FvH4_5g30510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011113
Physical Location & Seq
Forward (+)
21380799 .. 21384046
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30510.t2

Sequence Viewer

Length: 1146 bp
ATGGATTCCAAGGCTCTAGCAAAATCAAAGAGGGCTCACTCTCAACACCACTCCAAAAAGTACCACTCCCCAAATCAGAAAGCAAAGGATGGAGCCAAGCCAAACAAAGCCTCGGGAAAGCAAATCCCCACAAATTGGGATCGTTACGATGAAGAACTCGATTCGGGTTCTCAAGATGCTGCCTCCGACATTGTTTTGCCCAAGAGCAAAGGCGCAGACTATACTCATCTGATTGCCGAGGCACAGTCCCAGTCCCTGTCTCAGTTCGACGACGATGTTCTGTCTGTGGAGTGGAATAAGGGGATTATGTCTATGCTTTCAGCACGGGGGGAGAGCATTCTGTCGTGGATTGGGGATGATAATTTTGTTGTGGATGATAAGACAGCAGCTGCACATCATGAGGTATCCTTTCTATCGTTGAATTTGCATTCCCTTGCAGAACAACTGGAGAAAGTAGACTTATCAGAGAGGCTTTTCATTGAGGCTGACTTATTGCCTCCAGAACTGAATCTGGAGGGTCTAGAGTCAACTAGCAGCCAATCTGCTGATCAGGCGCAAGGAACATTCGTTAACAAAGGAGCAAGAGTAATACCTGAAGCATCAATCAGTGGTGAGTTTCCCGACAAGATCAACGTTGCAGATCAAGATATTGAGATTATGTTATCAAGTTCTCCTGACAGTGATTGTCTCGATTCAAACCTGGGATCAATTTCACTCAAGCAAATCGATGTTGATCCGAGTAAACTTGGAAAATCCACCAGACAATCGAGTATGAAACCTTTTGCAGACATTCCGATCAAGAATCTTGCCACATTTGAGGCAGCAACTGCAGAGGAAGAATTGGATATGCTTCTCGACTCATTTAGTGAGACCAAGAGAAATGATCCATCTGCTTTGAGGTCTTTACAGGATGAAGCCTCTGTGCCTCCACTTCAAGTTCCTAGAAAAGGTACAGATTCATCAATCCTGGTGGCTGCCAACCTTGATGATGCGCTTGATGACTTGATGAATGAAATATCTATTCCGATTAACCAAGGTGGTCCATCTCGCCCCCAAGAAAAAATGGCTGTTCATGATTTTCAATCTTCCCAAACTGGATCAAAGTCCAAAGTGGATGATTTTGATTCTTGGTTCGATACACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

382

Amino Acids

41.54

Weight (kDa)

