AT5G44150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011113
Physical Location & Seq
Reverse (-)
17763631 .. 17765428
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44150.1

Sequence Viewer

Length: 1068 bp
ATGGACTCAAAATCTCTAGCTAAATCGAAGAGAGCTCATACTCTACACCACAGCAAGAAATCGCATTCTGTTCATAAACCGAAAGTTCCTGGAGTCTCAGAGAAGAATCCGGAGAAGCTACAAGGAAACCAAACCAAGAGTCCGGTTCAATCTCGACGAGTCTCTGCACTTCCGTCGAATTGGGATCGGTATGATGATGAACTTGATGCAGCTGAGGATTCATCGATAAGCCTACATTCTGATGTTATTGTGCCAAAAAGCAAAGGAGCAGATTATCTGCATTTGATATCTGAAGCTCAAGCTGAGTCTAATTCAAAGATTGAGAACAATTTAGATTGTTTATCGTCGTTAGACGATCTTTTGCACGATGAGTTTAGTCGCGTAGTTGGATCTATGATCTCGGCTAGAGGGGAAGGTATACTTTCATGGATGGAAGATGATAACTTCGTTGTGGAAGAAGATGGATCAGGTTCATATCAAGAGCCTGGATTCCTCTCCTTAAATTTGAATGTTTTGGCAAAGACGCTAGAGAATGTGGACTTGCATGAGCGACTCTACATTGATCCTGATCTTTTGCCGCTGCCCGAGCTGAATACATCCCAAACAAAAGTTAGCCGCAATGAAGAACCGAGTCATTCACACATAGCTCAAAACGACCCTATTGTCGTACCAGGAGAATCATCAGTCAGGGAAGCTGAGTCGCTGGATCAAGTTAAGGACATACTAATACTCACAGACGAGTCAGAGAAATCTTCAGCAATTGAAGCTGATCTAGATTTGCTCCTTAACTCCTTTAGTGAAGCACATACACAGCCAAACCCAGTGGCCAGTGCCTCAGGTAAATCTTCAGCTTTTGAAACGGAACTTGATTCTCTTCTCAAATCTCATAGTAGCACAGAACAATTCAACAAACCAGGGAACCCATCTGATCAAAAGATTCACATGACGGGTTTTAATGATGTGCTTGATGATTTGCTCGAAAGTACTCCAGTATCGATCATACCACAGTCGAACCAGACCTCATCCAAAGTTTTAGATGATTTTGATTCTTGGTTAGACACGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.04

Weight (kDa)

