Rw7G031570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011113
Physical Location & Seq
Forward (+)
45351986 .. 45355290
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031570.1

Sequence Viewer

Length: 1125 bp
ATGGATTCCAAGGCTTTAGCAAAATCCAAGAGGGCACACTCTCAACACCACTCTAAAAAGTACCACTCGAATCAGAAAGCAAAGCCCCAAGCAGGTGGAGCCAAGGGGAAGCAAATCCCCACAAACTGGGATCGTTACGAGGAAGAATTCGATTTGGGTTCTGAAGGTGGTGCCTCCGACATTGTTTTGCCCAAGAGTAAAGGTGCAGATTATAGTCATCTCATTGCTGAGGCACAGTCTCAGTCTCAATTTGACGATGTTCTGTCTGGGGAGTGGAATAAGGGGATTGGGTCTATGCTTTCGGCCAGGGGAGACAGCATTCTATCATGGATTGGAGATGATAATTTTGTTGTATCATTTCTGTCCTTGAATTTGCATTCCCTTGCAGAACAACTGGACAAAGTAGACTTATCACAGAGGCTTTACATTGAGGCAGACCTATTGCCTCCAGAACTGAATGTGGAGGGTTTAGAATCAACTAGCAGTCAGTCTGCTGATCAGGTGGAAGCAACATTAGTTAACAAAGGAGCCAGAGTAATATCCGAAGAATCAACCTGTGGTGAGTTTCCCGACAAGAGCGACGTAGCAGATCAAGATATTGAGATTATGATATCGAATTCTCCTGACAGTGATTGTCTAGACCCAAATTTGTCTAACATGGGATCAATTTCACTCAACCAAGTTGATGTTGATCTGACTAAACTTGAAAAATCCACCAATCAAAGGAAACCACCAGAGTCGAGTGTGAAACCTTTGGCAGGCGTTCCAAACAAGAATGTTGCCACATTTAAGGCAGCAACTGCAGAGGAAGAACTGGATATGCTTCTCGACTCATTTAGTGAGACCAAGATAAATGATTCATCTGGTTTCAGGTTTGTACAGGAAGAAGCTTCTGTGCCTCCACTTCAACTTCCTAGAAAAGGTACAGATTCATCAAAGCTGATGGCTGCCAACCTTGATGATGCGCTTGATGACTTGATAAGTGAAATATCCATTCCAATCAACCAAAGTGGTCTGTCTCACCCCCAAGAAAAAATGGCCGTGCATGATTTTGAATCTTCCTCTCGTACTATATCAAAGTCCAAAGAACTGGATGATTTTGATTCATGGTTGGATACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

40.77

Weight (kDa)

