Rmu_sc0000259.1_g000043

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000259.1
OG0011113
Physical Location & Seq
Reverse (-)
170004 .. 173299
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000259.1_g000043.1.cds

Sequence Viewer

Length: 1155 bp
atggattccaaggctttagcaaaatccaagagggcacactctcaacaccacactaaaaagtaccactcgaatcagaaagcaaagccccaagcaggtggagccaaggggaagcaaatcccaacaaactgggatcgttacgaggaagaattcgatttgggttctgaaggtggtgcctccgacattgttttgcccaagagtaaaggtgcagattatagtcatctcattgctgaggcacagtctcagtctcaatttgacgatgttctgtctggggagtggaataagggaattgggtctatgctttcggccaggggagacagcattctatcatggattggagatgataattttgttgtcgatgataagacagctccaaatcacgaggtatcatttctttccttgaatttgcattcccttgcagaacaactggacaaagtagacttatcacagaggctttacattgaggcagacctattgcctccagaactgaatgcggaaggtttagagtcaactagcagtcagtctgctgatcaggtggaagcaacattagttgacaaaggagccagagtaatatccgaagaattaacctggggtgagtttcccgacaagagcgacgtagcagatcaagatattgagattatgatatcgaattctcctgacattgattgtctagacccaaatttgtctaacatgggatcaatttcagtcaaccaagttgatgttgatctgagtaaacttgaaaaatccaccaatcaaaggaaaccaccagagtcgagtgtgaaacctttggcaggcattccaaacaagaatgttgccacatttaaggcagcaactgcagaggaagaactggatatgcttcttgactcatttagtgagaccaacataaatgattcatctggtttcaggtttgtacaggaagaagcttctgtgcctccacttcaacttcctagaaaaggtacagattcatcaaagctgatggctgccaaccttgatgatgcgcttgatgacttgataaatgaaatatccattccaataaaccaaagtggtccatctcacccccaagaaaaaatggccgtgcatgattttgattcttcctctcgtactatgtcaaagtccaaagaactggatgattttgattcatggttggatacagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

41.99

Weight (kDa)