4.59

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 135
AccI GTMKAC 1 cut(s) 456
AclI AACGTT 1 cut(s) 633
AclWI GGATC 5 cut(s) 147, 712, 728, 878, 1105
AcsI RAATTY 1 cut(s) 421
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 2 cut(s) 62, 952
AfiI CCNNNNNNNGG 2 cut(s) 135, 947
AgsI TTSAA 4 cut(s) 421, 696, 935, 1082
AjnI CCWGG 2 cut(s) 699, 966
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
Alw26I GTCTC 3 cut(s) 264, 692, 863
AlwI GGATC 5 cut(s) 147, 712, 728, 878, 1105
AlwNI CAGNNNCTG 3 cut(s) 256, 389, 827
Ama87I CYCGRG 1 cut(s) 112
ApeKI GCWGC 6 cut(s) 179, 386, 389, 534, 821, 974
ApoI RAATTY 1 cut(s) 421
AspLEI GCGC 3 cut(s) 215, 556, 994
AspS9I GGNCC 1 cut(s) 1040
AsuHPI GGTGA 1 cut(s) 623
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 1040
BanII GRGCYC 1 cut(s) 37
BbvI GCAGC 6 cut(s) 166, 376, 398, 546, 833, 961
BccI CCATC 3 cut(s) 83, 895, 1051
BciT130I CCWGG 2 cut(s) 701, 968
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 264, 692, 863
BfaI CTAG 4 cut(s) 17, 521, 531, 942
BfmI CTRYAG 1 cut(s) 828
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 6 cut(s) 180, 387, 390, 535, 822, 975
BlsI GCNGC 6 cut(s) 181, 388, 391, 536, 823, 976
Bme1390I CCNGG 2 cut(s) 701, 968
Bme18I GGWCC 1 cut(s) 1040
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 1040
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 701, 968
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 3 cut(s) 166, 608, 979
BmuI ACTGGG 1 cut(s) 244
BpmI CTGGAG 3 cut(s) 467, 483, 533
BpuEI CTTGAG 2 cut(s) 156, 701
Bsa29I ATCGAT 1 cut(s) 726
BsaBI GATNNNNATC 1 cut(s) 732
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 5 cut(s) 9, 111, 237, 700, 1033
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 947
Bse1I ACTGG 3 cut(s) 250, 450, 1099
Bse8I GATNNNNATC 1 cut(s) 732
BseBI CCWGG 2 cut(s) 701, 968
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 5 cut(s) 9, 111, 237, 700, 1033
BseGI GGATG 5 cut(s) 94, 361, 379, 916, 1120
BseJI GATNNNNATC 1 cut(s) 732
BseLI CCNNNNNNNGG 2 cut(s) 135, 947
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 3 cut(s) 250, 450, 1099
BseXI GCAGC 6 cut(s) 166, 376, 398, 546, 833, 961
BsgI GTGCAG 1 cut(s) 375
BshVI ATCGAT 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 112
BslFI GGGAC 2 cut(s) 232, 238
BslI CCNNNNNNNGG 2 cut(s) 135, 947
BsmAI GTCTC 3 cut(s) 264, 692, 863
BsmFI GGGAC 2 cut(s) 232, 238
BsmI GAATGC 2 cut(s) 336, 427
Bso31I GGTCTC 1 cut(s) 863
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 9 cut(s) 139, 547, 627, 640, 704, 733, 795, 883, 1097
BspCNI CTCAG 1 cut(s) 274
BspDI ATCGAT 1 cut(s) 726
BspHI TCATGA 2 cut(s) 397, 1072
BspLI GGNNCC 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 832
BspPI GGATC 5 cut(s) 147, 712, 728, 878, 1105
BspTNI GGTCTC 1 cut(s) 863
BsrI ACTGG 3 cut(s) 250, 450, 1099
BssECI CCNNGG 5 cut(s) 9, 111, 237, 700, 1033
