Rh7BG363300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011113
Physical Location & Seq
Forward (+)
38657044 .. 38660848
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG363300.1

Sequence Viewer

Length: 1149 bp
ATGGATTCCAAGGCTTTAGCAAAATCCAAGAGGGCACACTCTCAACACCACACTAAAAAGTACCACTCGAATCAGAAAGCAAAGCCCCAAGCAGGTGGAGCCAAGGGAACAAACTGGGATCGTTACGAGGAAGAATTCGATTTGGGTTCTGAAGGTGGTGCCTCCGACGTTGTTTTGCCCAAGAGTAAAGGTGCAGATTATAGTCATCTCATTGCTGAGGCACAGTCTCAGTCTCAGTCTCAATTTGACGATGTTCTGTCTGGGGAGTGGAATAAGGGGATTGGGTCTATGCTTTCGGCCAGGGGAGACAGCATTCTATCATGGATTGGAGATGATAATTTTGTTGTGGATGATACGACAGCTCCAAATCACGAGGTATCATTTCTTTCCTTGAATTTGCATTCCCTTGCAGAACAACTGGACAAAGTAGACTTATCACAGAGGCTTTACATTGAGGCAGACCTATTGCCTCCAGAACCGAATGCAGAAGGTTTAGAGTCAACTAGCAGTCAGTCTGCTGATCAGGTGGAAGCAACATTAGTTAACAAAGGAGCCAGAGTAATATCCGAAGAATCAACCTGTGGTGAGTTTCCCGACAAGAGCGATGTAGCAGATCAAGATATTGAGATTATGATATCGAATTCTCCTGACAGTGATTGTCTAGACTTAAATTTGTCTAACATGGGATCAATTTCAGTCAACCAAGTTGATGTTGATCTGAGTAAACTTGAAAAATCCACCGATCAAAGGAAACCACCAGAGTTGAGTGTGAAACCTTTGGCAGGCGTTCCAAACAAGAATGTTGCCACATTTAAGGCAGCAACTGCAGAGGAAGAACTGGATATGCTTCTTGACTCATTTAGTGAGACCAAGATAAATGATTCATCTGGTTTCAGGTTTGTACAGGAAGAAGCTTCTGTGCCTCCACTTCAACTTCCTAGAAAAGGTACAGATTCATCAAAGCTGATGGCTGCCAACCTTGATGATGCGCTTGATGAGTTGATAAATGAAATATCCATTCCAATCAACCAAAGTGGTCCATCTCACCCCCAAGAAAAAATGGCCGTGCATGATTTTGAATCTTCCTTTCGTACTATGTCAAAGTCCAAAGAACTGGATGATTTTGATTCATGGTTGGATACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

382

Amino Acids

41.68

Weight (kDa)

