)	147, 402
BspT107I	GGYRCC	2 cut(s)	80, 89
BspTNI	GGTCTC	1 cut(s)	454
BsrBI	CCGCTC	1 cut(s)	215
BsrFI	RCCGGY	7 cut(s)	86, 92, 396, 502, 605, 642, 670
BssAI	RCCGGY	7 cut(s)	86, 92, 396, 502, 605, 642, 670
BssMI	GATC	3 cut(s)	621, 688, 802
BssNI	GRCGYC	4 cut(s)	81, 90, 276, 848
BssSI	CACGAG	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	413, 442
Bst6I	CTCTTC	3 cut(s)	752, 858, 866
BstACI	GRCGYC	4 cut(s)	81, 90, 276, 848
BstBAI	YACGTR	1 cut(s)	744
BstBI	TTCGAA	2 cut(s)	147, 402
BstC8I	GCNNGC	4 cut(s)	94, 127, 570, 753
BstDEI	CTNAG	3 cut(s)	309, 461, 611
BstF5I	GGATG	3 cut(s)	375, 561, 688
BstFNI	CGCG	5 cut(s)	103, 267, 305, 383, 821
BstH2I	RGCGCY	2 cut(s)	84, 93
BstHHI	GCGC	3 cut(s)	83, 92, 385
BstKTI	GATC	3 cut(s)	624, 691, 805
BstMAI	GTCTC	2 cut(s)	334, 454
BstMBI	GATC	3 cut(s)	621, 688, 802
BstMCI	CGRYCG	2 cut(s)	397, 624
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 89, 311, 827, 836
BstSCI	CCNGG	1 cut(s)	332
BstUI	CGCG	5 cut(s)	103, 267, 305, 383, 821
BstV1I	GCAGC	3 cut(s)	461, 486, 538
BstX2I	RGATCY	2 cut(s)	688, 802
BstYI	RGATCY	2 cut(s)	688, 802
BsuRI	GGCC	4 cut(s)	30, 45, 140, 572
BtrI	CACGTC	1 cut(s)	493
BtsCI	GGATG	3 cut(s)	375, 561, 688
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	4 cut(s)	94, 127, 570, 753
CfoI	GCGC	3 cut(s)	83, 92, 385
Cfr10I	RCCGGY	7 cut(s)	86, 92, 396, 502, 605, 642, 670
Cfr13I	GGNCC	3 cut(s)	29, 44, 363
CseI	GACGC	2 cut(s)	313, 827
Csp6I	GTAC	5 cut(s)	344, 466, 517, 646, 658
CspAI	ACCGGT	2 cut(s)	396, 605
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	5 cut(s)	344, 466, 517, 646, 658
DdeI	CTNAG	3 cut(s)	309, 461, 611
DinI	GGCGCC	2 cut(s)	82, 91
DpnI	GATC	3 cut(s)	623, 690, 804
DpnII	GATC	3 cut(s)	621, 688, 802
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	2 cut(s)	138, 570
Eam1104I	CTCTTC	3 cut(s)	752, 858, 866
EarI	CTCTTC	3 cut(s)	752, 858, 866
EciI	GGCGGA	2 cut(s)	647, 692
Ecl136II	GAGCTC	1 cut(s)	460
Eco24I	GRGCYC	2 cut(s)	189, 462
Eco31I	GGTCTC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	460
Eco72I	CACGTG	1 cut(s)	744
Eco88I	CYCGRG	1 cut(s)	550
EcoICRI	GAGCTC	1 cut(s)	460
EcoT38I	GRGCYC	2 cut(s)	189, 462
EgeI	GGCGCC	2 cut(s)	82, 91
EheI	GGCGCC	2 cut(s)	82, 91
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	1 cut(s)	79
FaiI	YATR	3 cut(s)	77, 709, 711
FatI	CATG	1 cut(s)	75
FauI	CCCGC	6 cut(s)	134, 272, 353, 589, 693, 787
FauNDI	CATATG	1 cut(s)	709
FblI	GTMKAC	3 cut(s)	177, 393, 489
FokI	GGATG	3 cut(s)	362, 568, 695
FriOI	GRGCYC	2 cut(s)	189, 462
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	3 cut(s)	82, 91, 384
GsaI	CCCAGC	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	84, 93
HaeIII	GGCC	4 cut(s)	30, 45, 140, 572
HgaI	GACGC	2 cut(s)	313, 827
HhaI	GCGC	3 cut(s)	83, 92, 385
Hin1I	GRCGYC	4 cut(s)	81, 90, 276, 848
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	3 cut(s)	81, 90, 383
HinP1I	GCGC	3 cut(s)	81, 90, 383
HincII	GTYRAC	3 cut(s)	394, 490, 510
HindII	GTYRAC	3 cut(s)	394, 490, 510
HinfI	GANTC	5 cut(s)	228, 260, 300, 431, 548
HphI	GGTGA	3 cut(s)	187, 271, 856
Hpy166II	GTNNAC	4 cut(s)	178, 394, 490, 510
Hpy188I	TCNGA	5 cut(s)	457, 612, 626, 853, 883
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	4 cut(s)	178, 394, 490, 510
Hpy99I	CGWCG	6 cut(s)	272, 278, 329, 457, 494, 826
HpyAV	CCTTC	2 cut(s)	154, 784
