Rh7CG393200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011113
Physical Location & Seq
Reverse (-)
49895300 .. 49898527
3228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG393200.1

Sequence Viewer

Length: 474 bp
ATGTCCCGAACCTTCACATTGGTGTCTGCAACCTCTACTGCTTCCACCTCCTTCAACGTAGTTTTCTTCGCGAGAGATAACGCTGCTAAGGAGGAAGCAACATTAGCTAACAAAGGAGCCAGAGTAATATCTGAAGAATCAACCTGTGGTGAGTTTCCCGACAAGAGCGACGTAGCAGATCATGATATTGAGATTATGATATCGAATTCTCCTGACAGTGATTGTCTAGACCTAAATTTGTCTAACATGGGATCAATTTCACTCAACCAAGTTGATGTTGATCTGAGTAAACTTGAAAAATCCACCAATCAAAGGAAACCACCAGAGTCGAGTGCGAAACCTTTGGCAGGCGTTCCAAACAAGAATGTTGCCACATTTAAGGCAGCAACTGCAGACGAAGAACTGGATATGCTTCTTGACTCATTTAGTGAGACCAAGATAAATGATTCATCTGGTTTCAGCTCCAAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

16.84

Weight (kDa)

4.49

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 2 cut(s) 205, 235
AcuI CTGAAG 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 312, 347
AgsI TTSAA 2 cut(s) 55, 296
AleI CACNNNNGTG 1 cut(s) 20
AluBI AGCT 2 cut(s) 107, 462
AluI AGCT 2 cut(s) 107, 462
Alw26I GTCTC 1 cut(s) 425
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 1 cut(s) 389
ApeKI GCWGC 2 cut(s) 83, 383
ApoI RAATTY 2 cut(s) 205, 235
AsuHPI GGTGA 1 cut(s) 161
BbvI GCAGC 2 cut(s) 70, 395
BcoDI GTCTC 1 cut(s) 425
BfaI CTAG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 2 cut(s) 84, 384
BlsI GCNGC 2 cut(s) 85, 385
BmiI GGNNCC 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 347
Bse1I ACTGG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 279
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 312, 347
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 408
BseXI GCAGC 2 cut(s) 70, 395
Bsh1236I CGCG 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 312, 347
BsmAI GTCTC 1 cut(s) 425
Bso31I GGTCTC 1 cut(s) 425
Bsp143I GATC 3 cut(s) 178, 251, 280
Bsp68I TCGCGA 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 276
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 425
BsrI ACTGG 1 cut(s) 408
BssMI GATC 3 cut(s) 178, 251, 280
Bst4CI ACNGT 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 87, 284
BstENI CCTNNNNNAGG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 3 cut(s) 181, 254, 283
BstMAI GTCTC 1 cut(s) 425
BstMBI GATC 3 cut(s) 178, 251, 280
BstMWI GCNNNNNNNGC 2 cut(s) 104, 389
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 70, 395
BtsIMutI CAGTG 1 cut(s) 223
BtuMI TCGCGA 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 349
CaiI CAGNNNCTG 1 cut(s) 389
CciI TCATGA 1 cut(s) 181
CviAII CATG 2 cut(s) 182, 247
CviJI RGCY 3 cut(s) 107, 119, 462
CviKI_1 RGCY 3 cut(s) 107, 119, 462
DdeI CTNAG 2 cut(s) 87, 284
DpnI GATC 3 cut(s) 180, 253, 282
DpnII GATC 3 cut(s) 178, 251, 280
Eco31I GGTCTC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 153
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoRI GAATTC 1 cut(s) 205
EcoRV GATATC 1 cut(s) 201
FaeI CATG 2 cut(s) 185, 250
FaiI YATR 4 cut(s) 183, 197, 248, 410
FatI CATG 2 cut(s) 181, 246
Fnu4HI GCNGC 2 cut(s) 84, 384
Fsp4HI GCNGC 2 cut(s) 84, 384
FspBI CTAG 1 cut(s) 227
GluI GCNGC 2 cut(s) 84, 384
Hin1II CATG 2 cut(s) 185, 250
HinfI GANTC 4 cut(s) 137, 326, 419, 446
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 133, 285
Hpy188III TCNNGA 7 cut(s) 6, 70, 158, 182, 212, 227, 416
Hpy8I GTNNAC 1 cut(s) 290
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 22, 61
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 2 cut(s) 57, 171
HpyCH4V TGCA 2 cut(s) 29, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 389
HpyF3I CTNAG 2 cut(s) 87, 284
HpySE526I ACGT 2 cut(s) 57, 171
Hsp92II CATG 2 cut(s) 185, 250
Kzo9I GATC 3 cut(s) 178, 251, 280
LmnI GCTCC 2 cut(s) 116, 467
LpnPI CCDG 7 cut(s) 133, 157, 225, 333, 336, 389, 438
Lsp1109I GCAGC 2 cut(s) 70, 395
MaeI CTAG 1 cut(s) 227
MaeII ACGT 2 cut(s) 57, 171
MalI GATC 3 cut(s) 180, 253, 282
MboI GATC 3 cut(s) 178, 251, 280
MboII GAAGA 3 cut(s) 58, 146, 410
MluCI AATT 3 cut(s) 205, 235, 255
MlyI GAGTC 2 cut(s) 335, 413
MnlI CCTC 3 cut(s) 43, 58, 85
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 20
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 104, 389
NdeII GATC 3 cut(s) 178, 251, 280
NlaIII CATG 2 cut(s) 185, 250
NlaIV GGNNCC 1 cut(s) 118
NruI TCGCGA 1 cut(s) 71
OliI CACNNNNGTG 1 cut(s) 20
PagI TCATGA 1 cut(s) 181
PfeI GAWTC 2 cut(s) 137, 446
PkrI GCNGC 2 cut(s) 85, 385
PleI GAGTC 2 cut(s) 334, 413
PpsI GAGTC 2 cut(s) 334, 413
PspN4I GGNNCC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 389
RruI TCGCGA 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 2 cut(s) 84, 384
Sau3AI GATC 3 cut(s) 178, 251, 280
SchI GAGTC 2 cut(s) 335, 413
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 3 cut(s) 205, 235, 255
SspMI CTAG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 2 cut(s) 60, 174
TaqI TCGA 2 cut(s) 203, 329
TasI AATT 3 cut(s) 205, 235, 255
TfiI GAWTC 2 cut(s) 137, 446
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 223
TseI GCWGC 2 cut(s) 83, 383
TspDTI ATGAA 1 cut(s) 438
TspRI CASTG 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 2 cut(s) 205, 235
XbaI TCTAGA 1 cut(s) 226
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.