4.5

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 429
AclWI GGATC 2 cut(s) 126, 694
AcoI YGGCCR 2 cut(s) 297, 1062
AcsI RAATTY 4 cut(s) 134, 394, 640, 670
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 4 cut(s) 62, 903, 949, 1093
AfiI CCNNNNNNNGG 4 cut(s) 92, 747, 782, 944
AgsI TTSAA 4 cut(s) 394, 731, 932, 1079
AjnI CCWGG 1 cut(s) 299
AluBI AGCT 3 cut(s) 362, 914, 964
AluI AGCT 3 cut(s) 362, 914, 964
Alw26I GTCTC 5 cut(s) 231, 237, 243, 300, 860
AlwI GGATC 2 cut(s) 126, 694
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 2 cut(s) 297, 1062
ApeKI GCWGC 2 cut(s) 818, 971
ApoI RAATTY 4 cut(s) 134, 394, 640, 670
AspLEI GCGC 1 cut(s) 991
AspS9I GGNCC 1 cut(s) 1037
AsuHPI GGTGA 2 cut(s) 596, 1037
AvaII GGWCC 1 cut(s) 1037
BaeGI GKGCMC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 158
BauI CACGAG 1 cut(s) 371
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 830, 958
BccI CCATC 2 cut(s) 961, 1048
BceAI ACGGC 1 cut(s) 1049
BciT130I CCWGG 1 cut(s) 301
BciVI GTATCC 1 cut(s) 1132
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 5 cut(s) 231, 237, 243, 300, 860
BfaI CTAG 3 cut(s) 504, 662, 939
BfmI CTRYAG 1 cut(s) 825
BfuAI ACCTGC 1 cut(s) 83
BfuI GTATCC 1 cut(s) 1132
BisI GCNGC 2 cut(s) 819, 972
BlsI GCNGC 2 cut(s) 820, 973
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 1037
BmgT120I GGNCC 1 cut(s) 1037
BmiI GGNNCC 3 cut(s) 100, 160, 553
BmrFI CCNGG 1 cut(s) 301
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 976
BmuI ACTGGG 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 714
BsaI GGTCTC 1 cut(s) 860
BsaJI CCNNGG 3 cut(s) 9, 102, 300
BsaXI ACNNNNNCTCC 4 cut(s) 346, 376, 543, 573
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 747, 782, 944
Bse1I ACTGG 4 cut(s) 119, 423, 843, 1119
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 714
BseBI CCWGG 1 cut(s) 301
BseDI CCNNGG 3 cut(s) 9, 102, 300
BseGI GGATG 2 cut(s) 355, 1123
BseJI GATNNNNATC 1 cut(s) 714
BseLI CCNNNNNNNGG 4 cut(s) 92, 747, 782, 944
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 4 cut(s) 207, 242, 248, 710
BseNI ACTGG 4 cut(s) 119, 423, 843, 1119
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 830, 958
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 2 cut(s) 299, 1064
BshNI GGYRCC 1 cut(s) 158
BslI CCNNNNNNNGG 4 cut(s) 92, 747, 782, 944
BsmAI GTCTC 5 cut(s) 231, 237, 243, 300, 860
BsmI GAATGC 3 cut(s) 312, 400, 487
BsnI GGCC 2 cut(s) 299, 1064
Bso31I GGTCTC 1 cut(s) 860
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 901
Bsp143I GATC 6 cut(s) 118, 520, 613, 686, 715, 742
BspANI GGCC 2 cut(s) 299, 1064
BspCNI CTCAG 4 cut(s) 208, 241, 247, 711
BspLI GGNNCC 3 cut(s) 100, 160, 553
BspMAI CTGCAG 1 cut(s) 829
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 2 cut(s) 126, 694
BspT107I GGYRCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 860
BsrDI GCAATG 1 cut(s) 210
BsrGI TGTACA 1 cut(s) 901
BsrI ACTGG 4 cut(s) 119, 423, 843, 1119
BssECI CCNNGG 3 cut(s) 9, 102, 300
BssMI GATC 6 cut(s) 118, 520, 613, 686, 715, 742
BssSI CACGAG 1 cut(s) 371
BssT1I CCWWGG 2 cut(s) 9, 102
Bst2BI CACGAG 1 cut(s) 371
Bst2UI CCWGG 1 cut(s) 301
Bst4CI ACNGT 3 cut(s) 225, 653, 1144
BstAPI GCANNNNNTGC 1 cut(s) 824
BstAUI TGTACA 1 cut(s) 901
BstC8I GCNNGC 1 cut(s) 784
BstDEI CTNAG 4 cut(s) 216, 228, 234, 719
BstENI CCTNNNNNAGG 2 cut(s) 780, 942
BstF5I GGATG 2 cut(s) 355, 1123
BstHHI GCGC 1 cut(s) 991
BstKTI GATC 6 cut(s) 121, 523, 616, 689, 718, 745
BstMAI GTCTC 5 cut(s) 231, 237, 243, 300, 860
BstMBI GATC 6 cut(s) 118, 520, 613, 686, 715, 742
BstMWI GCNNNNNNNGC 2 cut(s) 98, 824
BstNI CCWGG 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 825
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 830, 958
BstXI CCANNNNNNTGG 2 cut(s) 95, 1114
BsuI GTATCC 1 cut(s) 1132
BsuRI GGCC 2 cut(s) 299, 1064
BtgZI GCGATG 1 cut(s) 618
BtsCI GGATG 2 cut(s) 355, 1123
BtsIMutI CAGTG 1 cut(s) 658
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 784
CaiI CAGNNNCTG 1 cut(s) 824
CfoI GCGC 1 cut(s) 991
Cfr13I GGNCC 1 cut(s) 1037
Csp6I GTAC 4 cut(s) 61, 902, 948, 1092
CspCI CAANNNNNGTGG 4 cut(s) 744, 779, 1015, 1050
CviAII CATG 4 cut(s) 321, 682, 1070, 1131
CviQI GTAC 4 cut(s) 61, 902, 948, 1092
DdeI CTNAG 4 cut(s) 216, 228, 234, 719
DpnI GATC 6 cut(s) 120, 522, 615, 688, 717, 744
