Rh7DG374100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011113
Physical Location & Seq
Forward (+)
50830235 .. 50842314
12080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG374100.1

Sequence Viewer

Length: 1329 bp
ATGGACCGCAAGCAACAGCTCACCGAGCTTAAGTTCCAGCAGGCCAACATCCTCGACACCTCGGCCGGCTCGCTCATTCGGCGATCAAGTCAAATCGGGCCGGGTTCGAGCAATCAGATTCTTTTCAATTCGGCAAGACTAGTTTTGTTTTTGGTAATGGATTCCAAGGCTTTAGCAAAATCCAAGAGGGCACACTCCCAACACCACACTAAAAAGTACCACTCGAATCAGAAAGCAAAGCTCCAAGCAGGTGGAGCCAAGGGGAAGCAAATCCCCACAAACTGGGATCGTTACGAGGAAGAATTCGATTTGGGTTCTGAAGGTGGTGCCTCCGACATTGTTTTGCCCAAGAGTAAAGGTGCAGATTATAGTCATCTCATTGCTGAGGCACAGTCACAGTCTCAGTCTCAGTCTCAGTCTCAATTTGACGATGTTCTGTCTGGGGAGTGGAATAAGGGGATTGGGTCTATGCTTTCGGCCAGGGGAGACAGCATTCTATCATGGATTGGAGATGATAATTTTGTTGTCGATGATAAGACAGCTCCAAATCACGAGGTATCATTTCTTTCCTTGAATTTGCATTCCCTTGCAGAACAACTGGACAAAGTAGACTTATCACAGAGGCTTTACATTGAGGCAGACCTATTGCCTCCAGAACTGAATGCGGAAGGTTTAGAGTCAACTAGCAGTCAGTCTGCTGATCAAGTGGAAGCTACATTAGTTGACAAAGGAGCCAGAGTAATATCCAAAGAATCAACCTGTGGTGCGTTTCCCGACAAGAGCGACGTAGCAGATCAAGATATTGAGATTATGATATCGAATTCTCCTGACATTGATTGTCTAGACCCAAATTTGTCTAACATGGGATCAATTTCAGTCAACCAAGTTGATGTTGATCTGAGTAAACTTGAAAAATCCACCAATCAAAGGAAACCACCAGAGTCGAGTGTGAAACCTTTGGCAGGCGTTCCAAACAAGAATGTTGCCACATTTAAGGCATCAACTGCAGAGGAAGAACTGGATATGCTTCTTGACTCATTTAGTGAGACCAACATAAATGATTCATCTGGTTTCAGGTTTGTACAGGAAGAAGCTTCTGTGCCTCCACTTCAACTTCCTAGAAAAGGTACAGATTCATCAAAGCTGATGGCTGCCAACCTTGATGATGCGCTTGATGACTTGATAAATGAAATATCCATTCCAATCAACCAAAGTGGTCCATCTCACCCCCAAGAAAAAATGGCCGTGCATGATTTTGATTCTTCCTCTCGTACTATGTCAAAGTCCAAAGAACTGGATGATTTTGATTCATGGTTGGATACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

442

Amino Acids

48.26

Weight (kDa)