4.58

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 126
AccI GTMKAC 1 cut(s) 405
AclWI GGATC 2 cut(s) 138, 670
AcoI YGGCCR 2 cut(s) 303, 1038
AcsI RAATTY 4 cut(s) 146, 370, 616, 646
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 4 cut(s) 62, 879, 925, 1069
AfiI CCNNNNNNNGG 5 cut(s) 92, 126, 723, 758, 920
AgsI TTSAA 4 cut(s) 370, 707, 908, 1055
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 2 cut(s) 890, 940
AluI AGCT 2 cut(s) 890, 940
Alw26I GTCTC 5 cut(s) 243, 249, 306, 836, 1023
AlwI GGATC 2 cut(s) 138, 670
AlwNI CAGNNNCTG 1 cut(s) 800
AoxI GGCC 2 cut(s) 303, 1038
ApeKI GCWGC 2 cut(s) 794, 947
ApoI RAATTY 4 cut(s) 146, 370, 616, 646
AspLEI GCGC 1 cut(s) 967
AsuHPI GGTGA 2 cut(s) 572, 1013
BaeGI GKGCMC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 806, 934
BccI CCATC 1 cut(s) 937
BceAI ACGGC 1 cut(s) 1025
BciT130I CCWGG 1 cut(s) 307
BciVI GTATCC 1 cut(s) 1108
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 5 cut(s) 243, 249, 306, 836, 1023
BfaI CTAG 3 cut(s) 480, 638, 915
BfmI CTRYAG 1 cut(s) 801
BfuAI ACCTGC 1 cut(s) 83
BfuI GTATCC 1 cut(s) 1108
BisI GCNGC 2 cut(s) 795, 948
BlsI GCNGC 2 cut(s) 796, 949
Bme1390I CCNGG 1 cut(s) 307
BmiI GGNNCC 3 cut(s) 100, 172, 529
BmrFI CCNGG 1 cut(s) 307
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 952
BmuI ACTGGG 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 432
Bpu10I CCTNAGC 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 3 cut(s) 9, 102, 306
BsaXI ACNNNNNCTCC 2 cut(s) 519, 549
Bsc4I CCNNNNNNNGG 5 cut(s) 92, 126, 723, 758, 920
Bse1I ACTGG 4 cut(s) 131, 399, 819, 1095
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 3 cut(s) 9, 102, 306
BseGI GGATG 1 cut(s) 1099
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 5 cut(s) 92, 126, 723, 758, 920
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 219, 254
BseNI ACTGG 4 cut(s) 131, 399, 819, 1095
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 806, 934
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 2 cut(s) 305, 1040
BshNI GGYRCC 1 cut(s) 170
BslI CCNNNNNNNGG 5 cut(s) 92, 126, 723, 758, 920
BsmAI GTCTC 5 cut(s) 243, 249, 306, 836, 1023
BsmI GAATGC 2 cut(s) 318, 376
BsnI GGCC 2 cut(s) 305, 1040
Bso31I GGTCTC 1 cut(s) 836
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 877
Bsp143I GATC 5 cut(s) 130, 496, 589, 662, 691
BspANI GGCC 2 cut(s) 305, 1040
BspCNI CTCAG 2 cut(s) 220, 253
BspLI GGNNCC 3 cut(s) 100, 172, 529
BspMAI CTGCAG 1 cut(s) 805
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 2 cut(s) 138, 670
BspT107I GGYRCC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 836
BsrDI GCAATG 1 cut(s) 222
BsrGI TGTACA 1 cut(s) 877
BsrI ACTGG 4 cut(s) 131, 399, 819, 1095
BssECI CCNNGG 3 cut(s) 9, 102, 306
BssMI GATC 5 cut(s) 130, 496, 589, 662, 691
BssT1I CCWWGG 2 cut(s) 9, 102
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 3 cut(s) 237, 629, 1120
BstAPI GCANNNNNTGC 1 cut(s) 800
BstAUI TGTACA 1 cut(s) 877
BstC8I GCNNGC 1 cut(s) 760
BstDEI CTNAG 2 cut(s) 228, 240
BstENI CCTNNNNNAGG 2 cut(s) 756, 918
BstF5I GGATG 1 cut(s) 1099
BstHHI GCGC 1 cut(s) 967
BstKTI GATC 5 cut(s) 133, 499, 592, 665, 694
BstMAI GTCTC 5 cut(s) 243, 249, 306, 836, 1023
BstMBI GATC 5 cut(s) 130, 496, 589, 662, 691
BstMWI GCNNNNNNNGC 2 cut(s) 98, 800
BstNI CCWGG 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 801
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 806, 934
BstXI CCANNNNNNTGG 2 cut(s) 95, 1090
BsuI GTATCC 1 cut(s) 1108
BsuRI GGCC 2 cut(s) 305, 1040
BtsCI GGATG 1 cut(s) 1099
BtsIMutI CAGTG 1 cut(s) 634
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 760
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 1 cut(s) 967
Csp6I GTAC 4 cut(s) 61, 878, 924, 1068
CspCI CAANNNNNGTGG 2 cut(s) 991, 1026
CviAII CATG 4 cut(s) 327, 658, 1046, 1107
CviQI GTAC 4 cut(s) 61, 878, 924, 1068
DdeI CTNAG 2 cut(s) 228, 240
DpnI GATC 5 cut(s) 132, 498, 591, 664, 693