4.51

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 435
AciI CCGC 1 cut(s) 491
AclWI GGATC 2 cut(s) 138, 700
AcoI YGGCCR 2 cut(s) 303, 1068
AcsI RAATTY 4 cut(s) 146, 400, 646, 676
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 4 cut(s) 62, 909, 955, 1099
AfiI CCNNNNNNNGG 4 cut(s) 92, 753, 788, 950
AgsI TTSAA 3 cut(s) 400, 737, 938
AjnI CCWGG 2 cut(s) 305, 584
AluBI AGCT 3 cut(s) 368, 920, 970
AluI AGCT 3 cut(s) 368, 920, 970
Alw26I GTCTC 4 cut(s) 243, 249, 306, 866
AlwI GGATC 2 cut(s) 138, 700
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 2 cut(s) 303, 1068
ApeKI GCWGC 2 cut(s) 824, 977
ApoI RAATTY 4 cut(s) 146, 400, 646, 676
AspLEI GCGC 1 cut(s) 997
AspS9I GGNCC 1 cut(s) 1043
AsuHPI GGTGA 2 cut(s) 602, 1043
AvaII GGWCC 1 cut(s) 1043
BaeGI GKGCMC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 170
BauI CACGAG 1 cut(s) 377
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 836, 964
BccI CCATC 2 cut(s) 967, 1054
BceAI ACGGC 1 cut(s) 1055
BciT130I CCWGG 2 cut(s) 307, 586
BciVI GTATCC 1 cut(s) 1138
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 4 cut(s) 243, 249, 306, 866
BfaI CTAG 3 cut(s) 510, 668, 945
BfmI CTRYAG 1 cut(s) 831
BfuAI ACCTGC 1 cut(s) 83
BfuI GTATCC 1 cut(s) 1138
BisI GCNGC 2 cut(s) 825, 978
BlsI GCNGC 2 cut(s) 826, 979
Bme1390I CCNGG 2 cut(s) 307, 586
Bme18I GGWCC 1 cut(s) 1043
BmgT120I GGNCC 1 cut(s) 1043
BmiI GGNNCC 3 cut(s) 100, 172, 559
BmrFI CCNGG 2 cut(s) 307, 586
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 982
BmuI ACTGGG 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 462
Bpu10I CCTNAGC 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 866
BsaJI CCNNGG 4 cut(s) 9, 102, 306, 585
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 753, 788, 950
Bse1I ACTGG 4 cut(s) 131, 429, 849, 1125
Bse3DI GCAATG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 720
BseBI CCWGG 2 cut(s) 307, 586
BseDI CCNNGG 4 cut(s) 9, 102, 306, 585
BseGI GGATG 1 cut(s) 1129
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 4 cut(s) 92, 753, 788, 950
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 219, 254, 716
BseNI ACTGG 4 cut(s) 131, 429, 849, 1125
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 2 cut(s) 836, 964
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 2 cut(s) 305, 1070
BshNI GGYRCC 1 cut(s) 170
BslI CCNNNNNNNGG 4 cut(s) 92, 753, 788, 950
BsmAI GTCTC 4 cut(s) 243, 249, 306, 866
BsmI GAATGC 4 cut(s) 318, 406, 493, 792
BsnI GGCC 2 cut(s) 305, 1070
Bso31I GGTCTC 1 cut(s) 866
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 907
Bsp143I GATC 5 cut(s) 130, 526, 619, 692, 721
BspACI CCGC 1 cut(s) 491
BspANI GGCC 2 cut(s) 305, 1070
BspCNI CTCAG 3 cut(s) 220, 253, 717
BspLI GGNNCC 3 cut(s) 100, 172, 559
BspMAI CTGCAG 1 cut(s) 835
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 2 cut(s) 138, 700
BspT107I GGYRCC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 866
BsrDI GCAATG 1 cut(s) 222
BsrGI TGTACA 1 cut(s) 907
BsrI ACTGG 4 cut(s) 131, 429, 849, 1125
BssECI CCNNGG 4 cut(s) 9, 102, 306, 585
BssMI GATC 5 cut(s) 130, 526, 619, 692, 721
BssSI CACGAG 1 cut(s) 377
BssT1I CCWWGG 2 cut(s) 9, 102
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 307, 586
Bst4CI ACNGT 2 cut(s) 237, 1150
BstAPI GCANNNNNTGC 1 cut(s) 830
BstAUI TGTACA 1 cut(s) 907
BstC8I GCNNGC 1 cut(s) 790
BstDEI CTNAG 3 cut(s) 228, 240, 725
BstENI CCTNNNNNAGG 2 cut(s) 786, 948
BstF5I GGATG 1 cut(s) 1129
BstHHI GCGC 1 cut(s) 997
BstKTI GATC 5 cut(s) 133, 529, 622, 695, 724
BstMAI GTCTC 4 cut(s) 243, 249, 306, 866
BstMBI GATC 5 cut(s) 130, 526, 619, 692, 721
BstMWI GCNNNNNNNGC 2 cut(s) 98, 830
BstNI CCWGG 2 cut(s) 307, 586
BstSCI CCNGG 2 cut(s) 305, 584
BstSFI CTRYAG 1 cut(s) 831
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 836, 964
BstXI CCANNNNNNTGG 3 cut(s) 95, 126, 1120
BsuI GTATCC 1 cut(s) 1138
BsuRI GGCC 2 cut(s) 305, 1070
BtsCI GGATG 1 cut(s) 1129
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 790
CaiI CAGNNNCTG 1 cut(s) 830
CfoI GCGC 1 cut(s) 997
Cfr13I GGNCC 1 cut(s) 1043
Csp6I GTAC 4 cut(s) 61, 908, 954, 1098
CviAII CATG 4 cut(s) 327, 688, 1076, 1137
CviQI GTAC 4 cut(s) 61, 908, 954, 1098