HpyCH4III	ACNGT	2 cut(s)	413, 442
HpyCH4IV	ACGT	4 cut(s)	276, 492, 743, 848
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 89, 311, 827, 836
HpyF3I	CTNAG	3 cut(s)	309, 461, 611
HpySE526I	ACGT	4 cut(s)	276, 492, 743, 848
Hsp92I	GRCGYC	4 cut(s)	81, 90, 276, 848
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	3 cut(s)	81, 90, 383
KasI	GGCGCC	2 cut(s)	80, 89
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	621, 688, 802
LmnI	GCTCC	4 cut(s)	69, 220, 457, 704
Lsp1109I	GCAGC	3 cut(s)	461, 486, 538
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	4 cut(s)	276, 492, 743, 848
MaeIII	GTNAC	3 cut(s)	277, 436, 844
MalI	GATC	3 cut(s)	623, 690, 804
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	3 cut(s)	621, 688, 802
MboII	GAAGA	6 cut(s)	236, 698, 769, 875, 883, 931
MflI	RGATCY	2 cut(s)	688, 802
MhlI	GDGCHC	2 cut(s)	189, 462
Mly113I	GGCGCC	2 cut(s)	81, 90
MlyI	GAGTC	5 cut(s)	237, 254, 294, 440, 542
MmeI	TCCRAC	3 cut(s)	390, 435, 861
MroNI	GCCGGC	1 cut(s)	92
MseI	TTAA	4 cut(s)	54, 423, 651, 732
MspR9I	CCNGG	1 cut(s)	334
MvnI	CGCG	5 cut(s)	103, 267, 305, 383, 821
MwoI	GCNNNNNNNGC	5 cut(s)	87, 89, 311, 827, 836
NaeI	GCCGGC	1 cut(s)	94
NarI	GGCGCC	2 cut(s)	81, 90
NciI	CCSGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	3 cut(s)	621, 688, 802
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	3 cut(s)	82, 91, 364
NmeAIII	GCCGAG	4 cut(s)	228, 313, 572, 598
NmuCI	GTSAC	2 cut(s)	277, 844
NspV	TTCGAA	2 cut(s)	147, 402
PcsI	WCGNNNNNNNCGW	4 cut(s)	255, 264, 399, 570
PdiI	GCCGGC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	568
PfoI	TCCNGGA	1 cut(s)	332
PinAI	ACCGGT	2 cut(s)	396, 605
Ple19I	CGATCG	1 cut(s)	624
PleI	GAGTC	5 cut(s)	236, 254, 294, 439, 542
PluTI	GGCGCC	2 cut(s)	84, 93
PmaCI	CACGTG	1 cut(s)	744
PmlI	CACGTG	1 cut(s)	744
PpsI	GAGTC	5 cut(s)	236, 254, 294, 439, 542
Ppu21I	YACGTR	1 cut(s)	744
Psp124BI	GAGCTC	1 cut(s)	462
PspCI	CACGTG	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	82, 91, 364
PspPI	GGNCC	3 cut(s)	29, 44, 363
PsuI	RGATCY	2 cut(s)	688, 802
PvuI	CGATCG	1 cut(s)	624
RsaI	GTAC	5 cut(s)	345, 467, 518, 647, 659
RsaNI	GTAC	5 cut(s)	344, 466, 517, 646, 658
SacI	GAGCTC	1 cut(s)	462
SalI	GTCGAC	2 cut(s)	392, 488
SaqAI	TTAA	4 cut(s)	54, 423, 651, 732
Sau3AI	GATC	3 cut(s)	621, 688, 802
Sau96I	GGNCC	3 cut(s)	29, 44, 363
ScaI	AGTACT	1 cut(s)	659
SchI	GAGTC	5 cut(s)	237, 254, 294, 440, 542
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	2 cut(s)	189, 462
SfoI	GGCGCC	2 cut(s)	82, 91
SfuI	TTCGAA	2 cut(s)	147, 402
SgrAI	CRCCGGYG	2 cut(s)	86, 670
SinI	GGWCC	1 cut(s)	363
SspDI	GGCGCC	2 cut(s)	80, 89
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	2 cut(s)	413, 442
TaiI	ACGT	4 cut(s)	279, 495, 746, 851
TaqI	TCGA	9 cut(s)	114, 147, 189, 258, 393, 402, 489, 546, 601
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	7 cut(s)	106, 125, 308, 667, 677, 700, 842
Tru1I	TTAA	4 cut(s)	54, 423, 651, 732
Tru9I	TTAA	4 cut(s)	54, 423, 651, 732
TseFI	GTSAC	2 cut(s)	277, 844
TseI	GCWGC	3 cut(s)	474, 499, 526
Tsp45I	GTSAC	2 cut(s)	277, 844
TspDTI	ATGAA	2 cut(s)	364, 699
TspGWI	ACGGA	2 cut(s)	823, 839
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	363
XmiI	GTMKAC	3 cut(s)	177, 393, 489
XspI	CTAG	1 cut(s)	321
ZraI	GACGTC	2 cut(s)	277, 849
ZrmI	AGTACT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.