4.7

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44150
fragaria_vesca FvH4_5g30510 FvH4_5g30510
malus_domestica MD15G1126800.v1.1
prunus_persica Prupe.2G094200_v2.0.a1
pyrus_communis pycom15g11440
rosa_chinensis RchiOBHm_Chr7g0225261 RchiOBHm_Chr7g0225321
rosa_laevigata RLG00000001831
rosa_multiflora Rmu_sc0000259.1_g000043
rosa_roxburghii Rroxscaffold_3G00233960
rosa_rugosa Rorug07G0228200 Rorug07G0228300
rosa_samantha Rh7AG374700 Rh7AG375000 Rh7BG363300 Rh7CG393200 Rh7CG393700 Rh7DG374100
rosa_wichuraiana Rw7G031570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 282
AccI GTMKAC 1 cut(s) 609
AciI CCGC 2 cut(s) 7, 665
AclWI GGATC 2 cut(s) 294, 874
AcoI YGGCCR 3 cut(s) 63, 477, 1242
AcsI RAATTY 4 cut(s) 302, 574, 820, 850
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 4 cut(s) 218, 1083, 1129, 1273
AfiI CCNNNNNNNGG 4 cut(s) 282, 927, 962, 1124
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 4 cut(s) 127, 574, 911, 1112
AhlI ACTAGT 1 cut(s) 139
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 7 cut(s) 19, 28, 241, 542, 713, 1094, 1144
AluI AGCT 7 cut(s) 19, 28, 241, 542, 713, 1094, 1144
Alw26I GTCTC 6 cut(s) 405, 411, 417, 423, 480, 1040
AlwI GGATC 2 cut(s) 294, 874
AoxI GGCC 5 cut(s) 42, 63, 98, 477, 1242
ApeKI GCWGC 1 cut(s) 1151
ApoI RAATTY 4 cut(s) 302, 574, 820, 850
AspLEI GCGC 1 cut(s) 1171
AspS9I GGNCC 3 cut(s) 4, 98, 1217
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 13, 1217
AvaII GGWCC 2 cut(s) 4, 1217
BaeGI GKGCMC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 326
BauI CACGAG 1 cut(s) 551
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 1138
BccI CCATC 2 cut(s) 1141, 1228
BceAI ACGGC 1 cut(s) 1229
BciT130I CCWGG 1 cut(s) 481
BciVI GTATCC 1 cut(s) 1312
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 6 cut(s) 405, 411, 417, 423, 480, 1040
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 4 cut(s) 140, 684, 842, 1119
BfmI CTRYAG 1 cut(s) 1005
BfrI CTTAAG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 239
BfuI GTATCC 1 cut(s) 1312
BisI GCNGC 1 cut(s) 1152
BlsI GCNGC 1 cut(s) 1153
Bme1390I CCNGG 2 cut(s) 102, 481
Bme18I GGWCC 2 cut(s) 4, 1217
BmgT120I GGNCC 3 cut(s) 4, 98, 1217
BmiI GGNNCC 3 cut(s) 256, 328, 733
BmrFI CCNGG 2 cut(s) 102, 481
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 1007, 1156
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 636
Bpu10I CCTNAGC 1 cut(s) 384
BpuMI CCSGG 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 894
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 4 cut(s) 60, 165, 258, 480
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bsc4I CCNNNNNNNGG 4 cut(s) 282, 927, 962, 1124
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 4 cut(s) 287, 603, 1023, 1299
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 1 cut(s) 481
BseDI CCNNGG 4 cut(s) 60, 165, 258, 480
BseGI GGATG 2 cut(s) 48, 1303
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 4 cut(s) 282, 927, 962, 1124
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 5 cut(s) 375, 416, 422, 428, 890
BseNI ACTGG 4 cut(s) 287, 603, 1023, 1299
BseSI GKGCMC 1 cut(s) 193
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 1138
BsgI GTGCAG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 5 cut(s) 44, 65, 100, 479, 1244
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 66
BsiSI CCGG 2 cut(s) 66, 101
BslI CCNNNNNNNGG 4 cut(s) 282, 927, 962, 1124
BsmAI GTCTC 6 cut(s) 405, 411, 417, 423, 480, 1040
BsmI GAATGC 3 cut(s) 492, 580, 667
