Prupe.2G094200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011113
Physical Location & Seq
Forward (+)
14871791 .. 14876121
4331 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G094200.1

Sequence Viewer

Length: 1260 bp
ATGGACGTCAAGGCTTTAGCGAAATCAAATAGGGCTCACGCTCAGCGCCATAGTAAAAAGCATCATCCAAATCAGAAAGCAAAAGCTCCGGCGGTAGATGGCGGGAAGGCAAGCGACGCCGGACCTGCAAAGAAGCCATTGGGCAAGCAAGTTAAGGAGAAAACAAATCCTACACATGGTGCCTCTGCACTCCCCACGAATTGGGATCGTTACGAGGAAGAATTCGAAGCAGGTTCCGAAGAGCCAGCAAGTGATGGGCTGAATAGAGCCCCTGATGTTGCTGTGCCAATGAGTAAAGGTGCAGACTATCGTCATCTGATTGCCGAGGCTCAGGCTCAGTCTGAGCTAACCATTTATTCAGACCCATTTCCTTCCTTGGATAATGTTCTACCTGGGGACTGGAATGAGGGGATAGGATCTATGCTTTCAGTCAGGGGTGAGAGTATTCTATCGAGGATTGGAGATGATAATTTTGTTGTGGAGGATAAGACTGCTGCACATCATGAGGTGTCATTTCTCTCCTTGAATTTGCATGCTCTTGCAGAACAACTGGAAAAGATAGCCTTACCCGAAAGGCTTTTCGTCGAAGCAGAACTATTGCCACCAGAGCTGCATGTGGAGGGACAAGAGGCGACCTGCAGTCAGTCCTCTGACCCGATGCAAGCAACATGTAATGAGGAAGCAACCCGAGGAATGCCTGAAGAATCAATTTCAGAGAAGGTCCAGGTTGCTGATCATGATATTGAGATTACAATGTCTGGTTCAACCGGAAGTGGCCATCCAGACCTAATCTTGCCTAACCTAGGATCAGTTTCCGCGATTCAGGGTAATATCGATCCAAGTAAACTTGGCAAATCTGATTATCAAAGCAAATTATCAGAGTCCGAAACACAATTCAGTGTGAAATCATTTGAGGCATCAACTGCAGAGGCAGAACTGGATATGCTTCTTGACTCATTTGGTGAGACCAAGATAAATGATTCATCTGGCTTCAGTTCTGTTAAAACTGTTTCAGTACAAGAAGCGGCTTTCATGGCTCCACTTCAACTTCCGAGAAAAGCCCCAGATTCATCGGTACTCATGACTGCTAACTTTGATGATGAGCTTGACGACTTGATAAATGAAACATCCATACAGATCAGACAAAGTGGTCCATCTCATGCCCAGAAAGAAAGGGCTGTCCATGAATTTCGATCATCCCATTCCGGAACAAAGTCCGAAGAACAGGATGATTTTGATAATTGGTTGGATACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

45.42

Weight (kDa)

4.74

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1149
AatII GACGTC 1 cut(s) 9
Acc36I ACCTGC 3 cut(s) 133, 221, 644
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 201
AccII CGCG 1 cut(s) 818
AccIII TCCGGA 1 cut(s) 1205
AciI CCGC 4 cut(s) 92, 102, 816, 1025
AclWI GGATC 4 cut(s) 213, 424, 814, 830
AcoI YGGCCR 1 cut(s) 775
AcsI RAATTY 3 cut(s) 221, 526, 1187
AcuI CTGAAG 2 cut(s) 720, 976
AcyI GRCGYC 2 cut(s) 6, 117
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 2 cut(s) 1017, 1077
AfiI CCNNNNNNNGG 3 cut(s) 176, 201, 803
AflIII ACRYGT 1 cut(s) 668
AgsI TTSAA 3 cut(s) 526, 765, 1046
AhdI GACNNNNNGTC 1 cut(s) 639
AjnI CCWGG 2 cut(s) 391, 723
AluBI AGCT 4 cut(s) 86, 346, 610, 1105
AluI AGCT 4 cut(s) 86, 346, 610, 1105
Alw26I GTCTC 1 cut(s) 959
AlwI GGATC 4 cut(s) 213, 424, 814, 830
Ama87I CYCGRG 1 cut(s) 687
Aor13HI TCCGGA 1 cut(s) 1205
