Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011113

Physical Location & Seq

Genomic Coordinates Reverse (-)

48584100 .. 48588150

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG375000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGATTCCAAGGCTTTAGCAAAATCCAAGAGGGCACACTCTCAACACCACACTAAAAAGTACCACTCGAATCAGAAAGCAAAGCCCCAAGCAGGTGGAGCCAAGGGGAAGCAAATCCCAACAAACTGGGATCGTTACGAGGAAGAATTCGATTTGGGTTCTGAAGGTGTTGCCTCCGACATTGTTTTGCCCAAGAGTAAAGGTGCAGATTATAGTCATCTCATTGCTGAGGCACAGTCTCAGTCTCAATTTGACGATGTTCTGTCTGGGGAGTGGAATAAGGGAATTGGGTCTATGCTTTCGGCCAGGGGAGACAGCATTCTATCATGGATTGGAGATGATAATTTTGTTGTGGATGATAAGACAGCTCCAAATCACGAGGTATCATTTCTTTCCTTGAATTTGCATTCCCTTGCAGAACAACTGGACAAAGTGGACTTATCACAGAGGCTTTACATTGAGGCAGACCTATTGCCTCCAGAACTGAATGCGGAAGGTTTAGAGTCTACTAGCAGTCGGTCTGCTGATCAGGTGGAAGCAACATTAGTTAACAAAGGAGCCAGAGTAATATCCGAAGAATCAACCTGTGGTGAGTTTCCCGACAAGAGCGACATAGCAGATCAAGATATTGAGATTATGATATCGAATTCTCCTGAAATTGATTGTCTAGACCCAAATTTGTCTAACATGGGATCAATTTCAGTCAACCAAGTTGATGTTGATCTGAGTAAACTTGAAAAATCCACCAATCAAAGGAAACCACCAGAGTTGAGTGTGAAACCTTTGGCAGGCGTTCCAAACAAGAATGTTGCCACATTTAAGGCAGCAACTGCAGAGGAAGAACTGGATATGCTTCTTGACTCATTTAGTGAGACCAAGATAAATGATTCATCTGGTTTCAGGTTTGTACAGGAAGAAGATTCTGTGCCTTCACTTCAACTTCCTAGAAAAGGTACAGATTCATCAAAGCTGATGGCTGCCAACCTTGATGATGCGCTTGATGACTTGATAAATGAAATATCCATTCCAATCAACCAAAGTGGTCTATCTCACCCCCAAGAAAAAATGGCCGTGCATGATTTTGAATCTTCCTCTCGTACTATGTCAAAGTCCAAAGAACTGGATGATTTTGATTCATGGTTGGATACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

42.07

Weight (kDa)