BssMI GATC 9 cut(s) 139, 547, 627, 640, 704, 733, 795, 883, 1097
BssT1I CCWWGG 2 cut(s) 9, 1033
Bst2UI CCWGG 2 cut(s) 701, 968
Bst4CI ACNGT 2 cut(s) 246, 680
BstAPI GCANNNNNTGC 1 cut(s) 827
BstDEI CTNAG 1 cut(s) 261
BstENI CCTNNNNNAGG 1 cut(s) 945
BstF5I GGATG 5 cut(s) 94, 361, 379, 916, 1120
BstHHI GCGC 3 cut(s) 215, 556, 994
BstKTI GATC 9 cut(s) 142, 550, 630, 643, 707, 736, 798, 886, 1100
BstMAI GTCTC 3 cut(s) 264, 692, 863
BstMBI GATC 9 cut(s) 139, 547, 627, 640, 704, 733, 795, 883, 1097
BstMWI GCNNNNNNNGC 2 cut(s) 551, 827
BstNI CCWGG 2 cut(s) 701, 968
BstSCI CCNGG 2 cut(s) 699, 966
BstSFI CTRYAG 1 cut(s) 828
BstV1I GCAGC 6 cut(s) 166, 376, 398, 546, 833, 961
Bsu15I ATCGAT 1 cut(s) 726
BsuI GTATCC 1 cut(s) 415
BsuTUI ATCGAT 1 cut(s) 726
BtsCI GGATG 5 cut(s) 94, 361, 379, 916, 1120
BtsIMutI CAGTG 2 cut(s) 613, 685
CaiI CAGNNNCTG 3 cut(s) 256, 389, 827
CciI TCATGA 2 cut(s) 397, 1072
CfoI GCGC 3 cut(s) 215, 556, 994
Cfr13I GGNCC 1 cut(s) 1040
ClaI ATCGAT 1 cut(s) 726
Csp6I GTAC 2 cut(s) 61, 951
CspCI CAANNNNNGTGG 2 cut(s) 951, 986
CviAII CATG 2 cut(s) 398, 1073
CviQI GTAC 2 cut(s) 61, 951
DdeI CTNAG 1 cut(s) 261
DpnI GATC 9 cut(s) 141, 549, 629, 642, 706, 735, 797, 885, 1099
DpnII GATC 9 cut(s) 139, 547, 627, 640, 704, 733, 795, 883, 1097
Eco130I CCWWGG 2 cut(s) 9, 1033
Eco24I GRGCYC 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 863
Eco47I GGWCC 1 cut(s) 1040
Eco57I CTGAAG 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 112
EcoNI CCTNNNNNAGG 1 cut(s) 945
EcoRII CCWGG 2 cut(s) 699, 966
EcoT14I CCWWGG 2 cut(s) 9, 1033
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 2 cut(s) 9, 1033
FaeI CATG 2 cut(s) 401, 1076
FaiI YATR 8 cut(s) 222, 308, 314, 399, 659, 773, 848, 1074
FaqI GGGAC 2 cut(s) 232, 238
FatI CATG 2 cut(s) 397, 1072
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 6 cut(s) 180, 387, 390, 535, 822, 975
FokI GGATG 5 cut(s) 101, 368, 386, 923, 1127
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 6 cut(s) 180, 387, 390, 535, 822, 975
FspBI CTAG 4 cut(s) 17, 521, 531, 942
GlaI GCGC 3 cut(s) 214, 555, 993
GluI GCNGC 6 cut(s) 180, 387, 390, 535, 822, 975
GsuI CTGGAG 3 cut(s) 467, 483, 533
HhaI GCGC 3 cut(s) 215, 556, 994
Hin1II CATG 2 cut(s) 401, 1076
Hin6I GCGC 3 cut(s) 213, 554, 992
HinP1I GCGC 3 cut(s) 213, 554, 992
HincII GTYRAC 2 cut(s) 528, 571
HindII GTYRAC 2 cut(s) 528, 571
HinfI GANTC 9 cut(s) 5, 161, 508, 524, 692, 802, 857, 956, 1124
HpaI GTTAAC 1 cut(s) 571
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 4 cut(s) 457, 528, 571, 743
Hpy188I TCNGA 7 cut(s) 78, 187, 231, 466, 738, 795, 1026
Hpy8I GTNNAC 4 cut(s) 457, 528, 571, 743
Hpy99I CGWCG 2 cut(s) 272, 275
HpyCH4III ACNGT 2 cut(s) 246, 680
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 6 cut(s) 392, 427, 437, 638, 785, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 551, 827
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 2 cut(s) 401, 1076