DpnII GATC 5 cut(s) 130, 496, 589, 662, 691
EaeI YGGCCR 2 cut(s) 303, 1038
Eco130I CCWWGG 2 cut(s) 9, 102
Eco31I GGTCTC 1 cut(s) 836
Eco32I GATATC 1 cut(s) 612
Eco57I CTGAAG 1 cut(s) 183
EcoNI CCTNNNNNAGG 2 cut(s) 756, 918
EcoRI GAATTC 2 cut(s) 146, 616
EcoRII CCWGG 1 cut(s) 305
EcoRV GATATC 1 cut(s) 612
EcoT14I CCWWGG 2 cut(s) 9, 102
ErhI CCWWGG 2 cut(s) 9, 102
FaeI CATG 4 cut(s) 330, 661, 1049, 1110
FaiI YATR 9 cut(s) 213, 296, 328, 608, 659, 821, 1047, 1073, 1108
FatI CATG 4 cut(s) 326, 657, 1045, 1106
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 2 cut(s) 795, 948
FokI GGATG 1 cut(s) 1106
Fsp4HI GCNGC 2 cut(s) 795, 948
FspBI CTAG 3 cut(s) 480, 638, 915
GlaI GCGC 1 cut(s) 966
GluI GCNGC 2 cut(s) 795, 948
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 2 cut(s) 305, 1040
HhaI GCGC 1 cut(s) 967
Hin1II CATG 4 cut(s) 330, 661, 1049, 1110
Hin6I GCGC 1 cut(s) 965
HinP1I GCGC 1 cut(s) 965
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 888
HpaI GTTAAC 1 cut(s) 520
HphI GGTGA 2 cut(s) 572, 1013
Hpy166II GTNNAC 2 cut(s) 406, 520
Hpy188I TCNGA 5 cut(s) 75, 163, 178, 544, 696
Hpy188III TCNNGA 6 cut(s) 449, 569, 593, 623, 638, 827
Hpy8I GTNNAC 2 cut(s) 406, 520
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 3 cut(s) 237, 629, 1120
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 5 cut(s) 206, 376, 386, 803, 1045
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 800
HpyF3I CTNAG 2 cut(s) 228, 240
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 4 cut(s) 330, 661, 1049, 1110
HspAI GCGC 1 cut(s) 965
Ksp22I TGATCA 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 5 cut(s) 130, 496, 589, 662, 691
LmnI GCTCC 2 cut(s) 98, 527
Lsp1109I GCAGC 2 cut(s) 806, 934
LweI GCATC 1 cut(s) 952
MaeI CTAG 3 cut(s) 480, 638, 915
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 134
MalI GATC 5 cut(s) 132, 498, 591, 664, 693
MboI GATC 5 cut(s) 130, 496, 589, 662, 691
MboII GAAGA 5 cut(s) 155, 557, 821, 896, 1050
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 7 cut(s) 146, 248, 343, 370, 616, 646, 666
MlyI GAGTC 2 cut(s) 746, 824
MmeI TCCRAC 2 cut(s) 201, 1092
MseI TTAA 2 cut(s) 519, 789
MspR9I CCNGG 1 cut(s) 307
Mva1269I GAATGC 2 cut(s) 318, 376
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 98, 800
NdeII GATC 5 cut(s) 130, 496, 589, 662, 691
NlaIII CATG 4 cut(s) 330, 661, 1049, 1110
NlaIV GGNNCC 3 cut(s) 100, 172, 529
PaqCI CACCTGC 1 cut(s) 83
PctI GAATGC 2 cut(s) 318, 376
PfeI GAWTC 8 cut(s) 5, 70, 473, 548, 857, 929, 1055, 1103
PflMI CCANNNNNTGG 1 cut(s) 126
PkrI GCNGC 2 cut(s) 796, 949
PleI GAGTC 2 cut(s) 745, 824
PpsI GAGTC 2 cut(s) 745, 824
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 3 cut(s) 100, 172, 529
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 1 cut(s) 800
RsaI GTAC 4 cut(s) 62, 879, 925, 1069
RsaNI GTAC 4 cut(s) 61, 878, 924, 1068
SaqAI TTAA 2 cut(s) 519, 789
SatI GCNGC 2 cut(s) 795, 948
Sau3AI GATC 5 cut(s) 130, 496, 589, 662, 691
SchI GAGTC 2 cut(s) 746, 824
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 1 cut(s) 952
SfcI CTRYAG 1 cut(s) 801
Sse9I AATT 7 cut(s) 146, 248, 343, 370, 616, 646, 666
SspMI CTAG 3 cut(s) 480, 638, 915
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 2 cut(s) 9, 102
TaaI ACNGT 3 cut(s) 237, 629, 1120
TaiI ACGT 1 cut(s) 585
TaqI TCGA 5 cut(s) 68, 150, 614, 740, 828
TasI AATT 7 cut(s) 146, 248, 343, 370, 616, 646, 666
TatI WGTACW 1 cut(s) 877
TfiI GAWTC 8 cut(s) 5, 70, 473, 548, 857, 929, 1055, 1103
Tru1I TTAA 2 cut(s) 519, 789
Tru9I TTAA 2 cut(s) 519, 789
TscAI CASTG 1 cut(s) 634
TseI GCWGC 2 cut(s) 794, 947
TspDTI ATGAA 3 cut(s) 849, 921, 1095
TspRI CASTG 1 cut(s) 634
Van91I CCANNNNNTGG 1 cut(s) 126
XagI CCTNNNNNAGG 2 cut(s) 756, 918
XapI RAATTY 4 cut(s) 146, 370, 616, 646
XbaI TCTAGA 1 cut(s) 637
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 3 cut(s) 480, 638, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.