4.66

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 662
AccI GTMKAC 1 cut(s) 418
AccII CGCG 1 cut(s) 381
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 2 cut(s) 578, 616
AclWI GGATC 5 cut(s) 192, 397, 472, 557, 714
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 3 cut(s) 312, 738, 831
AfaI GTAC 2 cut(s) 669, 985
AgsI TTSAA 6 cut(s) 149, 315, 508, 764, 857, 907
AjnI CCWGG 4 cut(s) 88, 484, 670, 913
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 2 cut(s) 100, 166
AlwI GGATC 5 cut(s) 192, 397, 472, 557, 714
Ama87I CYCGRG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 1 cut(s) 825
ApeKI GCWGC 2 cut(s) 209, 580
ApoI RAATTY 1 cut(s) 502
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AvaI CYCGRG 1 cut(s) 584
AxyI CCTNAGG 1 cut(s) 835
BaeI ACNNNNGTAYC 2 cut(s) 975, 1008
BalI TGGCCA 1 cut(s) 827
BanII GRGCYC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 221, 567
BccI CCATC 3 cut(s) 424, 455, 931
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciT130I CCWGG 4 cut(s) 90, 486, 672, 915
BclI TGATCA 1 cut(s) 928
BcoDI GTCTC 2 cut(s) 100, 166
BfaI CTAG 4 cut(s) 17, 405, 527, 773
BisI GCNGC 4 cut(s) 210, 578, 581, 616
BlsI GCNGC 4 cut(s) 211, 579, 582, 617
BmcAI AGTACT 1 cut(s) 985
Bme1390I CCNGG 4 cut(s) 90, 486, 672, 915
BmeT110I CYCGRG 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 920
BmrFI CCNGG 4 cut(s) 90, 486, 672, 915
BmrI ACTGGG 1 cut(s) 815
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 815
BpmI CTGGAG 2 cut(s) 111, 972
Bpu10I CCTNAGC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 282
Bsa29I ATCGAT 2 cut(s) 224, 995
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 914
BsaWI WCCGGW 2 cut(s) 109, 142
Bse1I ACTGG 3 cut(s) 821, 828, 989
Bse21I CCTNAGG 1 cut(s) 835
Bse3DI GCAATG 1 cut(s) 625
Bse8I GATNNNNATC 1 cut(s) 567
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 4 cut(s) 90, 486, 672, 915
BseCI ATCGAT 2 cut(s) 224, 995
BseDI CCNNGG 1 cut(s) 914
BseGI GGATG 3 cut(s) 435, 596, 1022
BseJI GATNNNNATC 1 cut(s) 567
BseMI GCAATG 1 cut(s) 625
BseMII CTCAG 5 cut(s) 111, 204, 294, 687, 849
BseNI ACTGG 3 cut(s) 821, 828, 989
BseXI GCAGC 2 cut(s) 221, 567
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 1 cut(s) 827
BshVI ATCGAT 2 cut(s) 224, 995
BsiHKAI GWGCWC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 2 cut(s) 110, 143
BsmAI GTCTC 2 cut(s) 100, 166
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 827
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 109
BspACI CCGC 2 cut(s) 578, 616
BspANI GGCC 1 cut(s) 827
BspCNI CTCAG 5 cut(s) 110, 205, 295, 688, 848
BspDI ATCGAT 2 cut(s) 224, 995
BspEI TCCGGA 1 cut(s) 109
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 920
BspPI GGATC 5 cut(s) 192, 397, 472, 557, 714
BsrDI GCAATG 1 cut(s) 625
BsrI ACTGG 3 cut(s) 821, 828, 989
BssECI CCNNGG 1 cut(s) 914
BssNAI GTATAC 1 cut(s) 419
Bst1107I GTATAC 1 cut(s) 419
Bst2UI CCWGG 4 cut(s) 90, 486, 672, 915
Bst4CI ACNGT 1 cut(s) 1008
Bst6I CTCTTC 2 cut(s) 23, 879
BstDEI CTNAG 5 cut(s) 97, 213, 303, 696, 835
BstF5I GGATG 3 cut(s) 435, 596, 1022
BstFNI CGCG 1 cut(s) 381
BstMAI GTCTC 2 cut(s) 100, 166
BstMWI GCNNNNNNNGC 2 cut(s) 586, 764
BstNI CCWGG 4 cut(s) 90, 486, 672, 915
BstSCI CCNGG 4 cut(s) 88, 484, 670, 913
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 221, 567
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BstZ17I GTATAC 1 cut(s) 419
Bsu15I ATCGAT 2 cut(s) 224, 995
Bsu36I CCTNAGG 1 cut(s) 835
BsuRI GGCC 1 cut(s) 827
BsuTUI ATCGAT 2 cut(s) 224, 995
BtsCI GGATG 3 cut(s) 435, 596, 1022
BtsIMutI CAGTG 2 cut(s) 828, 835
ClaI ATCGAT 2 cut(s) 224, 995
CseI GACGC 1 cut(s) 532
Csp6I GTAC 2 cut(s) 668, 984
CspCI CAANNNNNGTGG 2 cut(s) 804, 839
CviAII CATG 3 cut(s) 426, 545, 943
CviQI GTAC 2 cut(s) 668, 984
DdeI CTNAG 5 cut(s) 97, 213, 303, 696, 835
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 1 cut(s) 825
Eam1104I CTCTTC 2 cut(s) 23, 879
EarI CTCTTC 2 cut(s) 23, 879
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 37
Eco32I GATATC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 35