4.59

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011113)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44150
fragaria_vesca	FvH4_5g30510 FvH4_5g30510
malus_domestica	MD15G1126800.v1.1
prunus_persica	Prupe.2G094200_v2.0.a1
pyrus_communis	pycom15g11440
rosa_chinensis	RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata	RLG00000001831
rosa_multiflora	Rmu_sc0000259.1_g000043
rosa_roxburghii	Rroxscaffold_3G00233960
rosa_rugosa	Rorug07G0228200 Rorug07G0228300
rosa_samantha	Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana	Rw7G031570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	2 cut(s)	138, 700
AcoI	YGGCCR	2 cut(s)	303, 1068
AcsI	RAATTY	4 cut(s)	146, 400, 646, 676
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	4 cut(s)	62, 909, 955, 1099
AfiI	CCNNNNNNNGG	4 cut(s)	92, 753, 788, 950
AgsI	TTSAA	4 cut(s)	400, 737, 938, 1085
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	2 cut(s)	368, 970
AluI	AGCT	2 cut(s)	368, 970
Alw26I	GTCTC	4 cut(s)	243, 249, 306, 866
AlwI	GGATC	2 cut(s)	138, 700
AlwNI	CAGNNNCTG	1 cut(s)	830
AoxI	GGCC	2 cut(s)	303, 1068
ApeKI	GCWGC	2 cut(s)	824, 977
ApoI	RAATTY	4 cut(s)	146, 400, 646, 676
AspLEI	GCGC	1 cut(s)	997
AsuHPI	GGTGA	2 cut(s)	602, 1043
BaeGI	GKGCMC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	377
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	836, 964
BccI	CCATC	1 cut(s)	967
BceAI	ACGGC	1 cut(s)	1055
BciT130I	CCWGG	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	1138
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	4 cut(s)	243, 249, 306, 866
BfaI	CTAG	3 cut(s)	510, 668, 945
BfmI	CTRYAG	1 cut(s)	831
BfuAI	ACCTGC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	1138
BisI	GCNGC	2 cut(s)	825, 978
BlsI	GCNGC	2 cut(s)	826, 979
Bme1390I	CCNGG	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	100, 559
BmrFI	CCNGG	1 cut(s)	307
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	982
BmuI	ACTGGG	1 cut(s)	136
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	720
BsaI	GGTCTC	1 cut(s)	866
BsaJI	CCNNGG	3 cut(s)	9, 102, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 753, 788, 950
Bse1I	ACTGG	4 cut(s)	131, 429, 849, 1125
Bse3DI	GCAATG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	3 cut(s)	9, 102, 306
BseGI	GGATG	2 cut(s)	361, 1129
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	4 cut(s)	92, 753, 788, 950
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	3 cut(s)	219, 254, 716
BseNI	ACTGG	4 cut(s)	131, 429, 849, 1125
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	836, 964
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	305, 1070
BslI	CCNNNNNNNGG	4 cut(s)	92, 753, 788, 950
BsmAI	GTCTC	4 cut(s)	243, 249, 306, 866
BsmI	GAATGC	3 cut(s)	318, 406, 493
BsnI	GGCC	2 cut(s)	305, 1070
Bso31I	GGTCTC	1 cut(s)	866
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp1407I	TGTACA	1 cut(s)	907
Bsp143I	GATC	5 cut(s)	130, 526, 619, 692, 721
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	2 cut(s)	305, 1070
BspCNI	CTCAG	3 cut(s)	220, 253, 717
BspLI	GGNNCC	2 cut(s)	100, 559
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	138, 700
BspTNI	GGTCTC	1 cut(s)	866
BsrDI	GCAATG	1 cut(s)	222
BsrGI	TGTACA	1 cut(s)	907
BsrI	ACTGG	4 cut(s)	131, 429, 849, 1125
BssECI	CCNNGG	3 cut(s)	9, 102, 306
BssMI	GATC	5 cut(s)	130, 526, 619, 692, 721
BssSI	CACGAG	1 cut(s)	377
BssT1I	CCWWGG	2 cut(s)	9, 102
Bst2BI	CACGAG	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	2 cut(s)	237, 1150
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstAUI	TGTACA	1 cut(s)	907
BstC8I	GCNNGC	1 cut(s)	790
BstDEI	CTNAG	3 cut(s)	228, 240, 725
BstENI	CCTNNNNNAGG	2 cut(s)	786, 948
BstF5I	GGATG	2 cut(s)	361, 1129
BstHHI	GCGC	1 cut(s)	997
BstKTI	GATC	5 cut(s)	133, 529, 622, 695, 724
BstMAI	GTCTC	4 cut(s)	243, 249, 306, 866
BstMBI	GATC	5 cut(s)	130, 526, 619, 692, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 830
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	831
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	836, 964
BstXI	CCANNNNNNTGG	3 cut(s)	95, 126, 1120
BsuI	GTATCC	1 cut(s)	1138
BsuRI	GGCC	2 cut(s)	305, 1070
BtsCI	GGATG	2 cut(s)	361, 1129