AoxI GGCC 1 cut(s) 775
ApeKI GCWGC 2 cut(s) 494, 610
ApoI RAATTY 3 cut(s) 221, 526, 1187
AspA2I CCTAGG 1 cut(s) 802
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 3 cut(s) 122, 721, 1151
AsuHPI GGTGA 2 cut(s) 449, 974
AsuII TTCGAA 1 cut(s) 225
AvaI CYCGRG 1 cut(s) 687
AvaII GGWCC 3 cut(s) 122, 721, 1151
AvrII CCTAGG 1 cut(s) 802
BalI TGGCCA 1 cut(s) 777
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 2 cut(s) 37, 271
BbvI GCAGC 2 cut(s) 481, 597
BccI CCATC 4 cut(s) 92, 248, 786, 1162
BciT130I CCWGG 2 cut(s) 393, 725
BciVI GTATCC 1 cut(s) 1243
BclI TGATCA 1 cut(s) 733
BcoDI GTCTC 1 cut(s) 959
BfaI CTAG 1 cut(s) 803
BfmI CTRYAG 2 cut(s) 637, 924
BfoI RGCGCY 1 cut(s) 49
BfuAI ACCTGC 3 cut(s) 133, 221, 644
BfuI GTATCC 1 cut(s) 1243
BisI GCNGC 3 cut(s) 495, 611, 1026
BlnI CCTAGG 1 cut(s) 802
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 3 cut(s) 496, 612, 1027
Bme1390I CCNGG 2 cut(s) 393, 725
Bme18I GGWCC 3 cut(s) 122, 721, 1151
BmeRI GACNNNNNGTC 1 cut(s) 639
BmeT110I CYCGRG 1 cut(s) 687
BmgT120I GGNCC 3 cut(s) 122, 721, 1151
BmiI GGNNCC 3 cut(s) 181, 235, 1038
BmrFI CCNGG 2 cut(s) 393, 725
BmsI GCATC 3 cut(s) 70, 648, 926
BoxI GACNNNNGTC 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 330
Bpu1102I GCTNAGC 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 834
BsaHI GRCGYC 2 cut(s) 6, 117
BsaI GGTCTC 1 cut(s) 959
BsaJI CCNNGG 5 cut(s) 324, 375, 392, 688, 802
BsaWI WCCGGW 2 cut(s) 767, 1205
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 201, 803
Bse1I ACTGG 3 cut(s) 404, 555, 942
BseAI TCCGGA 1 cut(s) 1205
BseBI CCWGG 2 cut(s) 393, 725
BseCI ATCGAT 1 cut(s) 834
BseDI CCNNGG 5 cut(s) 324, 375, 392, 688, 802
BseGI GGATG 5 cut(s) 64, 778, 1127, 1196, 1234
BseLI CCNNNNNNNGG 3 cut(s) 176, 201, 803
BseMII CTCAG 4 cut(s) 56, 333, 344, 350
BseNI ACTGG 3 cut(s) 404, 555, 942
BseXI GCAGC 2 cut(s) 481, 597
BsgI GTGCAG 3 cut(s) 171, 321, 480
Bsh1236I CGCG 1 cut(s) 818
BshFI GGCC 1 cut(s) 777
BshNI GGYRCC 1 cut(s) 179
BshVI ATCGAT 1 cut(s) 834
BsiHKCI CYCGRG 1 cut(s) 687
BsiSI CCGG 4 cut(s) 89, 120, 768, 1206
BslFI GGGAC 2 cut(s) 410, 636
BslI CCNNNNNNNGG 3 cut(s) 176, 201, 803
BsmAI GTCTC 1 cut(s) 959
BsmFI GGGAC 2 cut(s) 410, 636
BsmI GAATGC 1 cut(s) 699
BsnI GGCC 1 cut(s) 777
Bso31I GGTCTC 1 cut(s) 959
BsoBI CYCGRG 1 cut(s) 687
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 37, 271
Bsp13I TCCGGA 1 cut(s) 1205
Bsp143I GATC 7 cut(s) 205, 416, 733, 806, 835, 1137, 1193