DpnII GATC 6 cut(s) 118, 520, 613, 686, 715, 742
EaeI YGGCCR 2 cut(s) 297, 1062
Eco130I CCWWGG 2 cut(s) 9, 102
Eco31I GGTCTC 1 cut(s) 860
Eco32I GATATC 1 cut(s) 636
Eco47I GGWCC 1 cut(s) 1037
Eco57I CTGAAG 1 cut(s) 171
EcoNI CCTNNNNNAGG 2 cut(s) 780, 942
EcoRI GAATTC 2 cut(s) 134, 640
EcoRII CCWGG 1 cut(s) 299
EcoRV GATATC 1 cut(s) 636
EcoT14I CCWWGG 2 cut(s) 9, 102
ErhI CCWWGG 2 cut(s) 9, 102
FaeI CATG 4 cut(s) 324, 685, 1073, 1134
FaiI YATR 9 cut(s) 201, 290, 322, 632, 683, 845, 1071, 1097, 1132
FatI CATG 4 cut(s) 320, 681, 1069, 1130
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 819, 972
FokI GGATG 2 cut(s) 362, 1130
Fsp4HI GCNGC 2 cut(s) 819, 972
FspBI CTAG 3 cut(s) 504, 662, 939
GlaI GCGC 1 cut(s) 990
GluI GCNGC 2 cut(s) 819, 972
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 2 cut(s) 299, 1064
HhaI GCGC 1 cut(s) 991
Hin1II CATG 4 cut(s) 324, 685, 1073, 1134
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HincII GTYRAC 3 cut(s) 501, 544, 700
HindII GTYRAC 3 cut(s) 501, 544, 700
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 9 cut(s) 5, 70, 497, 572, 854, 881, 953, 1079, 1127
HpaI GTTAAC 1 cut(s) 544
HphI GGTGA 2 cut(s) 596, 1037
Hpy166II GTNNAC 5 cut(s) 430, 501, 544, 700, 725
Hpy188I TCNGA 5 cut(s) 75, 151, 166, 568, 720
Hpy188III TCNNGA 7 cut(s) 371, 473, 593, 617, 647, 662, 851
Hpy8I GTNNAC 5 cut(s) 430, 501, 544, 700, 725
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 2 cut(s) 146, 482
HpyCH4III ACNGT 3 cut(s) 225, 653, 1144
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 6 cut(s) 194, 400, 410, 485, 827, 1069
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 824
HpyF3I CTNAG 4 cut(s) 216, 228, 234, 719
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 4 cut(s) 324, 685, 1073, 1134
HspAI GCGC 1 cut(s) 989
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 544
Kzo9I GATC 6 cut(s) 118, 520, 613, 686, 715, 742
LmnI GCTCC 3 cut(s) 98, 367, 551
Lsp1109I GCAGC 2 cut(s) 830, 958
LweI GCATC 1 cut(s) 976
MaeI CTAG 3 cut(s) 504, 662, 939
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 122
MalI GATC 6 cut(s) 120, 522, 615, 688, 717, 744
MboI GATC 6 cut(s) 118, 520, 613, 686, 715, 742
MboII GAAGA 5 cut(s) 143, 581, 845, 920, 1074
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 7 cut(s) 134, 242, 337, 394, 640, 670, 690
MlyI GAGTC 2 cut(s) 506, 848
MmeI TCCRAC 2 cut(s) 189, 1116
MseI TTAA 3 cut(s) 543, 668, 813
MspR9I CCNGG 1 cut(s) 301
Mva1269I GAATGC 3 cut(s) 312, 400, 487
MvaI CCWGG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 98, 824
NdeII GATC 6 cut(s) 118, 520, 613, 686, 715, 742
NlaIII CATG 4 cut(s) 324, 685, 1073, 1134
NlaIV GGNNCC 3 cut(s) 100, 160, 553
PaqCI CACCTGC 1 cut(s) 83
PctI GAATGC 3 cut(s) 312, 400, 487
PfeI GAWTC 7 cut(s) 5, 70, 572, 881, 953, 1079, 1127
PkrI GCNGC 2 cut(s) 820, 973
PleI GAGTC 2 cut(s) 505, 848
PpsI GAGTC 2 cut(s) 505, 848
Psp6I CCWGG 1 cut(s) 299
PspGI CCWGG 1 cut(s) 299
PspN4I GGNNCC 3 cut(s) 100, 160, 553
PspPI GGNCC 1 cut(s) 1037
PstI CTGCAG 1 cut(s) 829
PstNI CAGNNNCTG 1 cut(s) 824
RsaI GTAC 4 cut(s) 62, 903, 949, 1093
RsaNI GTAC 4 cut(s) 61, 902, 948, 1092
SaqAI TTAA 3 cut(s) 543, 668, 813
SatI GCNGC 2 cut(s) 819, 972
Sau3AI GATC 6 cut(s) 118, 520, 613, 686, 715, 742
Sau96I GGNCC 1 cut(s) 1037
SchI GAGTC 2 cut(s) 506, 848
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 1 cut(s) 976
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 1 cut(s) 1037
Sse9I AATT 7 cut(s) 134, 242, 337, 394, 640, 670, 690
SspMI CTAG 3 cut(s) 504, 662, 939
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 2 cut(s) 9, 102
TaaI ACNGT 3 cut(s) 225, 653, 1144
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 68, 138, 638
TasI AATT 7 cut(s) 134, 242, 337, 394, 640, 670, 690
TatI WGTACW 1 cut(s) 901
TfiI GAWTC 7 cut(s) 5, 70, 572, 881, 953, 1079, 1127
Tru1I TTAA 3 cut(s) 543, 668, 813
Tru9I TTAA 3 cut(s) 543, 668, 813
TscAI CASTG 1 cut(s) 658
TseI GCWGC 2 cut(s) 818, 971
TspDTI ATGAA 4 cut(s) 873, 945, 1023, 1119
TspRI CASTG 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 1037
XagI CCTNNNNNAGG 2 cut(s) 780, 942
XapI RAATTY 4 cut(s) 134, 394, 640, 670
XbaI TCTAGA 1 cut(s) 661
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 3 cut(s) 504, 662, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.