BsnI GGCC 5 cut(s) 44, 65, 100, 479, 1244
Bso31I GGTCTC 1 cut(s) 1040
Bsp1286I GDGCHC 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 1081
Bsp143I GATC 6 cut(s) 83, 286, 700, 793, 866, 895
BspACI CCGC 2 cut(s) 7, 665
BspANI GGCC 5 cut(s) 44, 65, 100, 479, 1244
BspCNI CTCAG 5 cut(s) 376, 415, 421, 427, 891
BspLI GGNNCC 3 cut(s) 256, 328, 733
BspMAI CTGCAG 1 cut(s) 1009
BspMI ACCTGC 1 cut(s) 239
BspPI GGATC 2 cut(s) 294, 874
BspT107I GGYRCC 1 cut(s) 326
BspTI CTTAAG 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 1040
BsrDI GCAATG 1 cut(s) 378
BsrFI RCCGGY 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 1081
BsrI ACTGG 4 cut(s) 287, 603, 1023, 1299
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 60, 165, 258, 480
BssMI GATC 6 cut(s) 83, 286, 700, 793, 866, 895
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 2 cut(s) 165, 258
Bst2BI CACGAG 1 cut(s) 551
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 3 cut(s) 393, 399, 1324
BstAFI CTTAAG 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstAUI TGTACA 1 cut(s) 1081
BstC8I GCNNGC 5 cut(s) 11, 42, 67, 71, 964
BstDEI CTNAG 5 cut(s) 384, 402, 408, 414, 899
BstENI CCTNNNNNAGG 2 cut(s) 960, 1122
BstF5I GGATG 2 cut(s) 48, 1303
BstHHI GCGC 1 cut(s) 1171
BstKTI GATC 6 cut(s) 86, 289, 703, 796, 869, 898
BstMAI GTCTC 6 cut(s) 405, 411, 417, 423, 480, 1040
BstMBI GATC 6 cut(s) 83, 286, 700, 793, 866, 895
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 4 cut(s) 25, 79, 254, 1004
BstNI CCWGG 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 100, 479
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 1138
BstXI CCANNNNNNTGG 2 cut(s) 251, 1294
BstZI CGGCCG 1 cut(s) 63
BsuI GTATCC 1 cut(s) 1312
BsuRI GGCC 5 cut(s) 44, 65, 100, 479, 1244
BtsCI GGATG 2 cut(s) 48, 1303
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 5 cut(s) 11, 42, 67, 71, 964
CfoI GCGC 1 cut(s) 1171
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 4, 98, 1217
Csp6I GTAC 4 cut(s) 217, 1082, 1128, 1272
CspCI CAANNNNNGTGG 2 cut(s) 1195, 1230
CviAII CATG 4 cut(s) 501, 862, 1250, 1311
CviQI GTAC 4 cut(s) 217, 1082, 1128, 1272
DdeI CTNAG 5 cut(s) 384, 402, 408, 414, 899
DpnI GATC 6 cut(s) 85, 288, 702, 795, 868, 897
DpnII GATC 6 cut(s) 83, 286, 700, 793, 866, 895
EaeI YGGCCR 3 cut(s) 63, 477, 1242
EagI CGGCCG 1 cut(s) 63
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 165, 258
Eco31I GGTCTC 1 cut(s) 1040
Eco32I GATATC 1 cut(s) 816
Eco47I GGWCC 2 cut(s) 4, 1217
Eco52I CGGCCG 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 339
EcoNI CCTNNNNNAGG 2 cut(s) 960, 1122
EcoRI GAATTC 2 cut(s) 302, 820
EcoRII CCWGG 1 cut(s) 479
EcoRV GATATC 1 cut(s) 816
EcoT14I CCWWGG 2 cut(s) 165, 258
ErhI CCWWGG 2 cut(s) 165, 258
FaeI CATG 4 cut(s) 504, 865, 1253, 1314
FatI CATG 4 cut(s) 500, 861, 1249, 1310
FbaI TGATCA 1 cut(s) 700
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 1 cut(s) 1152
FokI GGATG 2 cut(s) 35, 1310
Fsp4HI GCNGC 1 cut(s) 1152
FspBI CTAG 4 cut(s) 140, 684, 842, 1119
GlaI GCGC 1 cut(s) 1170
GluI GCNGC 1 cut(s) 1152
GsuI CTGGAG 1 cut(s) 636
HaeIII GGCC 5 cut(s) 44, 65, 100, 479, 1244
HapII CCGG 2 cut(s) 66, 101
HhaI GCGC 1 cut(s) 1171
Hin1II CATG 4 cut(s) 504, 865, 1253, 1314
Hin6I GCGC 1 cut(s) 1169
HinP1I GCGC 1 cut(s) 1169
HincII GTYRAC 3 cut(s) 681, 724, 880
HindII GTYRAC 3 cut(s) 681, 724, 880
HindIII AAGCTT 1 cut(s) 1092
HpaII CCGG 2 cut(s) 66, 101
HphI GGTGA 2 cut(s) 13, 1217
Hpy166II GTNNAC 5 cut(s) 610, 681, 724, 880, 905
Hpy188I TCNGA 5 cut(s) 117, 231, 319, 334, 900