Bsp1720I GCTNAGC 1 cut(s) 42
BspACI CCGC 4 cut(s) 92, 102, 816, 1025
BspANI GGCC 1 cut(s) 777
BspCNI CTCAG 4 cut(s) 55, 334, 343, 349
BspDI ATCGAT 1 cut(s) 834
BspEI TCCGGA 1 cut(s) 1205
BspFNI CGCG 1 cut(s) 818
BspHI TCATGA 3 cut(s) 502, 736, 1080
BspLI GGNNCC 3 cut(s) 181, 235, 1038
BspMAI CTGCAG 2 cut(s) 641, 928
BspMI ACCTGC 3 cut(s) 133, 221, 644
BspPI GGATC 4 cut(s) 213, 424, 814, 830
BspQI GCTCTTC 1 cut(s) 234
BspT104I TTCGAA 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 959
BsrI ACTGG 3 cut(s) 404, 555, 942
BssECI CCNNGG 5 cut(s) 324, 375, 392, 688, 802
BssMI GATC 7 cut(s) 205, 416, 733, 806, 835, 1137, 1193
BssNI GRCGYC 2 cut(s) 6, 117
BssT1I CCWWGG 2 cut(s) 375, 802
Bst2UI CCWGG 2 cut(s) 393, 725
Bst4CI ACNGT 1 cut(s) 1009
Bst6I CTCTTC 1 cut(s) 234
BstACI GRCGYC 2 cut(s) 6, 117
BstAPI GCANNNNNTGC 1 cut(s) 923
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 5 cut(s) 112, 146, 246, 534, 663
BstDEI CTNAG 4 cut(s) 42, 330, 336, 342
BstENI CCTNNNNNAGG 1 cut(s) 801
BstF5I GGATG 5 cut(s) 64, 778, 1127, 1196, 1234
BstFNI CGCG 1 cut(s) 818
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 7 cut(s) 208, 419, 736, 809, 838, 1140, 1196
BstMAI GTCTC 1 cut(s) 959
BstMBI GATC 7 cut(s) 205, 416, 733, 806, 835, 1137, 1193
BstMWI GCNNNNNNNGC 5 cut(s) 116, 125, 607, 923, 1034
BstNI CCWGG 2 cut(s) 393, 725
BstNSI RCATGY 3 cut(s) 536, 617, 672
BstPAI GACNNNNGTC 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 391, 723
BstSFI CTRYAG 2 cut(s) 637, 924
BstUI CGCG 1 cut(s) 818
BstV1I GCAGC 2 cut(s) 481, 597
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
Bsu15I ATCGAT 1 cut(s) 834
BsuI GTATCC 1 cut(s) 1243
BsuRI GGCC 1 cut(s) 777
BsuTUI ATCGAT 1 cut(s) 834
BtsCI GGATG 5 cut(s) 64, 778, 1127, 1196, 1234
BtsIMutI CAGTG 1 cut(s) 904
BveI ACCTGC 3 cut(s) 133, 221, 644
Cac8I GCNNGC 5 cut(s) 112, 146, 246, 534, 663
CciI TCATGA 3 cut(s) 502, 736, 1080
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 3 cut(s) 122, 721, 1151
ClaI ATCGAT 1 cut(s) 834
CseI GACGC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 1016, 1076
CviQI GTAC 2 cut(s) 1016, 1076
DdeI CTNAG 4 cut(s) 42, 330, 336, 342
DpnI GATC 7 cut(s) 207, 418, 735, 808, 837, 1139, 1195
DpnII GATC 7 cut(s) 205, 416, 733, 806, 835, 1137, 1193
DraIII CACNNNGTG 1 cut(s) 179
DrdI GACNNNNNNGTC 1 cut(s) 1149
DriI GACNNNNNGTC 1 cut(s) 639
DseDI GACNNNNNNGTC 1 cut(s) 1149
EaeI YGGCCR 1 cut(s) 775