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	790
CaiI	CAGNNNCTG	1 cut(s)	830
CfoI	GCGC	1 cut(s)	997
Csp6I	GTAC	4 cut(s)	61, 908, 954, 1098
CspCI	CAANNNNNGTGG	4 cut(s)	750, 785, 1021, 1056
CviAII	CATG	4 cut(s)	327, 688, 1076, 1137
CviQI	GTAC	4 cut(s)	61, 908, 954, 1098
DdeI	CTNAG	3 cut(s)	228, 240, 725
DpnI	GATC	5 cut(s)	132, 528, 621, 694, 723
DpnII	GATC	5 cut(s)	130, 526, 619, 692, 721
EaeI	YGGCCR	2 cut(s)	303, 1068
Eco130I	CCWWGG	2 cut(s)	9, 102
Eco31I	GGTCTC	1 cut(s)	866
Eco32I	GATATC	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	183
EcoNI	CCTNNNNNAGG	2 cut(s)	786, 948
EcoRI	GAATTC	2 cut(s)	146, 646
EcoRII	CCWGG	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	642
EcoT14I	CCWWGG	2 cut(s)	9, 102
ErhI	CCWWGG	2 cut(s)	9, 102
FaeI	CATG	4 cut(s)	330, 691, 1079, 1140
FatI	CATG	4 cut(s)	326, 687, 1075, 1136
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	2 cut(s)	825, 978
FokI	GGATG	2 cut(s)	368, 1136
Fsp4HI	GCNGC	2 cut(s)	825, 978
FspBI	CTAG	3 cut(s)	510, 668, 945
GlaI	GCGC	1 cut(s)	996
GluI	GCNGC	2 cut(s)	825, 978
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	305, 1070
HhaI	GCGC	1 cut(s)	997
Hin1II	CATG	4 cut(s)	330, 691, 1079, 1140
Hin6I	GCGC	1 cut(s)	995
HinP1I	GCGC	1 cut(s)	995
HincII	GTYRAC	2 cut(s)	550, 706
HindII	GTYRAC	2 cut(s)	550, 706
HpaI	GTTAAC	1 cut(s)	550
HphI	GGTGA	2 cut(s)	602, 1043
Hpy166II	GTNNAC	5 cut(s)	436, 507, 550, 706, 731
Hpy188I	TCNGA	5 cut(s)	75, 163, 178, 574, 726
Hpy188III	TCNNGA	7 cut(s)	377, 479, 599, 623, 653, 668, 857
Hpy8I	GTNNAC	5 cut(s)	436, 507, 550, 706, 731
HpyAV	CCTTC	3 cut(s)	158, 488, 939
HpyCH4III	ACNGT	2 cut(s)	237, 1150
HpyCH4V	TGCA	5 cut(s)	206, 406, 416, 833, 1075
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 830
HpyF3I	CTNAG	3 cut(s)	228, 240, 725
Hsp92II	CATG	4 cut(s)	330, 691, 1079, 1140
HspAI	GCGC	1 cut(s)	995
Ksp22I	TGATCA	1 cut(s)	526
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	5 cut(s)	130, 526, 619, 692, 721
LmnI	GCTCC	3 cut(s)	98, 373, 557
Lsp1109I	GCAGC	2 cut(s)	836, 964
LweI	GCATC	1 cut(s)	982
MaeI	CTAG	3 cut(s)	510, 668, 945
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	5 cut(s)	132, 528, 621, 694, 723
MboI	GATC	5 cut(s)	130, 526, 619, 692, 721
MboII	GAAGA	6 cut(s)	155, 587, 851, 926, 929, 1080
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	9 cut(s)	146, 248, 285, 343, 400, 646, 657, 676, 696
MlyI	GAGTC	2 cut(s)	512, 854
MmeI	TCCRAC	2 cut(s)	201, 1122
MseI	TTAA	2 cut(s)	549, 819
MspR9I	CCNGG	1 cut(s)	307
Mva1269I	GAATGC	3 cut(s)	318, 406, 493
MvaI	CCWGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	2 cut(s)	98, 830
NdeII	GATC	5 cut(s)	130, 526, 619, 692, 721
NlaIII	CATG	4 cut(s)	330, 691, 1079, 1140
NlaIV	GGNNCC	2 cut(s)	100, 559
PaqCI	CACCTGC	1 cut(s)	83
PctI	GAATGC	3 cut(s)	318, 406, 493
PfeI	GAWTC	8 cut(s)	5, 70, 578, 887, 920, 959, 1085, 1133
PkrI	GCNGC	2 cut(s)	826, 979
PleI	GAGTC	2 cut(s)	511, 854
PpsI	GAGTC	2 cut(s)	511, 854
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	100, 559
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	830
RsaI	GTAC	4 cut(s)	62, 909, 955, 1099
RsaNI	GTAC	4 cut(s)	61, 908, 954, 1098
SaqAI	TTAA	2 cut(s)	549, 819
SatI	GCNGC	2 cut(s)	825, 978
Sau3AI	GATC	5 cut(s)	130, 526, 619, 692, 721
SchI	GAGTC	2 cut(s)	512, 854
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	37
SfaNI	GCATC	1 cut(s)	982
SfcI	CTRYAG	1 cut(s)	831
Sse9I	AATT	9 cut(s)	146, 248, 285, 343, 400, 646, 657, 676, 696
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	3 cut(s)	510, 668, 945
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	9, 102
TaaI	ACNGT	2 cut(s)	237, 1150
TaqI	TCGA	3 cut(s)	68, 150, 644
TaqII	GACCGA	1 cut(s)	507
TasI	AATT	9 cut(s)	146, 248, 285, 343, 400, 646, 657, 676, 696
TatI	WGTACW	1 cut(s)	907
TfiI	GAWTC	8 cut(s)	5, 70, 578, 887, 920, 959, 1085, 1133
Tru1I	TTAA	2 cut(s)	549, 819
Tru9I	TTAA	2 cut(s)	549, 819
TseI	GCWGC	2 cut(s)	824, 977
TspDTI	ATGAA	4 cut(s)	879, 951, 1029, 1125
XagI	CCTNNNNNAGG	2 cut(s)	786, 948
XapI	RAATTY	4 cut(s)	146, 400, 646, 676
XbaI	TCTAGA	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	506
XspI	CTAG	3 cut(s)	510, 668, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.