DdeI CTNAG 3 cut(s) 228, 240, 725
DpnI GATC 5 cut(s) 132, 528, 621, 694, 723
DpnII GATC 5 cut(s) 130, 526, 619, 692, 721
EaeI YGGCCR 2 cut(s) 303, 1068
Eco130I CCWWGG 2 cut(s) 9, 102
Eco31I GGTCTC 1 cut(s) 866
Eco32I GATATC 1 cut(s) 642
Eco47I GGWCC 1 cut(s) 1043
Eco57I CTGAAG 1 cut(s) 183
EcoNI CCTNNNNNAGG 2 cut(s) 786, 948
EcoRI GAATTC 2 cut(s) 146, 646
EcoRII CCWGG 2 cut(s) 305, 584
EcoRV GATATC 1 cut(s) 642
EcoT14I CCWWGG 2 cut(s) 9, 102
ErhI CCWWGG 2 cut(s) 9, 102
FaeI CATG 4 cut(s) 330, 691, 1079, 1140
FatI CATG 4 cut(s) 326, 687, 1075, 1136
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 825, 978
FokI GGATG 1 cut(s) 1136
Fsp4HI GCNGC 2 cut(s) 825, 978
FspBI CTAG 3 cut(s) 510, 668, 945
GlaI GCGC 1 cut(s) 996
GluI GCNGC 2 cut(s) 825, 978
GsuI CTGGAG 1 cut(s) 462
HaeIII GGCC 2 cut(s) 305, 1070
HhaI GCGC 1 cut(s) 997
Hin1II CATG 4 cut(s) 330, 691, 1079, 1140
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HincII GTYRAC 3 cut(s) 507, 550, 706
HindII GTYRAC 3 cut(s) 507, 550, 706
HindIII AAGCTT 1 cut(s) 918
HinfI GANTC 9 cut(s) 5, 70, 503, 767, 860, 887, 959, 1085, 1133
HphI GGTGA 2 cut(s) 602, 1043
Hpy166II GTNNAC 5 cut(s) 436, 507, 550, 706, 731
Hpy188I TCNGA 5 cut(s) 75, 163, 178, 574, 726
Hpy188III TCNNGA 7 cut(s) 377, 479, 599, 623, 653, 668, 857
Hpy8I GTNNAC 5 cut(s) 436, 507, 550, 706, 731
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 2 cut(s) 158, 488
HpyCH4III ACNGT 2 cut(s) 237, 1150
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 5 cut(s) 206, 406, 416, 833, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 830
HpyF3I CTNAG 3 cut(s) 228, 240, 725
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 4 cut(s) 330, 691, 1079, 1140
HspAI GCGC 1 cut(s) 995
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 5 cut(s) 130, 526, 619, 692, 721
LmnI GCTCC 3 cut(s) 98, 373, 557
Lsp1109I GCAGC 2 cut(s) 836, 964
LweI GCATC 1 cut(s) 982
MaeI CTAG 3 cut(s) 510, 668, 945
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 1 cut(s) 134
MalI GATC 5 cut(s) 132, 528, 621, 694, 723
MboI GATC 5 cut(s) 130, 526, 619, 692, 721
MboII GAAGA 5 cut(s) 155, 587, 851, 926, 1080
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 9 cut(s) 146, 248, 285, 343, 400, 578, 646, 676, 696
MlyI GAGTC 3 cut(s) 512, 776, 854
MmeI TCCRAC 2 cut(s) 201, 1122
MseI TTAA 2 cut(s) 581, 819
MspR9I CCNGG 2 cut(s) 307, 586
Mva1269I GAATGC 4 cut(s) 318, 406, 493, 792
MvaI CCWGG 2 cut(s) 307, 586
MwoI GCNNNNNNNGC 2 cut(s) 98, 830
NdeII GATC 5 cut(s) 130, 526, 619, 692, 721
NlaIII CATG 4 cut(s) 330, 691, 1079, 1140
NlaIV GGNNCC 3 cut(s) 100, 172, 559
PaqCI CACCTGC 1 cut(s) 83
PctI GAATGC 4 cut(s) 318, 406, 493, 792
PfeI GAWTC 6 cut(s) 5, 70, 887, 959, 1085, 1133
PkrI GCNGC 2 cut(s) 826, 979
PleI GAGTC 3 cut(s) 511, 775, 854
PpsI GAGTC 3 cut(s) 511, 775, 854
Psp6I CCWGG 2 cut(s) 305, 584
PspGI CCWGG 2 cut(s) 305, 584
PspN4I GGNNCC 3 cut(s) 100, 172, 559
PspPI GGNCC 1 cut(s) 1043
PstI CTGCAG 1 cut(s) 835
PstNI CAGNNNCTG 1 cut(s) 830
RsaI GTAC 4 cut(s) 62, 909, 955, 1099
RsaNI GTAC 4 cut(s) 61, 908, 954, 1098
SaqAI TTAA 2 cut(s) 581, 819
SatI GCNGC 2 cut(s) 825, 978
Sau3AI GATC 5 cut(s) 130, 526, 619, 692, 721
Sau96I GGNCC 1 cut(s) 1043
SchI GAGTC 3 cut(s) 512, 776, 854
ScrFI CCNGG 2 cut(s) 307, 586
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 1 cut(s) 982
SfcI CTRYAG 1 cut(s) 831
SinI GGWCC 1 cut(s) 1043
Sse9I AATT 9 cut(s) 146, 248, 285, 343, 400, 578, 646, 676, 696
SsiI CCGC 1 cut(s) 491
SspMI CTAG 3 cut(s) 510, 668, 945
StyD4I CCNGG 2 cut(s) 305, 584
StyI CCWWGG 2 cut(s) 9, 102
TaaI ACNGT 2 cut(s) 237, 1150
TaiI ACGT 1 cut(s) 615
TaqI TCGA 5 cut(s) 68, 150, 354, 644, 770
TasI AATT 9 cut(s) 146, 248, 285, 343, 400, 578, 646, 676, 696
TatI WGTACW 1 cut(s) 907
TfiI GAWTC 6 cut(s) 5, 70, 887, 959, 1085, 1133
Tru1I TTAA 2 cut(s) 581, 819
Tru9I TTAA 2 cut(s) 581, 819
TseI GCWGC 2 cut(s) 824, 977
TspDTI ATGAA 4 cut(s) 879, 951, 1029, 1125
VpaK11BI GGWCC 1 cut(s) 1043
XagI CCTNNNNNAGG 2 cut(s) 786, 948
XapI RAATTY 4 cut(s) 146, 400, 646, 676
XbaI TCTAGA 1 cut(s) 667
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 3 cut(s) 510, 668, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.