Eam1104I CTCTTC 1 cut(s) 234
Eam1105I GACNNNNNGTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 375, 802
Eco24I GRGCYC 2 cut(s) 37, 271
Eco31I GGTCTC 1 cut(s) 959
Eco47I GGWCC 3 cut(s) 122, 721, 1151
Eco57I CTGAAG 2 cut(s) 720, 976
Eco88I CYCGRG 1 cut(s) 687
EcoNI CCTNNNNNAGG 1 cut(s) 801
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 391, 723
EcoT14I CCWWGG 2 cut(s) 375, 802
EcoT38I GRGCYC 2 cut(s) 37, 271
ErhI CCWWGG 2 cut(s) 375, 802
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 2 cut(s) 410, 636
FauI CCCGC 1 cut(s) 95
FbaI TGATCA 1 cut(s) 733
Fnu4HI GCNGC 3 cut(s) 495, 611, 1026
FokI GGATG 5 cut(s) 51, 765, 1114, 1183, 1241
FriOI GRGCYC 2 cut(s) 37, 271
Fsp4HI GCNGC 3 cut(s) 495, 611, 1026
FspBI CTAG 1 cut(s) 803
GlaI GCGC 1 cut(s) 47
GluI GCNGC 3 cut(s) 495, 611, 1026
HaeII RGCGCY 1 cut(s) 49
HaeIII GGCC 1 cut(s) 777
HapII CCGG 4 cut(s) 89, 120, 768, 1206
HgaI GACGC 1 cut(s) 125
HhaI GCGC 1 cut(s) 48
Hin1I GRCGYC 2 cut(s) 6, 117
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 6 cut(s) 704, 820, 881, 953, 980, 1067
HpaII CCGG 4 cut(s) 89, 120, 768, 1206
HphI GGTGA 2 cut(s) 449, 974
Hpy166II GTNNAC 1 cut(s) 845
Hpy188III TCNNGA 6 cut(s) 503, 737, 782, 950, 1081, 1206
Hpy8I GTNNAC 1 cut(s) 845
Hpy99I CGWCG 2 cut(s) 119, 587
HpyAV CCTTC 3 cut(s) 100, 381, 712
HpyCH4III ACNGT 1 cut(s) 1009
HpyCH4IV ACGT 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 125, 607, 923, 1034
HpyF3I CTNAG 4 cut(s) 42, 330, 336, 342
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 2 cut(s) 6, 117
HspAI GCGC 1 cut(s) 46
Kpn2I TCCGGA 1 cut(s) 1205
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 7 cut(s) 205, 416, 733, 806, 835, 1137, 1193
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 2 cut(s) 91, 1042
Lsp1109I GCAGC 2 cut(s) 481, 597
LweI GCATC 3 cut(s) 70, 648, 926
MaeI CTAG 1 cut(s) 803
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 209
MalI GATC 7 cut(s) 207, 418, 735, 808, 837, 1139, 1195
MboI GATC 7 cut(s) 205, 416, 733, 806, 835, 1137, 1193
MboII GAAGA 4 cut(s) 230, 251, 713, 1232
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 2 cut(s) 37, 271
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 9 cut(s) 199, 221, 469, 526, 708, 872, 893, 1187, 1240
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 2 cut(s) 890, 947
MmeI TCCRAC 1 cut(s) 1227
Mox20I TGGCCA 1 cut(s) 777
MroI TCCGGA 1 cut(s) 1205
MscI TGGCCA 1 cut(s) 777