Hpy188III TCNNGA 7 cut(s) 551, 653, 773, 797, 827, 842, 1031
Hpy8I GTNNAC 5 cut(s) 610, 681, 724, 880, 905
Hpy99I CGWCG 1 cut(s) 788
HpyAV CCTTC 2 cut(s) 314, 662
HpyCH4III ACNGT 3 cut(s) 393, 399, 1324
HpyCH4IV ACGT 1 cut(s) 786
HpyCH4V TGCA 5 cut(s) 362, 580, 590, 1007, 1249
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 79, 254, 1004
HpyF3I CTNAG 5 cut(s) 384, 402, 408, 414, 899
HpySE526I ACGT 1 cut(s) 786
Hsp92II CATG 4 cut(s) 504, 865, 1253, 1314
HspAI GCGC 1 cut(s) 1169
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 6 cut(s) 83, 286, 700, 793, 866, 895
LmnI GCTCC 4 cut(s) 246, 254, 547, 731
Lsp1109I GCAGC 1 cut(s) 1138
LweI GCATC 2 cut(s) 1007, 1156
MaeI CTAG 4 cut(s) 140, 684, 842, 1119
MaeII ACGT 1 cut(s) 786
MaeIII GTNAC 2 cut(s) 290, 393
MalI GATC 6 cut(s) 85, 288, 702, 795, 868, 897
MboI GATC 6 cut(s) 83, 286, 700, 793, 866, 895
MboII GAAGA 4 cut(s) 311, 1025, 1100, 1254
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 8 cut(s) 127, 302, 422, 517, 574, 820, 850, 870
MlyI GAGTC 3 cut(s) 686, 950, 1028
MmeI TCCRAC 2 cut(s) 357, 1296
MroNI GCCGGC 1 cut(s) 65
MseI TTAA 2 cut(s) 30, 993
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 2 cut(s) 66, 101
MspR9I CCNGG 2 cut(s) 102, 481
Mva1269I GAATGC 3 cut(s) 492, 580, 667
MvaI CCWGG 1 cut(s) 481
MwoI GCNNNNNNNGC 4 cut(s) 25, 79, 254, 1004
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 102
NdeII GATC 6 cut(s) 83, 286, 700, 793, 866, 895
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 4 cut(s) 504, 865, 1253, 1314
NlaIV GGNNCC 3 cut(s) 256, 328, 733
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 393
PaqCI CACCTGC 1 cut(s) 239
PctI GAATGC 3 cut(s) 492, 580, 667
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 8 cut(s) 118, 161, 226, 752, 1061, 1133, 1259, 1307
PflMI CCANNNNNTGG 1 cut(s) 282
PkrI GCNGC 1 cut(s) 1153
PleI GAGTC 3 cut(s) 685, 949, 1028
PpsI GAGTC 3 cut(s) 685, 949, 1028
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 3 cut(s) 256, 328, 733
PspPI GGNCC 3 cut(s) 4, 98, 1217
PstI CTGCAG 1 cut(s) 1009
RsaI GTAC 4 cut(s) 218, 1083, 1129, 1273
RsaNI GTAC 4 cut(s) 217, 1082, 1128, 1272
SaqAI TTAA 2 cut(s) 30, 993
SatI GCNGC 1 cut(s) 1152
Sau3AI GATC 6 cut(s) 83, 286, 700, 793, 866, 895
Sau96I GGNCC 3 cut(s) 4, 98, 1217
SchI GAGTC 3 cut(s) 686, 950, 1028
ScrFI CCNGG 2 cut(s) 102, 481
SduI GDGCHC 1 cut(s) 193
SfaNI GCATC 2 cut(s) 1007, 1156
SfcI CTRYAG 1 cut(s) 1005
SinI GGWCC 2 cut(s) 4, 1217
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SpeI ACTAGT 1 cut(s) 139
Sse9I AATT 8 cut(s) 127, 302, 422, 517, 574, 820, 850, 870
SsiI CCGC 2 cut(s) 7, 665
SspMI CTAG 4 cut(s) 140, 684, 842, 1119
StyD4I CCNGG 2 cut(s) 100, 479
StyI CCWWGG 2 cut(s) 165, 258
TaaI ACNGT 3 cut(s) 393, 399, 1324
TaiI ACGT 1 cut(s) 789
TaqI TCGA 7 cut(s) 54, 107, 224, 306, 528, 818, 944
TasI AATT 8 cut(s) 127, 302, 422, 517, 574, 820, 850, 870
TatI WGTACW 1 cut(s) 1081
TfiI GAWTC 8 cut(s) 118, 161, 226, 752, 1061, 1133, 1259, 1307
Tru1I TTAA 2 cut(s) 30, 993
Tru9I TTAA 2 cut(s) 30, 993
TseFI GTSAC 1 cut(s) 393
TseI GCWGC 1 cut(s) 1151
Tsp45I GTSAC 1 cut(s) 393
TspDTI ATGAA 4 cut(s) 1053, 1125, 1203, 1299
Van91I CCANNNNNTGG 1 cut(s) 282
Vha464I CTTAAG 1 cut(s) 29
VpaK11BI GGWCC 2 cut(s) 4, 1217
XagI CCTNNNNNAGG 2 cut(s) 960, 1122
XapI RAATTY 4 cut(s) 302, 574, 820, 850
XbaI TCTAGA 1 cut(s) 841
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 4 cut(s) 140, 684, 842, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.