HspAI GCGC 3 cut(s) 213, 554, 992
Ksp22I TGATCA 1 cut(s) 547
KspAI GTTAAC 1 cut(s) 571
Kzo9I GATC 9 cut(s) 139, 547, 627, 640, 704, 733, 795, 883, 1097
LmnI GCTCC 2 cut(s) 92, 578
Lsp1109I GCAGC 6 cut(s) 166, 376, 398, 546, 833, 961
LweI GCATC 3 cut(s) 166, 608, 979
MaeI CTAG 4 cut(s) 17, 521, 531, 942
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 1 cut(s) 143
MalI GATC 9 cut(s) 141, 549, 629, 642, 706, 735, 797, 885, 1099
MboI GATC 9 cut(s) 139, 547, 627, 640, 704, 733, 795, 883, 1097
MboII GAAGA 3 cut(s) 164, 848, 1077
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 5 cut(s) 133, 361, 421, 708, 839
MlyI GAGTC 2 cut(s) 533, 851
MmeI TCCRAC 1 cut(s) 210
MseI TTAA 2 cut(s) 570, 1029
MspA1I CMGCKG 1 cut(s) 389
MspR9I CCNGG 2 cut(s) 701, 968
Mva1269I GAATGC 2 cut(s) 336, 427
MvaI CCWGG 2 cut(s) 701, 968
MwoI GCNNNNNNNGC 2 cut(s) 551, 827
NdeII GATC 9 cut(s) 139, 547, 627, 640, 704, 733, 795, 883, 1097
NlaIII CATG 2 cut(s) 401, 1076
NlaIV GGNNCC 1 cut(s) 94
NmeAIII GCCGAG 1 cut(s) 262
PagI TCATGA 2 cut(s) 397, 1072
PctI GAATGC 2 cut(s) 336, 427
PfeI GAWTC 7 cut(s) 5, 161, 508, 692, 802, 956, 1124
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 6 cut(s) 181, 388, 391, 536, 823, 976
PleI GAGTC 2 cut(s) 532, 851
PpsI GAGTC 2 cut(s) 532, 851
Psp1406I AACGTT 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 699, 966
PspGI CCWGG 2 cut(s) 699, 966
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 1040
PstI CTGCAG 1 cut(s) 832
PstNI CAGNNNCTG 3 cut(s) 256, 389, 827
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 62, 952
RsaNI GTAC 2 cut(s) 61, 951
SaqAI TTAA 2 cut(s) 570, 1029
SatI GCNGC 6 cut(s) 180, 387, 390, 535, 822, 975
Sau3AI GATC 9 cut(s) 139, 547, 627, 640, 704, 733, 795, 883, 1097
Sau96I GGNCC 1 cut(s) 1040
SchI GAGTC 2 cut(s) 533, 851
ScrFI CCNGG 2 cut(s) 701, 968
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 3 cut(s) 166, 608, 979
SfcI CTRYAG 1 cut(s) 828
SinI GGWCC 1 cut(s) 1040
SmlI CTYRAG 2 cut(s) 171, 716
SmoI CTYRAG 2 cut(s) 171, 716
Sse9I AATT 5 cut(s) 133, 361, 421, 708, 839
SspMI CTAG 4 cut(s) 17, 521, 531, 942
StyD4I CCNGG 2 cut(s) 699, 966
StyI CCWWGG 2 cut(s) 9, 1033
TaaI ACNGT 2 cut(s) 246, 680
TaiI ACGT 1 cut(s) 636
TaqI TCGA 7 cut(s) 159, 267, 690, 726, 767, 855, 1134
TasI AATT 5 cut(s) 133, 361, 421, 708, 839
TfiI GAWTC 7 cut(s) 5, 161, 508, 692, 802, 956, 1124
Tru1I TTAA 2 cut(s) 570, 1029
Tru9I TTAA 2 cut(s) 570, 1029
TscAI CASTG 2 cut(s) 613, 685
TseI GCWGC 6 cut(s) 179, 386, 389, 534, 821, 974
TspDTI ATGAA 8 cut(s) 165, 466, 788, 927, 948, 1022, 1026, 1061
TspRI CASTG 2 cut(s) 613, 685
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 1040
XagI CCTNNNNNAGG 1 cut(s) 945
XapI RAATTY 1 cut(s) 421
XbaI TCTAGA 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 4 cut(s) 17, 521, 531, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.