MseI TTAA 2 cut(s) 153, 1002
Msp20I TGGCCA 1 cut(s) 777
MspI CCGG 4 cut(s) 89, 120, 768, 1206
MspR9I CCNGG 2 cut(s) 393, 725
Mva1269I GAATGC 1 cut(s) 699
MvaI CCWGG 2 cut(s) 393, 725
MvnI CGCG 1 cut(s) 818
MwoI GCNNNNNNNGC 5 cut(s) 116, 125, 607, 923, 1034
NdeII GATC 7 cut(s) 205, 416, 733, 806, 835, 1137, 1193
NlaIV GGNNCC 3 cut(s) 181, 235, 1038
NmeAIII GCCGAG 1 cut(s) 349
NspI RCATGY 3 cut(s) 536, 617, 672
NspV TTCGAA 1 cut(s) 225
PaeI GCATGC 1 cut(s) 536
PagI TCATGA 3 cut(s) 502, 736, 1080
PciI ACATGT 1 cut(s) 668
PciSI GCTCTTC 1 cut(s) 234
PctI GAATGC 1 cut(s) 699
PfeI GAWTC 4 cut(s) 704, 820, 980, 1067
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 3 cut(s) 496, 612, 1027
PleI GAGTC 2 cut(s) 889, 947
PpsI GAGTC 2 cut(s) 889, 947
PscI ACATGT 1 cut(s) 668
PshAI GACNNNNGTC 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 391, 723
PspGI CCWGG 2 cut(s) 391, 723
PspN4I GGNNCC 3 cut(s) 181, 235, 1038
PspPI GGNCC 3 cut(s) 122, 721, 1151
PstI CTGCAG 2 cut(s) 641, 928
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 2 cut(s) 1017, 1077
RsaNI GTAC 2 cut(s) 1016, 1076
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 153, 1002
SatI GCNGC 3 cut(s) 495, 611, 1026
Sau3AI GATC 7 cut(s) 205, 416, 733, 806, 835, 1137, 1193
Sau96I GGNCC 3 cut(s) 122, 721, 1151
SchI GAGTC 2 cut(s) 890, 947
ScrFI CCNGG 2 cut(s) 393, 725
SduI GDGCHC 2 cut(s) 37, 271
SfaNI GCATC 3 cut(s) 70, 648, 926
SfcI CTRYAG 2 cut(s) 637, 924
SfuI TTCGAA 1 cut(s) 225
SinI GGWCC 3 cut(s) 122, 721, 1151
SphI GCATGC 1 cut(s) 536
Sse9I AATT 9 cut(s) 199, 221, 469, 526, 708, 872, 893, 1187, 1240
SsiI CCGC 4 cut(s) 92, 102, 816, 1025
SspMI CTAG 1 cut(s) 803
StyD4I CCNGG 2 cut(s) 391, 723
StyI CCWWGG 2 cut(s) 375, 802
TaaI ACNGT 1 cut(s) 1009
TaiI ACGT 1 cut(s) 9
TaqI TCGA 5 cut(s) 225, 452, 585, 834, 1192
TasI AATT 9 cut(s) 199, 221, 469, 526, 708, 872, 893, 1187, 1240
TatI WGTACW 1 cut(s) 1015
TauI GCSGC 1 cut(s) 1028
TfiI GAWTC 4 cut(s) 704, 820, 980, 1067
Tru1I TTAA 2 cut(s) 153, 1002
Tru9I TTAA 2 cut(s) 153, 1002
TscAI CASTG 1 cut(s) 904
TseI GCWGC 2 cut(s) 494, 610
TspDTI ATGAA 5 cut(s) 972, 1021, 1059, 1137, 1200
TspRI CASTG 1 cut(s) 904
Van91I CCANNNNNTGG 1 cut(s) 201
VpaK11BI GGWCC 3 cut(s) 122, 721, 1151
XagI CCTNNNNNAGG 1 cut(s) 801
XapI RAATTY 3 cut(s) 221, 526, 1187
XceI RCATGY 3 cut(s) 536, 617, 672
XmaJI CCTAGG 1 cut(s) 802
XspI CTAG 1 cut(s) 803
ZraI GACGTC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.