Eco57I CTGAAG 3 cut(s) 312, 738, 831
Eco81I CCTNAGG 1 cut(s) 835
Eco88I CYCGRG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 35
EcoRII CCWGG 4 cut(s) 88, 484, 670, 913
EcoRV GATATC 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 37
FaeI CATG 3 cut(s) 429, 548, 946
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 3 cut(s) 425, 544, 942
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 4 cut(s) 210, 578, 581, 616
FokI GGATG 3 cut(s) 442, 583, 1009
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 4 cut(s) 210, 578, 581, 616
FspBI CTAG 4 cut(s) 17, 405, 527, 773
GluI GCNGC 4 cut(s) 210, 578, 581, 616
GsuI CTGGAG 2 cut(s) 111, 972
HaeIII GGCC 1 cut(s) 827
HapII CCGG 2 cut(s) 110, 143
HgaI GACGC 1 cut(s) 532
Hin1II CATG 3 cut(s) 429, 548, 946
HpaII CCGG 2 cut(s) 110, 143
Hpy166II GTNNAC 2 cut(s) 419, 538
Hpy188I TCNGA 5 cut(s) 100, 241, 292, 745, 928
Hpy188III TCNNGA 5 cut(s) 110, 153, 479, 566, 773
Hpy8I GTNNAC 2 cut(s) 419, 538
Hpy99I CGWCG 3 cut(s) 159, 178, 349
HpyAV CCTTC 1 cut(s) 407
HpyCH4III ACNGT 1 cut(s) 1008
HpyCH4V TGCA 5 cut(s) 167, 209, 280, 364, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 586, 764
HpyF3I CTNAG 5 cut(s) 97, 213, 303, 696, 835
Hsp92II CATG 3 cut(s) 429, 548, 946
Kpn2I TCCGGA 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 928
LmnI GCTCC 2 cut(s) 266, 786
Lsp1109I GCAGC 2 cut(s) 221, 567
LweI GCATC 1 cut(s) 196
MaeI CTAG 4 cut(s) 17, 405, 527, 773
MboII GAAGA 9 cut(s) 40, 115, 446, 467, 470, 635, 744, 837, 866
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 6 cut(s) 178, 310, 328, 502, 759, 902
MluNI TGGCCA 1 cut(s) 827
MlyI GAGTC 8 cut(s) 102, 148, 168, 314, 546, 640, 707, 749
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 5 cut(s) 208, 401, 503, 844, 1030
Mox20I TGGCCA 1 cut(s) 827
MroI TCCGGA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 827
MseI TTAA 4 cut(s) 500, 714, 786, 954
MslI CAYNNNNRTG 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 827
MspA1I CMGCKG 2 cut(s) 212, 580
MspI CCGG 2 cut(s) 110, 143
MspR9I CCNGG 4 cut(s) 90, 486, 672, 915
MunI CAATTG 1 cut(s) 759
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 4 cut(s) 90, 486, 672, 915
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 586, 764
NlaIII CATG 3 cut(s) 429, 548, 946
NlaIV GGNNCC 1 cut(s) 920
NmeAIII GCCGAG 1 cut(s) 380
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 7 cut(s) 106, 218, 489, 677, 869, 937, 1046
PfoI TCCNGGA 1 cut(s) 88
PkrI GCNGC 4 cut(s) 211, 579, 582, 617
PleI GAGTC 8 cut(s) 101, 147, 167, 313, 546, 639, 706, 748
PpsI GAGTC 8 cut(s) 101, 147, 167, 313, 546, 639, 706, 748
Psp124BI GAGCTC 1 cut(s) 37
Psp6I CCWGG 4 cut(s) 88, 484, 670, 913
PspGI CCWGG 4 cut(s) 88, 484, 670, 913
PspN4I GGNNCC 1 cut(s) 920
PsuI RGATCY 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 669, 985
RsaNI GTAC 2 cut(s) 668, 984
RseI CAYNNNNRTG 1 cut(s) 240
SacI GAGCTC 1 cut(s) 37
SaqAI TTAA 4 cut(s) 500, 714, 786, 954
SatI GCNGC 4 cut(s) 210, 578, 581, 616
ScaI AGTACT 1 cut(s) 985
SchI GAGTC 8 cut(s) 102, 148, 168, 314, 546, 640, 707, 749
ScrFI CCNGG 4 cut(s) 90, 486, 672, 915
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 6 cut(s) 178, 310, 328, 502, 759, 902
SsiI CCGC 2 cut(s) 578, 616
SspMI CTAG 4 cut(s) 17, 405, 527, 773
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 4 cut(s) 88, 484, 670, 913
TaaI ACNGT 1 cut(s) 1008
TaqI TCGA 7 cut(s) 26, 154, 176, 224, 978, 995, 1010
TasI AATT 6 cut(s) 178, 310, 328, 502, 759, 902
TatI WGTACW 1 cut(s) 983
TauI GCSGC 2 cut(s) 580, 618
TfiI GAWTC 7 cut(s) 106, 218, 489, 677, 869, 937, 1046
Tru1I TTAA 4 cut(s) 500, 714, 786, 954
Tru9I TTAA 4 cut(s) 500, 714, 786, 954
TscAI CASTG 2 cut(s) 828, 835
TseI GCWGC 2 cut(s) 209, 580
TspDTI ATGAA 6 cut(s) 62, 210, 213, 414, 462, 636
TspGWI ACGGA 2 cut(s) 162, 875
TspRI CASTG 2 cut(s) 828, 835
XapI RAATTY 1 cut(s) 502
XbaI TCTAGA 1 cut(s) 772
XmiI GTMKAC 1 cut(s) 418
XspI CTAG 4 cut(s) 17, 405, 527, 773
ZrmI AGTACT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.